Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT3G53230

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0031930: mitochondria-nucleus signaling pathway3.34E-05
2GO:0006562: proline catabolic process1.02E-04
3GO:0009266: response to temperature stimulus2.37E-04
4GO:0031349: positive regulation of defense response2.40E-04
5GO:0043066: negative regulation of apoptotic process2.40E-04
6GO:0019725: cellular homeostasis2.40E-04
7GO:0046939: nucleotide phosphorylation2.40E-04
8GO:0010133: proline catabolic process to glutamate2.40E-04
9GO:0080185: effector dependent induction by symbiont of host immune response2.40E-04
10GO:1902066: regulation of cell wall pectin metabolic process2.40E-04
11GO:0009863: salicylic acid mediated signaling pathway3.32E-04
12GO:1901672: positive regulation of systemic acquired resistance3.99E-04
13GO:0048586: regulation of long-day photoperiodism, flowering3.99E-04
14GO:0032922: circadian regulation of gene expression3.99E-04
15GO:0061158: 3'-UTR-mediated mRNA destabilization3.99E-04
16GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process3.99E-04
17GO:2000022: regulation of jasmonic acid mediated signaling pathway4.41E-04
18GO:0010104: regulation of ethylene-activated signaling pathway5.73E-04
19GO:0006537: glutamate biosynthetic process5.73E-04
20GO:0009247: glycolipid biosynthetic process9.62E-04
21GO:0045962: positive regulation of development, heterochronic1.17E-03
22GO:0001731: formation of translation preinitiation complex1.17E-03
23GO:0009617: response to bacterium1.36E-03
24GO:0009738: abscisic acid-activated signaling pathway1.60E-03
25GO:1900057: positive regulation of leaf senescence1.65E-03
26GO:0009787: regulation of abscisic acid-activated signaling pathway1.90E-03
27GO:0030162: regulation of proteolysis1.90E-03
28GO:0006491: N-glycan processing1.90E-03
29GO:0019375: galactolipid biosynthetic process1.90E-03
30GO:0045010: actin nucleation1.90E-03
31GO:0009932: cell tip growth2.17E-03
32GO:0010112: regulation of systemic acquired resistance2.45E-03
33GO:0009056: catabolic process2.45E-03
34GO:0030042: actin filament depolymerization2.74E-03
35GO:0048268: clathrin coat assembly2.74E-03
36GO:0031347: regulation of defense response2.87E-03
37GO:0045892: negative regulation of transcription, DNA-templated3.16E-03
38GO:0006486: protein glycosylation3.19E-03
39GO:0016925: protein sumoylation3.69E-03
40GO:0006626: protein targeting to mitochondrion4.02E-03
41GO:0009408: response to heat4.05E-03
42GO:0007034: vacuolar transport4.37E-03
43GO:0006446: regulation of translational initiation4.37E-03
44GO:0009414: response to water deprivation4.73E-03
45GO:0042742: defense response to bacterium4.91E-03
46GO:0045333: cellular respiration5.46E-03
47GO:0006487: protein N-linked glycosylation5.46E-03
48GO:0003333: amino acid transmembrane transport6.24E-03
49GO:0031348: negative regulation of defense response6.64E-03
50GO:0009306: protein secretion7.48E-03
51GO:0048544: recognition of pollen9.26E-03
52GO:0019760: glucosinolate metabolic process1.17E-02
53GO:0006904: vesicle docking involved in exocytosis1.22E-02
54GO:0051607: defense response to virus1.27E-02
55GO:0006970: response to osmotic stress1.30E-02
56GO:0001666: response to hypoxia1.32E-02
57GO:0009615: response to virus1.32E-02
58GO:0009816: defense response to bacterium, incompatible interaction1.38E-02
59GO:0009627: systemic acquired resistance1.43E-02
60GO:0080167: response to karrikin1.50E-02
61GO:0009737: response to abscisic acid1.54E-02
62GO:0016192: vesicle-mediated transport1.58E-02
63GO:0009817: defense response to fungus, incompatible interaction1.60E-02
64GO:0006499: N-terminal protein myristoylation1.71E-02
65GO:0009631: cold acclimation1.77E-02
66GO:0006865: amino acid transport1.83E-02
67GO:0006839: mitochondrial transport2.07E-02
68GO:0006897: endocytosis2.13E-02
69GO:0009751: response to salicylic acid2.19E-02
70GO:0048364: root development2.32E-02
71GO:0009965: leaf morphogenesis2.46E-02
72GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process2.59E-02
73GO:0042538: hyperosmotic salinity response2.66E-02
74GO:0009585: red, far-red light phototransduction2.80E-02
75GO:0010224: response to UV-B2.86E-02
76GO:0009409: response to cold2.99E-02
77GO:0006351: transcription, DNA-templated3.44E-02
78GO:0042545: cell wall modification3.52E-02
79GO:0018105: peptidyl-serine phosphorylation3.67E-02
80GO:0006396: RNA processing3.67E-02
81GO:0006468: protein phosphorylation3.85E-02
82GO:0009845: seed germination4.46E-02
83GO:0007275: multicellular organism development4.74E-02
RankGO TermAdjusted P value
1GO:0010290: chlorophyll catabolite transmembrane transporter activity0.00E+00
2GO:0005522: profilin binding0.00E+00
3GO:0015431: glutathione S-conjugate-exporting ATPase activity0.00E+00
4GO:0047429: nucleoside-triphosphate diphosphatase activity1.02E-04
5GO:0004657: proline dehydrogenase activity1.02E-04
6GO:0046481: digalactosyldiacylglycerol synthase activity1.02E-04
7GO:1901149: salicylic acid binding1.02E-04
8GO:0019948: SUMO activating enzyme activity3.99E-04
9GO:0019201: nucleotide kinase activity5.73E-04
10GO:0035250: UDP-galactosyltransferase activity5.73E-04
11GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity5.73E-04
12GO:0009916: alternative oxidase activity7.62E-04
13GO:0004040: amidase activity9.62E-04
14GO:0070696: transmembrane receptor protein serine/threonine kinase binding9.62E-04
15GO:0004017: adenylate kinase activity1.40E-03
16GO:0003730: mRNA 3'-UTR binding1.40E-03
17GO:0004559: alpha-mannosidase activity1.40E-03
18GO:0004525: ribonuclease III activity1.90E-03
19GO:0005545: 1-phosphatidylinositol binding3.05E-03
20GO:0005543: phospholipid binding3.36E-03
21GO:0008559: xenobiotic-transporting ATPase activity3.36E-03
22GO:0031625: ubiquitin protein ligase binding3.53E-03
23GO:0008378: galactosyltransferase activity3.69E-03
24GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism4.02E-03
25GO:0031072: heat shock protein binding4.02E-03
26GO:0005509: calcium ion binding4.35E-03
27GO:0003779: actin binding4.39E-03
28GO:0005524: ATP binding5.67E-03
29GO:0051087: chaperone binding5.85E-03
30GO:0005515: protein binding7.21E-03
31GO:0005102: receptor binding7.91E-03
32GO:0030276: clathrin binding8.80E-03
33GO:0042626: ATPase activity, coupled to transmembrane movement of substances9.93E-03
34GO:0051015: actin filament binding1.12E-02
35GO:0008375: acetylglucosaminyltransferase activity1.43E-02
36GO:0009931: calcium-dependent protein serine/threonine kinase activity1.43E-02
37GO:0004683: calmodulin-dependent protein kinase activity1.48E-02
38GO:0043565: sequence-specific DNA binding1.93E-02
39GO:0044212: transcription regulatory region DNA binding2.05E-02
40GO:0015171: amino acid transmembrane transporter activity3.01E-02
41GO:0045330: aspartyl esterase activity3.01E-02
42GO:0004842: ubiquitin-protein transferase activity3.07E-02
43GO:0016874: ligase activity3.44E-02
44GO:0030599: pectinesterase activity3.44E-02
45GO:0051082: unfolded protein binding3.59E-02
46GO:0016758: transferase activity, transferring hexosyl groups4.14E-02
47GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding4.62E-02
48GO:0008565: protein transporter activity4.79E-02
RankGO TermAdjusted P value
1GO:0005911: cell-cell junction1.02E-04
2GO:0016282: eukaryotic 43S preinitiation complex1.17E-03
3GO:0033290: eukaryotic 48S preinitiation complex1.40E-03
4GO:0000815: ESCRT III complex1.40E-03
5GO:0070469: respiratory chain5.85E-03
6GO:0005905: clathrin-coated pit6.24E-03
7GO:0015629: actin cytoskeleton7.06E-03
8GO:0030136: clathrin-coated vesicle7.91E-03
9GO:0005886: plasma membrane8.12E-03
10GO:0071944: cell periphery1.12E-02
11GO:0009707: chloroplast outer membrane1.60E-02
12GO:0019005: SCF ubiquitin ligase complex1.60E-02
13GO:0000325: plant-type vacuole1.77E-02
14GO:0005743: mitochondrial inner membrane2.07E-02
15GO:0005635: nuclear envelope2.94E-02
16GO:0005654: nucleoplasm4.14E-02
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Gene type



Gene DE type