co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G55580

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042407: cristae formation	0.00E+00
2	GO:0045184: establishment of protein localization	0.00E+00
3	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
4	GO:0031222: arabinan catabolic process	0.00E+00
5	GO:0042352: GDP-L-fucose salvage	0.00E+00
6	GO:0061157: mRNA destabilization	0.00E+00
7	GO:0002184: cytoplasmic translational termination	0.00E+00
8	GO:0043392: negative regulation of DNA binding	0.00E+00
9	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
10	GO:0010422: regulation of brassinosteroid biosynthetic process	0.00E+00
11	GO:0017038: protein import	0.00E+00
12	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
13	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
14	GO:0018026: peptidyl-lysine monomethylation	1.29E-05
15	GO:0009733: response to auxin	6.63E-05
16	GO:0009734: auxin-activated signaling pathway	1.08E-04
17	GO:0005983: starch catabolic process	1.66E-04
18	GO:0010027: thylakoid membrane organization	2.76E-04
19	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	3.05E-04
20	GO:0042793: transcription from plastid promoter	3.41E-04
21	GO:2000033: regulation of seed dormancy process	4.54E-04
22	GO:0090558: plant epidermis development	5.43E-04
23	GO:0046520: sphingoid biosynthetic process	5.43E-04
24	GO:0010480: microsporocyte differentiation	5.43E-04
25	GO:0042371: vitamin K biosynthetic process	5.43E-04
26	GO:0043686: co-translational protein modification	5.43E-04
27	GO:0035987: endodermal cell differentiation	5.43E-04
28	GO:0043007: maintenance of rDNA	5.43E-04
29	GO:1902458: positive regulation of stomatal opening	5.43E-04
30	GO:0015904: tetracycline transport	5.43E-04
31	GO:0005991: trehalose metabolic process	5.43E-04
32	GO:0000305: response to oxygen radical	5.43E-04
33	GO:0000023: maltose metabolic process	5.43E-04
34	GO:0042659: regulation of cell fate specification	5.43E-04
35	GO:0000025: maltose catabolic process	5.43E-04
36	GO:0005980: glycogen catabolic process	5.43E-04
37	GO:0030198: extracellular matrix organization	5.43E-04
38	GO:0048437: floral organ development	5.81E-04
39	GO:0046620: regulation of organ growth	7.24E-04
40	GO:0009658: chloroplast organization	7.33E-04
41	GO:0009416: response to light stimulus	7.67E-04
42	GO:0009640: photomorphogenesis	9.08E-04
43	GO:0010182: sugar mediated signaling pathway	9.10E-04
44	GO:0009790: embryo development	9.93E-04
45	GO:0007154: cell communication	1.17E-03
46	GO:0006423: cysteinyl-tRNA aminoacylation	1.17E-03
47	GO:0090342: regulation of cell aging	1.17E-03
48	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.17E-03
49	GO:0006568: tryptophan metabolic process	1.17E-03
50	GO:0009629: response to gravity	1.17E-03
51	GO:0019388: galactose catabolic process	1.17E-03
52	GO:0040008: regulation of growth	1.23E-03
53	GO:0010583: response to cyclopentenone	1.29E-03
54	GO:0006857: oligopeptide transport	1.59E-03
55	GO:0009773: photosynthetic electron transport in photosystem I	1.67E-03
56	GO:0030261: chromosome condensation	1.92E-03
57	GO:0033591: response to L-ascorbic acid	1.92E-03
58	GO:0090708: specification of plant organ axis polarity	1.92E-03
59	GO:0010102: lateral root morphogenesis	2.18E-03
60	GO:0006006: glucose metabolic process	2.18E-03
61	GO:0010588: cotyledon vascular tissue pattern formation	2.18E-03
62	GO:2000012: regulation of auxin polar transport	2.18E-03
63	GO:0016042: lipid catabolic process	2.30E-03
64	GO:0010020: chloroplast fission	2.46E-03
65	GO:0009590: detection of gravity	2.78E-03
66	GO:0043572: plastid fission	2.78E-03
67	GO:0010321: regulation of vegetative phase change	2.78E-03
68	GO:0010371: regulation of gibberellin biosynthetic process	2.78E-03
69	GO:0009102: biotin biosynthetic process	2.78E-03
