Gene: AT3G53230
     

Gene description


TAIR ID: AT3G53230

Short description: ATPase, AAA-type, CDC48 protein

Pathogen responsiveness: 1.29

General responsiveness: 1.83

Orthologous


Rice:

OS03G0151800   OS05G0519400   OS04G0617600  

Maize: No orthologous gene
Wheat:

TA.28850.1.S1_AT  


GO biological process


response to cadmium ion, positive regulation of protein catabolic process, cell division, protein transport, cell cycle


GO cellular component


nucleolus, phragmoplast, cytosol, plasma membrane, cytoskeleton, Golgi apparatus, nucleoplasm


GO molecular function


ATP binding, hydrolase activity


Protein domain


PfamPF02359, Cell division protein 48 (CDC48), N-terminal domain
PfamPF02933, Cell division protein 48 (CDC48), domain 2
PfamPF00004, ATPase family associated with various cellular activities (AAA)
SMARTSM01073, CDC48_N
SMARTSM00382, AAA
SMARTSM01072, CDC48_2

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT5G13790, AT2G43010

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 2

click to view PPI network

Differentially expressed condition


34 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE12856Col, WT, controlCol, WT, Bg h2.704.25E-07
GSE12856Col, ataf1, controlCol, ataf1, Bg h2.112.87E-06
GSE17500Col, 35S:AFB1, control 0 hCol, 35S:AFB1, PstDC3000 24 h2.692.32E-05
GSE17500Col, WT, control 0 hCol, WT, PstDC3000 24 h3.461.47E-06
GSE17500Col, miR393, control 0 hCol, miR393, PstDC3000 24 h3.136.38E-06
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h3.767.58E-10
GSE20278Col, RPL18-HF, control, polysomal RNACol, RPL18-HF, TuMV 10 d, polysomal RNA2.229.21E-04
GSE20278Col, RPL18-HF, controlCol, RPL18-HF, TuMV 10 d2.139.42E-04
GSE26679Col, WT, GC 0 hCol, WT, GC 96 h2.117.71E-10
GSE26679Col, edr1, GC 0 hCol, edr1, GC 96 h1.992.67E-09
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h2.231.42E-10
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h2.731.04E-11
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h3.199.00E-13
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h4.252.15E-14
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h4.793.30E-15
GSE45214Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 4 h2.642.02E-13
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h3.303.81E-15
GSE45214Col, npr1, PstDC3000 AvrRpt2 0 hCol, npr1, PstDC3000 AvrRpt2 4 h2.411.03E-12
GSE50526Col, WT, mock 24 hCol, WT, A. brassicicola 24 h1.724.43E-02
GSE50526Col, WT, mock 9 hCol, WT, A. brassicicola 9 h2.581.18E-03
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h3.035.04E-05
GSE5520Col, WT, control 10 hCol, WT, Cor- hrpS- 10 h2.111.79E-02
GSE5520Col, WT, control 24 hCol, WT, PstDC3000 24 h1.821.65E-02
GSE5615Col, WT, water 4 hCol, WT, HrpZ 4 h1.573.44E-03
GSE5616Col, WT, water 12 hCol, WT, P. infestans 12 h1.648.06E-05
GSE5685Col, WT, control 16 hCol, WT, Ps ES4326 AvrRpt2 16 h1.692.12E-02
GSE5685Col, WT, control 24 hCol, WT, Ps ES4326 24 h1.562.50E-02
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h4.244.33E-03
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 2-4 h3.683.02E-03
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h5.664.49E-04
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 90-105 min3.735.53E-03
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 2-4 h3.445.89E-03
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 6 h5.347.64E-04
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 90-105 min3.263.41E-03






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