Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G55580

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0097164: ammonium ion metabolic process0.00E+00
2GO:0070455: positive regulation of heme biosynthetic process0.00E+00
3GO:0045184: establishment of protein localization0.00E+00
4GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
5GO:0006399: tRNA metabolic process0.00E+00
6GO:0015843: methylammonium transport0.00E+00
7GO:0031222: arabinan catabolic process0.00E+00
8GO:0070979: protein K11-linked ubiquitination0.00E+00
9GO:0046719: regulation by virus of viral protein levels in host cell0.00E+00
10GO:0009606: tropism0.00E+00
11GO:1903224: regulation of endodermal cell differentiation0.00E+00
12GO:0007638: mechanosensory behavior0.00E+00
13GO:0035884: arabinan biosynthetic process0.00E+00
14GO:0009734: auxin-activated signaling pathway5.22E-12
15GO:0046620: regulation of organ growth5.34E-11
16GO:0009733: response to auxin2.70E-10
17GO:0040008: regulation of growth3.96E-08
18GO:0009926: auxin polar transport1.14E-06
19GO:0046656: folic acid biosynthetic process1.66E-04
20GO:0007275: multicellular organism development2.10E-04
21GO:0009828: plant-type cell wall loosening2.18E-04
22GO:0042793: transcription from plastid promoter3.54E-04
23GO:0046654: tetrahydrofolate biosynthetic process4.72E-04
24GO:2000067: regulation of root morphogenesis4.72E-04
25GO:0000160: phosphorelay signal transduction system4.90E-04
26GO:0010480: microsporocyte differentiation5.57E-04
27GO:0035987: endodermal cell differentiation5.57E-04
28GO:0043609: regulation of carbon utilization5.57E-04
29GO:0006436: tryptophanyl-tRNA aminoacylation5.57E-04
30GO:0000066: mitochondrial ornithine transport5.57E-04
31GO:0050801: ion homeostasis5.57E-04
32GO:0034757: negative regulation of iron ion transport5.57E-04
33GO:0042659: regulation of cell fate specification5.57E-04
34GO:0090558: plant epidermis development5.57E-04
35GO:0009742: brassinosteroid mediated signaling pathway6.04E-04
36GO:0009658: chloroplast organization7.94E-04
37GO:0007389: pattern specification process9.15E-04
38GO:0006002: fructose 6-phosphate metabolic process9.15E-04
39GO:0000373: Group II intron splicing1.09E-03
40GO:0099402: plant organ development1.20E-03
41GO:1900033: negative regulation of trichome patterning1.20E-03
42GO:1904143: positive regulation of carotenoid biosynthetic process1.20E-03
43GO:0006597: spermine biosynthetic process1.20E-03
44GO:0006529: asparagine biosynthetic process1.20E-03
45GO:2000123: positive regulation of stomatal complex development1.20E-03
46GO:1902326: positive regulation of chlorophyll biosynthetic process1.20E-03
47GO:0070981: L-asparagine biosynthetic process1.20E-03
48GO:0010569: regulation of double-strand break repair via homologous recombination1.20E-03
49GO:0010271: regulation of chlorophyll catabolic process1.20E-03
50GO:0018026: peptidyl-lysine monomethylation1.20E-03
51GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.30E-03
52GO:0032502: developmental process1.35E-03
53GO:0006949: syncytium formation1.51E-03
54GO:0009736: cytokinin-activated signaling pathway1.52E-03
55GO:0010252: auxin homeostasis1.59E-03
56GO:0001578: microtubule bundle formation1.97E-03
57GO:0006760: folic acid-containing compound metabolic process1.97E-03
58GO:0006557: S-adenosylmethioninamine biosynthetic process1.97E-03
59GO:0010447: response to acidic pH1.97E-03
60GO:0090708: specification of plant organ axis polarity1.97E-03
61GO:0080117: secondary growth1.97E-03
62GO:0006000: fructose metabolic process1.97E-03
63GO:0031145: anaphase-promoting complex-dependent catabolic process1.97E-03