70	GO:0010601: positive regulation of auxin biosynthetic process	2.78E-03
71	GO:0009647: skotomorphogenesis	2.78E-03
72	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.78E-03
73	GO:0046739: transport of virus in multicellular host	2.78E-03
74	GO:0006749: glutathione metabolic process	3.75E-03
75	GO:0042938: dipeptide transport	3.75E-03
76	GO:0010109: regulation of photosynthesis	3.75E-03
77	GO:0042274: ribosomal small subunit biogenesis	3.75E-03
78	GO:0030104: water homeostasis	3.75E-03
79	GO:0006221: pyrimidine nucleotide biosynthetic process	3.75E-03
80	GO:0010236: plastoquinone biosynthetic process	4.81E-03
81	GO:0045038: protein import into chloroplast thylakoid membrane	4.81E-03
82	GO:0048497: maintenance of floral organ identity	4.81E-03
83	GO:0031365: N-terminal protein amino acid modification	4.81E-03
84	GO:0016131: brassinosteroid metabolic process	4.81E-03
85	GO:0009793: embryo development ending in seed dormancy	5.25E-03
86	GO:0018258: protein O-linked glycosylation via hydroxyproline	5.96E-03
87	GO:0000741: karyogamy	5.96E-03
88	GO:0010405: arabinogalactan protein metabolic process	5.96E-03
89	GO:0009959: negative gravitropism	5.96E-03
90	GO:0009913: epidermal cell differentiation	5.96E-03
91	GO:0060918: auxin transport	5.96E-03
92	GO:1902456: regulation of stomatal opening	5.96E-03
93	GO:0006855: drug transmembrane transport	6.10E-03
94	GO:0006662: glycerol ether metabolic process	6.85E-03
95	GO:0010197: polar nucleus fusion	6.85E-03
96	GO:0009741: response to brassinosteroid	6.85E-03
97	GO:0042026: protein refolding	7.20E-03
98	GO:0048280: vesicle fusion with Golgi apparatus	7.20E-03
99	GO:0048509: regulation of meristem development	7.20E-03
100	GO:0030488: tRNA methylation	7.20E-03
101	GO:0010310: regulation of hydrogen peroxide metabolic process	7.20E-03
102	GO:2000067: regulation of root morphogenesis	7.20E-03
103	GO:0042372: phylloquinone biosynthetic process	7.20E-03
104	GO:0006458: 'de novo' protein folding	7.20E-03
105	GO:0009646: response to absence of light	7.37E-03
106	GO:0019252: starch biosynthetic process	7.91E-03
107	GO:0010444: guard mother cell differentiation	8.52E-03
108	GO:0030307: positive regulation of cell growth	8.52E-03
109	GO:0010161: red light signaling pathway	8.52E-03
110	GO:0009772: photosynthetic electron transport in photosystem II	8.52E-03
111	GO:0010098: suspensor development	8.52E-03
112	GO:1901657: glycosyl compound metabolic process	9.67E-03
113	GO:0006605: protein targeting	9.92E-03
114	GO:0009704: de-etiolation	9.92E-03
115	GO:0070413: trehalose metabolism in response to stress	9.92E-03
116	GO:2000070: regulation of response to water deprivation	9.92E-03
117	GO:0055075: potassium ion homeostasis	9.92E-03
118	GO:0000105: histidine biosynthetic process	9.92E-03
119	GO:0005978: glycogen biosynthetic process	9.92E-03
120	GO:0005975: carbohydrate metabolic process	1.10E-02
121	GO:0010100: negative regulation of photomorphogenesis	1.14E-02
122	GO:0010497: plasmodesmata-mediated intercellular transport	1.14E-02
123	GO:0009657: plastid organization	1.14E-02
124	GO:0006526: arginine biosynthetic process	1.14E-02
125	GO:0032544: plastid translation	1.14E-02
126	GO:0010099: regulation of photomorphogenesis	1.14E-02
127	GO:0015996: chlorophyll catabolic process	1.14E-02
128	GO:0007186: G-protein coupled receptor signaling pathway	1.14E-02
129	GO:0006783: heme biosynthetic process	1.30E-02
130	GO:0010206: photosystem II repair	1.30E-02
131	GO:0030154: cell differentiation	1.35E-02
132	GO:0009723: response to ethylene	1.38E-02
133	GO:0015995: chlorophyll biosynthetic process	1.45E-02
134	GO:0031425: chloroplast RNA processing	1.46E-02
135	GO:0009638: phototropism	1.46E-02
136	GO:0043067: regulation of programmed cell death	1.46E-02
137	GO:2000280: regulation of root development	1.46E-02
138	GO:0009098: leucine biosynthetic process	1.46E-02
