Gene: AT3G52380
     

Gene description


TAIR ID: AT3G52380

Short description: chloroplast RNA-binding protein 33

Pathogen responsiveness: -0.19

General responsiveness: 1.48

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G026614  

Wheat: No orthologous gene

GO biological process


chloroplast RNA processing, mRNA processing, chloroplast rRNA processing


GO cellular component


intracellular ribonucleoprotein complex, chloroplast stroma, chloroplast, thylakoid


GO molecular function


unkown


Protein domain


PfamPF00076, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
SMARTSM00360, RRM

Metabolic pathway


Not involved in metabolic pathway


KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT4G18770

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 1

click to view PPI network

Differentially expressed condition


18 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE17464Penta, controlPenta, Flg22 2 h-1.552.54E-03
GSE17500Col, 35S:AFB1, control 0 hCol, 35S:AFB1, PstDC3000 24 h-2.091.48E-04
GSE17500Col, WT, control 0 hCol, WT, PstDC3000 24 h-2.373.03E-05
GSE17500Col, miR393, control 0 hCol, miR393, PstDC3000 24 h-2.198.88E-05
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h-3.962.29E-11
GSE21920Col, WT, mockCol, WT, Pto HopZ1a 6 h-1.559.71E-04
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-2.958.32E-13
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h-1.906.19E-10
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-2.342.63E-11
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-1.722.60E-09
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-2.215.29E-11
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h-1.774.79E-10
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h-1.842.32E-04
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h-1.686.73E-05
GSE56094Col, WT, control 10 hCol, WT, PstDC3000 10 h-2.062.57E-12
GSE56094Col, WT, control 11 hCol, WT, PstDC3000 11 h-2.055.95E-12
GSE56094Col, WT, control 12 hCol, WT, PstDC3000 12 h-1.732.19E-09
GSE56094Col, WT, control 13 hCol, WT, PstDC3000 13 h-1.842.07E-10






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