64GO:0009767: photosynthetic electron transport chain2.27E-03
65GO:0009416: response to light stimulus2.66E-03
66GO:0043572: plastid fission2.86E-03
67GO:2001141: regulation of RNA biosynthetic process2.86E-03
68GO:1902476: chloride transmembrane transport2.86E-03
69GO:0007231: osmosensory signaling pathway2.86E-03
70GO:0030071: regulation of mitotic metaphase/anaphase transition2.86E-03
71GO:0051639: actin filament network formation2.86E-03
72GO:0010239: chloroplast mRNA processing2.86E-03
73GO:0009800: cinnamic acid biosynthetic process2.86E-03
74GO:0033014: tetrapyrrole biosynthetic process2.86E-03
75GO:0044211: CTP salvage2.86E-03
76GO:0015696: ammonium transport2.86E-03
77GO:0046739: transport of virus in multicellular host2.86E-03
78GO:2000904: regulation of starch metabolic process2.86E-03
79GO:0009826: unidimensional cell growth2.90E-03
80GO:0008295: spermidine biosynthetic process3.85E-03
81GO:0044206: UMP salvage3.85E-03
82GO:0006346: methylation-dependent chromatin silencing3.85E-03
83GO:0048629: trichome patterning3.85E-03
84GO:0051764: actin crosslink formation3.85E-03
85GO:0051322: anaphase3.85E-03
86GO:0030104: water homeostasis3.85E-03
87GO:0072488: ammonium transmembrane transport3.85E-03
88GO:0033500: carbohydrate homeostasis3.85E-03
89GO:2000038: regulation of stomatal complex development3.85E-03
90GO:0006306: DNA methylation4.33E-03
91GO:0009904: chloroplast accumulation movement4.94E-03
92GO:0006544: glycine metabolic process4.94E-03
93GO:0009107: lipoate biosynthetic process4.94E-03
94GO:1902183: regulation of shoot apical meristem development4.94E-03
95GO:0016123: xanthophyll biosynthetic process4.94E-03
96GO:0010438: cellular response to sulfur starvation4.94E-03
97GO:0010158: abaxial cell fate specification4.94E-03
98GO:0032876: negative regulation of DNA endoreduplication4.94E-03
99GO:0010375: stomatal complex patterning4.94E-03
100GO:0009831: plant-type cell wall modification involved in multidimensional cell growth5.18E-03
101GO:0010082: regulation of root meristem growth5.18E-03
102GO:0010114: response to red light5.27E-03
103GO:0018258: protein O-linked glycosylation via hydroxyproline6.12E-03
104GO:0006563: L-serine metabolic process6.12E-03
105GO:0010405: arabinogalactan protein metabolic process6.12E-03
106GO:0010304: PSII associated light-harvesting complex II catabolic process6.12E-03
107GO:0006655: phosphatidylglycerol biosynthetic process6.12E-03
108GO:1902456: regulation of stomatal opening6.12E-03
109GO:0006796: phosphate-containing compound metabolic process6.12E-03
110GO:0048831: regulation of shoot system development6.12E-03
111GO:0010315: auxin efflux6.12E-03
112GO:0006559: L-phenylalanine catabolic process6.12E-03
113GO:0006206: pyrimidine nucleobase metabolic process6.12E-03
114GO:0009451: RNA modification6.25E-03
115GO:0010087: phloem or xylem histogenesis6.61E-03
116GO:0009664: plant-type cell wall organization7.05E-03
117GO:0009741: response to brassinosteroid7.13E-03
118GO:0009739: response to gibberellin7.16E-03
119GO:0048509: regulation of meristem development7.40E-03
120GO:1901259: chloroplast rRNA processing7.40E-03
121GO:0009903: chloroplast avoidance movement7.40E-03
122GO:0030488: tRNA methylation7.40E-03
123GO:0080086: stamen filament development7.40E-03
124GO:0009955: adaxial/abaxial pattern specification7.40E-03
125GO:0009942: longitudinal axis specification7.40E-03
126GO:0009646: response to absence of light7.67E-03
127GO:0009396: folic acid-containing compound biosynthetic process8.76E-03
128GO:0030307: positive regulation of cell growth8.76E-03
129GO:0009610: response to symbiotic fungus8.76E-03