139	GO:1900865: chloroplast RNA modification	1.46E-02
140	GO:0048829: root cap development	1.63E-02
141	GO:0009641: shade avoidance	1.63E-02
142	GO:0016441: posttranscriptional gene silencing	1.63E-02
143	GO:0010629: negative regulation of gene expression	1.63E-02
144	GO:0010162: seed dormancy process	1.63E-02
145	GO:0006896: Golgi to vacuole transport	1.63E-02
146	GO:0009813: flavonoid biosynthetic process	1.69E-02
147	GO:0048229: gametophyte development	1.81E-02
148	GO:0010015: root morphogenesis	1.81E-02
149	GO:0000038: very long-chain fatty acid metabolic process	1.81E-02
150	GO:0009073: aromatic amino acid family biosynthetic process	1.81E-02
151	GO:0009682: induced systemic resistance	1.81E-02
152	GO:0045037: protein import into chloroplast stroma	1.99E-02
153	GO:0012501: programmed cell death	1.99E-02
154	GO:0015706: nitrate transport	1.99E-02
155	GO:0006633: fatty acid biosynthetic process	2.05E-02
156	GO:0045892: negative regulation of transcription, DNA-templated	2.05E-02
157	GO:0034599: cellular response to oxidative stress	2.14E-02
158	GO:0010628: positive regulation of gene expression	2.18E-02
159	GO:0050826: response to freezing	2.18E-02
160	GO:0010075: regulation of meristem growth	2.18E-02
161	GO:0009767: photosynthetic electron transport chain	2.18E-02
162	GO:0030048: actin filament-based movement	2.18E-02
163	GO:0009266: response to temperature stimulus	2.37E-02
164	GO:0009934: regulation of meristem structural organization	2.37E-02
165	GO:0010207: photosystem II assembly	2.37E-02
166	GO:0009451: RNA modification	2.38E-02
167	GO:0006631: fatty acid metabolic process	2.44E-02
168	GO:0006508: proteolysis	2.47E-02
169	GO:0090351: seedling development	2.58E-02
170	GO:0010030: positive regulation of seed germination	2.58E-02
171	GO:0080188: RNA-directed DNA methylation	2.58E-02
172	GO:0006071: glycerol metabolic process	2.78E-02
173	GO:0006833: water transport	2.78E-02
174	GO:0019762: glucosinolate catabolic process	2.78E-02
175	GO:0000162: tryptophan biosynthetic process	2.78E-02
176	GO:0010187: negative regulation of seed germination	3.00E-02
177	GO:0005992: trehalose biosynthetic process	3.00E-02
178	GO:0051302: regulation of cell division	3.22E-02
179	GO:0019953: sexual reproduction	3.22E-02
180	GO:0003333: amino acid transmembrane transport	3.44E-02
181	GO:0048511: rhythmic process	3.44E-02
182	GO:0010431: seed maturation	3.44E-02
183	GO:0061077: chaperone-mediated protein folding	3.44E-02
184	GO:0048278: vesicle docking	3.44E-02
185	GO:0006730: one-carbon metabolic process	3.67E-02
186	GO:0031348: negative regulation of defense response	3.67E-02
187	GO:0030245: cellulose catabolic process	3.67E-02
188	GO:0009686: gibberellin biosynthetic process	3.90E-02
189	GO:0009909: regulation of flower development	3.94E-02
190	GO:0048367: shoot system development	4.34E-02
191	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	4.39E-02
192	GO:0042147: retrograde transport, endosome to Golgi	4.39E-02
193	GO:0006351: transcription, DNA-templated	4.48E-02
194	GO:0007275: multicellular organism development	4.50E-02
195	GO:0080022: primary root development	4.63E-02
196	GO:0042335: cuticle development	4.63E-02
197	GO:0010051: xylem and phloem pattern formation	4.63E-02
198	GO:0010087: phloem or xylem histogenesis	4.63E-02
199	GO:0010118: stomatal movement	4.63E-02
200	GO:0048653: anther development	4.63E-02
201	GO:0042631: cellular response to water deprivation	4.63E-02
202	GO:0009740: gibberellic acid mediated signaling pathway	4.75E-02
203	GO:0010305: leaf vascular tissue pattern formation	4.89E-02
204	GO:0009960: endosperm development	4.89E-02
205	GO:0006520: cellular amino acid metabolic process	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0051060: pullulanase activity	0.00E+00
3	GO:0047661: amino-acid racemase activity	0.00E+00
4	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
