gene detail

Gene description

TAIR ID: AT3G55580

Short description: Regulator of chromosome condensation (RCC1) family protein

Pathogen responsiveness: -0.84

General responsiveness: -1.53

Orthologous

Rice:

OS05G0456925

Maize:

GRMZM2G337819

Wheat: No orthologous gene

GO biological process

regulation of lignin biosynthetic process, protein binding, cellular response to freezing, cold acclimation

GO cellular component

nucleus, cytoplasm

GO molecular function

unkown

Protein domain

Pfam	PF13540, Regulator of chromosome condensation (RCC1) repeat
Pfam	PF00415, Regulator of chromosome condensation (RCC1) repeat

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT4G36990

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

8 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	-3.42	1.39E-08
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	-3.30	1.62E-08
GSE37269	Ler0, WT, control	Ler0, WT, TEV 21 d	1.84	4.03E-03
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.90	1.52E-03
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-1.75	1.44E-03
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-1.63	2.77E-03
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	-3.10	6.75E-08
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	-3.17	4.34E-08