130GO:0007050: cell cycle arrest8.76E-03
131GO:0006821: chloride transport8.76E-03
132GO:0010050: vegetative phase change8.76E-03
133GO:0048437: floral organ development8.76E-03
134GO:0010583: response to cyclopentenone9.43E-03
135GO:0031047: gene silencing by RNA9.43E-03
136GO:0042255: ribosome assembly1.02E-02
137GO:0032875: regulation of DNA endoreduplication1.02E-02
138GO:0048766: root hair initiation1.02E-02
139GO:0055075: potassium ion homeostasis1.02E-02
140GO:0000105: histidine biosynthetic process1.02E-02
141GO:0010439: regulation of glucosinolate biosynthetic process1.02E-02
142GO:0001522: pseudouridine synthesis1.02E-02
143GO:0009850: auxin metabolic process1.02E-02
144GO:0071482: cellular response to light stimulus1.17E-02
145GO:0010497: plasmodesmata-mediated intercellular transport1.17E-02
146GO:0009657: plastid organization1.17E-02
147GO:0071555: cell wall organization1.22E-02
148GO:0010027: thylakoid membrane organization1.28E-02
149GO:0006783: heme biosynthetic process1.33E-02
150GO:0009051: pentose-phosphate shunt, oxidative branch1.33E-02
151GO:2000024: regulation of leaf development1.33E-02
152GO:0031425: chloroplast RNA processing1.50E-02
153GO:0009638: phototropism1.50E-02
154GO:0042761: very long-chain fatty acid biosynthetic process1.50E-02
155GO:0035999: tetrahydrofolate interconversion1.50E-02
156GO:2000280: regulation of root development1.50E-02
157GO:1900865: chloroplast RNA modification1.50E-02
158GO:0010411: xyloglucan metabolic process1.51E-02
159GO:0009641: shade avoidance1.68E-02
160GO:0006259: DNA metabolic process1.68E-02
161GO:0031627: telomeric loop formation1.68E-02
162GO:0009299: mRNA transcription1.68E-02
163GO:0006535: cysteine biosynthetic process from serine1.68E-02
164GO:0006352: DNA-templated transcription, initiation1.86E-02
165GO:0048229: gametophyte development1.86E-02
166GO:0010015: root morphogenesis1.86E-02
167GO:0006816: calcium ion transport1.86E-02
168GO:0006265: DNA topological change1.86E-02
169GO:0009773: photosynthetic electron transport in photosystem I1.86E-02
170GO:0009682: induced systemic resistance1.86E-02
171GO:0010582: floral meristem determinacy2.05E-02
172GO:0016024: CDP-diacylglycerol biosynthetic process2.05E-02
173GO:0009637: response to blue light2.13E-02
174GO:0009785: blue light signaling pathway2.24E-02
175GO:0006006: glucose metabolic process2.24E-02
176GO:0009691: cytokinin biosynthetic process2.24E-02
177GO:0010075: regulation of meristem growth2.24E-02
178GO:0009725: response to hormone2.24E-02
179GO:2000012: regulation of auxin polar transport2.24E-02
180GO:0010628: positive regulation of gene expression2.24E-02
181GO:0009934: regulation of meristem structural organization2.44E-02
182GO:0010207: photosystem II assembly2.44E-02
183GO:0006541: glutamine metabolic process2.44E-02
184GO:0010020: chloroplast fission2.44E-02
185GO:0090351: seedling development2.65E-02
186GO:0070588: calcium ion transmembrane transport2.65E-02
187GO:0010039: response to iron ion2.65E-02
188GO:0006508: proteolysis2.72E-02
189GO:0008283: cell proliferation2.75E-02
190GO:0042546: cell wall biogenesis2.86E-02
191GO:0006071: glycerol metabolic process2.86E-02
192GO:0006833: water transport2.86E-02
193GO:0008380: RNA splicing3.03E-02
194GO:0051017: actin filament bundle assembly3.08E-02
195GO:0005992: trehalose biosynthetic process3.08E-02
196GO:0019344: cysteine biosynthetic process3.08E-02
197GO:0009944: polarity specification of adaxial/abaxial axis3.08E-02
198GO:0080147: root hair cell development3.08E-02
199GO:0000027: ribosomal large subunit assembly3.08E-02