5	GO:0097100: supercoiled DNA binding	0.00E+00
6	GO:0005201: extracellular matrix structural constituent	0.00E+00
7	GO:0047341: fucose-1-phosphate guanylyltransferase activity	0.00E+00
8	GO:0004076: biotin synthase activity	0.00E+00
9	GO:0071633: dihydroceramidase activity	0.00E+00
10	GO:0005363: maltose transmembrane transporter activity	0.00E+00
11	GO:0010303: limit dextrinase activity	0.00E+00
12	GO:0050201: fucokinase activity	0.00E+00
13	GO:0016279: protein-lysine N-methyltransferase activity	1.59E-04
14	GO:0004176: ATP-dependent peptidase activity	4.83E-04
15	GO:0042586: peptide deformylase activity	5.43E-04
16	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	5.43E-04
17	GO:0010313: phytochrome binding	5.43E-04
18	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	5.43E-04
19	GO:0000170: sphingosine hydroxylase activity	5.43E-04
20	GO:0050139: nicotinate-N-glucosyltransferase activity	5.43E-04
21	GO:0004425: indole-3-glycerol-phosphate synthase activity	5.43E-04
22	GO:0008184: glycogen phosphorylase activity	5.43E-04
23	GO:0004134: 4-alpha-glucanotransferase activity	5.43E-04
24	GO:0004645: phosphorylase activity	5.43E-04
25	GO:0009374: biotin binding	5.43E-04
26	GO:0001085: RNA polymerase II transcription factor binding	9.10E-04
27	GO:0008493: tetracycline transporter activity	1.17E-03
28	GO:0004362: glutathione-disulfide reductase activity	1.17E-03
29	GO:0003852: 2-isopropylmalate synthase activity	1.17E-03
30	GO:0004817: cysteine-tRNA ligase activity	1.17E-03
31	GO:0016630: protochlorophyllide reductase activity	1.17E-03
32	GO:0042284: sphingolipid delta-4 desaturase activity	1.17E-03
33	GO:0004614: phosphoglucomutase activity	1.17E-03
34	GO:0008237: metallopeptidase activity	1.63E-03
35	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.92E-03
36	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.92E-03
37	GO:0005215: transporter activity	1.92E-03
38	GO:0005504: fatty acid binding	1.92E-03
39	GO:0003913: DNA photolyase activity	1.92E-03
40	GO:0009041: uridylate kinase activity	2.78E-03
41	GO:0043023: ribosomal large subunit binding	2.78E-03
42	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	2.78E-03
43	GO:0015238: drug transmembrane transporter activity	2.84E-03
44	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.21E-03
45	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.21E-03
46	GO:0046556: alpha-L-arabinofuranosidase activity	3.75E-03
47	GO:0004335: galactokinase activity	3.75E-03
48	GO:0004659: prenyltransferase activity	3.75E-03
49	GO:0042936: dipeptide transporter activity	3.75E-03
50	GO:0045430: chalcone isomerase activity	3.75E-03
51	GO:0003989: acetyl-CoA carboxylase activity	4.81E-03
52	GO:0003727: single-stranded RNA binding	5.41E-03
53	GO:0047134: protein-disulfide reductase activity	5.87E-03
54	GO:0035673: oligopeptide transmembrane transporter activity	5.96E-03
55	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	5.96E-03
56	GO:0080030: methyl indole-3-acetate esterase activity	5.96E-03
57	GO:1990714: hydroxyproline O-galactosyltransferase activity	5.96E-03
58	GO:0004629: phospholipase C activity	5.96E-03
59	GO:0004556: alpha-amylase activity	5.96E-03
60	GO:0004435: phosphatidylinositol phospholipase C activity	7.20E-03
61	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	7.20E-03
62	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	7.20E-03
63	GO:0016832: aldehyde-lyase activity	7.20E-03
64	GO:0004791: thioredoxin-disulfide reductase activity	7.37E-03
65	GO:0016298: lipase activity	7.67E-03
66	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	9.67E-03
67	GO:0005200: structural constituent of cytoskeleton	1.09E-02
68	GO:0016788: hydrolase activity, acting on ester bonds	1.14E-02
69	GO:0008173: RNA methyltransferase activity	1.14E-02
70	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.30E-02