200GO:0010073: meristem maintenance3.31E-02
201GO:0051302: regulation of cell division3.31E-02
202GO:0006418: tRNA aminoacylation for protein translation3.31E-02
203GO:0016998: cell wall macromolecule catabolic process3.54E-02
204GO:0019915: lipid storage3.54E-02
205GO:0006730: one-carbon metabolic process3.78E-02
206GO:0031348: negative regulation of defense response3.78E-02
207GO:0019748: secondary metabolic process3.78E-02
208GO:0009625: response to insect4.02E-02
209GO:0071215: cellular response to abscisic acid stimulus4.02E-02
210GO:0009686: gibberellin biosynthetic process4.02E-02
211GO:0010091: trichome branching4.26E-02
212GO:0006284: base-excision repair4.26E-02
213GO:0070417: cellular response to cold4.51E-02
214GO:0080022: primary root development4.77E-02
215GO:0008033: tRNA processing4.77E-02
216GO:0010118: stomatal movement4.77E-02
217GO:0048653: anther development4.77E-02
218GO:0000226: microtubule cytoskeleton organization4.77E-02
219GO:0009740: gibberellic acid mediated signaling pathway4.94E-02
RankGO TermAdjusted P value
1GO:0004056: argininosuccinate lyase activity0.00E+00
2GO:0071633: dihydroceramidase activity0.00E+00
3GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
4GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
5GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity5.57E-04
6GO:0052381: tRNA dimethylallyltransferase activity5.57E-04
7GO:0004830: tryptophan-tRNA ligase activity5.57E-04
8GO:0004400: histidinol-phosphate transaminase activity5.57E-04
9GO:0050139: nicotinate-N-glucosyltransferase activity5.57E-04
10GO:0051777: ent-kaurenoate oxidase activity5.57E-04
11GO:0004156: dihydropteroate synthase activity5.57E-04
12GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity5.57E-04
13GO:0005290: L-histidine transmembrane transporter activity5.57E-04
14GO:0003867: 4-aminobutyrate transaminase activity5.57E-04
15GO:0004071: aspartate-ammonia ligase activity5.57E-04
16GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity5.57E-04
17GO:0009884: cytokinin receptor activity1.20E-03
18GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.20E-03
19GO:0017118: lipoyltransferase activity1.20E-03
20GO:0043425: bHLH transcription factor binding1.20E-03
21GO:0016415: octanoyltransferase activity1.20E-03
22GO:0102083: 7,8-dihydromonapterin aldolase activity1.20E-03
23GO:0008805: carbon-monoxide oxygenase activity1.20E-03
24GO:0004150: dihydroneopterin aldolase activity1.20E-03
25GO:0000064: L-ornithine transmembrane transporter activity1.20E-03
26GO:0015929: hexosaminidase activity1.20E-03
27GO:0004563: beta-N-acetylhexosaminidase activity1.20E-03
28GO:0009672: auxin:proton symporter activity1.29E-03
29GO:0000156: phosphorelay response regulator activity1.47E-03
30GO:0016805: dipeptidase activity1.97E-03
31GO:0005034: osmosensor activity1.97E-03
32GO:0004014: adenosylmethionine decarboxylase activity1.97E-03
33GO:0046524: sucrose-phosphate synthase activity1.97E-03
34GO:0070330: aromatase activity1.97E-03
35GO:0017150: tRNA dihydrouridine synthase activity1.97E-03
36GO:0045548: phenylalanine ammonia-lyase activity1.97E-03
37GO:0010329: auxin efflux transmembrane transporter activity2.27E-03
38GO:0001872: (1->3)-beta-D-glucan binding2.86E-03
39GO:0015189: L-lysine transmembrane transporter activity2.86E-03
40GO:0015181: arginine transmembrane transporter activity2.86E-03
41GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.81E-03
42GO:0043495: protein anchor3.85E-03
43GO:0046556: alpha-L-arabinofuranosidase activity3.85E-03
44GO:0016279: protein-lysine N-methyltransferase activity3.85E-03
45GO:0001053: plastid sigma factor activity3.85E-03
46GO:0004845: uracil phosphoribosyltransferase activity3.85E-03
47GO:0004345: glucose-6-phosphate dehydrogenase activity3.85E-03
48GO:0016987: sigma factor activity3.85E-03
49GO:0005253: anion channel activity3.85E-03
50GO:0004176: ATP-dependent peptidase activity4.33E-03
51GO:0008725: DNA-3-methyladenine glycosylase activity4.94E-03
52GO:0004372: glycine hydroxymethyltransferase activity4.94E-03
53GO:0004523: RNA-DNA hybrid ribonuclease activity4.94E-03
54GO:0016773: phosphotransferase activity, alcohol group as acceptor4.94E-03
55GO:0018685: alkane 1-monooxygenase activity4.94E-03
56GO:0003727: single-stranded RNA binding5.63E-03
57GO:0008519: ammonium transmembrane transporter activity6.12E-03
58GO:0005247: voltage-gated chloride channel activity6.12E-03
59GO:2001070: starch binding6.12E-03
60GO:0004605: phosphatidate cytidylyltransferase activity6.12E-03
61GO:1990714: hydroxyproline O-galactosyltransferase activity6.12E-03
62GO:0004656: procollagen-proline 4-dioxygenase activity7.40E-03
63GO:0019900: kinase binding7.40E-03
64GO:0004124: cysteine synthase activity7.40E-03
65GO:0008195: phosphatidate phosphatase activity7.40E-03
66GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity7.40E-03
67GO:0004849: uridine kinase activity7.40E-03
68GO:0010181: FMN binding7.67E-03
69GO:0004427: inorganic diphosphatase activity8.76E-03
70GO:0003872: 6-phosphofructokinase activity8.76E-03
71GO:0016762: xyloglucan:xyloglucosyl transferase activity8.82E-03
72GO:0004518: nuclease activity9.43E-03
73GO:0004519: endonuclease activity1.04E-02
74GO:0008237: metallopeptidase activity1.14E-02
75GO:0008173: RNA methyltransferase activity1.17E-02
76GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.17E-02
77GO:0008889: glycerophosphodiester phosphodiesterase activity1.33E-02
78GO:0016798: hydrolase activity, acting on glycosyl bonds1.51E-02
79GO:0019843: rRNA binding1.62E-02
80GO:0004673: protein histidine kinase activity1.68E-02
81GO:0004805: trehalose-phosphatase activity1.68E-02
82GO:0003691: double-stranded telomeric DNA binding1.86E-02
83GO:0005089: Rho guanyl-nucleotide exchange factor activity1.86E-02
84GO:0000976: transcription regulatory region sequence-specific DNA binding2.05E-02
85GO:0003735: structural constituent of ribosome2.23E-02
86GO:0046983: protein dimerization activity2.24E-02
87GO:0004089: carbonate dehydratase activity2.24E-02
88GO:0031072: heat shock protein binding2.24E-02
89GO:0000155: phosphorelay sensor kinase activity2.24E-02
90GO:0005262: calcium channel activity2.24E-02
91GO:0009982: pseudouridine synthase activity2.24E-02
92GO:0004022: alcohol dehydrogenase (NAD) activity2.24E-02
93GO:0004871: signal transducer activity2.28E-02
94GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.44E-02
95GO:0031418: L-ascorbic acid binding3.08E-02
96GO:0043424: protein histidine kinase binding3.31E-02
97GO:0005345: purine nucleobase transmembrane transporter activity3.31E-02
98GO:0008408: 3'-5' exonuclease activity3.54E-02
99GO:0035251: UDP-glucosyltransferase activity3.54E-02
100GO:0004707: MAP kinase activity3.54E-02
101GO:0033612: receptor serine/threonine kinase binding3.54E-02
102GO:0005215: transporter activity3.78E-02
103GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds3.82E-02
104GO:0005515: protein binding4.04E-02
105GO:0016788: hydrolase activity, acting on ester bonds4.28E-02
106GO:0047134: protein-disulfide reductase activity4.51E-02
107GO:0004812: aminoacyl-tRNA ligase activity4.51E-02
108GO:0004650: polygalacturonase activity4.80E-02
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Gene type



Gene DE type