71	GO:0102483: scopolin beta-glucosidase activity	1.45E-02
72	GO:0030234: enzyme regulator activity	1.63E-02
73	GO:0015020: glucuronosyltransferase activity	1.63E-02
74	GO:0052689: carboxylic ester hydrolase activity	1.78E-02
75	GO:0004222: metalloendopeptidase activity	1.78E-02
76	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.81E-02
77	GO:0044183: protein binding involved in protein folding	1.81E-02
78	GO:0047372: acylglycerol lipase activity	1.81E-02
79	GO:0004674: protein serine/threonine kinase activity	1.84E-02
80	GO:0015198: oligopeptide transporter activity	1.99E-02
81	GO:0004871: signal transducer activity	2.15E-02
82	GO:0004089: carbonate dehydratase activity	2.18E-02
83	GO:0015297: antiporter activity	2.18E-02
84	GO:0000149: SNARE binding	2.24E-02
85	GO:0008422: beta-glucosidase activity	2.24E-02
86	GO:0003774: motor activity	2.37E-02
87	GO:0008146: sulfotransferase activity	2.58E-02
88	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.58E-02
89	GO:0004190: aspartic-type endopeptidase activity	2.58E-02
90	GO:0003712: transcription cofactor activity	2.58E-02
91	GO:0005484: SNAP receptor activity	2.64E-02
92	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.78E-02
93	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.78E-02
94	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.78E-02
95	GO:0005528: FK506 binding	3.00E-02
96	GO:0004519: endonuclease activity	3.09E-02
97	GO:0005345: purine nucleobase transmembrane transporter activity	3.22E-02
98	GO:0033612: receptor serine/threonine kinase binding	3.44E-02
99	GO:0008408: 3'-5' exonuclease activity	3.44E-02
100	GO:0004707: MAP kinase activity	3.44E-02
101	GO:0008168: methyltransferase activity	3.80E-02
102	GO:0000287: magnesium ion binding	3.89E-02
103	GO:0008810: cellulase activity	3.90E-02
104	GO:0008514: organic anion transmembrane transporter activity	4.14E-02
105	GO:0003682: chromatin binding	4.26E-02
106	GO:0004650: polygalacturonase activity	4.61E-02
107	GO:0050660: flavin adenine dinucleotide binding	4.75E-02
108	GO:0004527: exonuclease activity	4.89E-02
109	GO:0046983: protein dimerization activity	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	7.34E-06
2	GO:0009507: chloroplast	3.50E-05
3	GO:0009508: plastid chromosome	2.00E-04
4	GO:0009295: nucleoid	2.27E-04
5	GO:0000796: condensin complex	5.43E-04
6	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.17E-03
7	GO:0009534: chloroplast thylakoid	1.20E-03
8	GO:0009317: acetyl-CoA carboxylase complex	1.92E-03
9	GO:0009528: plastid inner membrane	1.92E-03
10	GO:0019897: extrinsic component of plasma membrane	1.92E-03
11	GO:0005667: transcription factor complex	2.19E-03
12	GO:0009544: chloroplast ATP synthase complex	3.75E-03
13	GO:0009527: plastid outer membrane	3.75E-03
14	GO:0005886: plasma membrane	4.17E-03
15	GO:0005655: nucleolar ribonuclease P complex	7.20E-03
16	GO:0009941: chloroplast envelope	7.61E-03
17	GO:0048226: Casparian strip	9.92E-03
18	GO:0012507: ER to Golgi transport vesicle membrane	9.92E-03
19	GO:0009501: amyloplast	9.92E-03
20	GO:0010319: stromule	1.09E-02
21	GO:0009706: chloroplast inner membrane	1.15E-02
22	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.30E-02
23	GO:0031969: chloroplast membrane	1.53E-02
24	GO:0000418: DNA-directed RNA polymerase IV complex	1.63E-02
25	GO:0016459: myosin complex	1.63E-02
26	GO:0005884: actin filament	1.81E-02
27	GO:0090404: pollen tube tip	1.81E-02
28	GO:0005578: proteinaceous extracellular matrix	2.18E-02
29	GO:0031201: SNARE complex	2.44E-02
30	GO:0031902: late endosome membrane	2.44E-02
31	GO:0043231: intracellular membrane-bounded organelle	3.16E-02
32	GO:0009654: photosystem II oxygen evolving complex	3.22E-02
33	GO:0009532: plastid stroma	3.44E-02
34	GO:0015629: actin cytoskeleton	3.90E-02
35	GO:0005770: late endosome	4.89E-02