GO Enrichment Analysis of Co-expressed Genes with
AT3G52380
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 2 | GO:0015742: alpha-ketoglutarate transport | 0.00E+00 |
| 3 | GO:0042407: cristae formation | 0.00E+00 |
| 4 | GO:0015882: L-ascorbic acid transport | 0.00E+00 |
| 5 | GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 6 | GO:0018160: peptidyl-pyrromethane cofactor linkage | 0.00E+00 |
| 7 | GO:0015995: chlorophyll biosynthetic process | 5.96E-09 |
| 8 | GO:0006782: protoporphyrinogen IX biosynthetic process | 4.02E-07 |
| 9 | GO:0051085: chaperone mediated protein folding requiring cofactor | 1.44E-06 |
| 10 | GO:0009735: response to cytokinin | 2.41E-06 |
| 11 | GO:0006783: heme biosynthetic process | 3.12E-05 |
| 12 | GO:0006779: porphyrin-containing compound biosynthetic process | 3.83E-05 |
| 13 | GO:0006436: tryptophanyl-tRNA aminoacylation | 5.03E-05 |
| 14 | GO:0010028: xanthophyll cycle | 5.03E-05 |
| 15 | GO:0006568: tryptophan metabolic process | 1.23E-04 |
| 16 | GO:0006423: cysteinyl-tRNA aminoacylation | 1.23E-04 |
| 17 | GO:2000071: regulation of defense response by callose deposition | 1.23E-04 |
| 18 | GO:0006729: tetrahydrobiopterin biosynthetic process | 1.23E-04 |
| 19 | GO:0042742: defense response to bacterium | 2.00E-04 |
| 20 | GO:0006760: folic acid-containing compound metabolic process | 2.11E-04 |
| 21 | GO:0006571: tyrosine biosynthetic process | 3.09E-04 |
| 22 | GO:0015729: oxaloacetate transport | 3.09E-04 |
| 23 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 3.09E-04 |
| 24 | GO:0006986: response to unfolded protein | 3.09E-04 |
| 25 | GO:0019676: ammonia assimilation cycle | 4.15E-04 |
| 26 | GO:0015743: malate transport | 4.15E-04 |
| 27 | GO:0006221: pyrimidine nucleotide biosynthetic process | 4.15E-04 |
| 28 | GO:0046656: folic acid biosynthetic process | 4.15E-04 |
| 29 | GO:0044205: 'de novo' UMP biosynthetic process | 4.15E-04 |
| 30 | GO:0071423: malate transmembrane transport | 5.26E-04 |
| 31 | GO:0006457: protein folding | 5.97E-04 |
| 32 | GO:0006796: phosphate-containing compound metabolic process | 6.44E-04 |
| 33 | GO:0010190: cytochrome b6f complex assembly | 6.44E-04 |
| 34 | GO:0006086: acetyl-CoA biosynthetic process from pyruvate | 6.44E-04 |
| 35 | GO:0042026: protein refolding | 7.68E-04 |
| 36 | GO:0017148: negative regulation of translation | 7.68E-04 |
| 37 | GO:0046654: tetrahydrofolate biosynthetic process | 7.68E-04 |
| 38 | GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process | 8.97E-04 |
| 39 | GO:0015979: photosynthesis | 8.99E-04 |
| 40 | GO:0009787: regulation of abscisic acid-activated signaling pathway | 1.03E-03 |
| 41 | GO:0009657: plastid organization | 1.17E-03 |
| 42 | GO:0032544: plastid translation | 1.17E-03 |
| 43 | GO:0098656: anion transmembrane transport | 1.32E-03 |
| 44 | GO:0043067: regulation of programmed cell death | 1.47E-03 |
| 45 | GO:0045036: protein targeting to chloroplast | 1.63E-03 |
| 46 | GO:0009682: induced systemic resistance | 1.79E-03 |
| 47 | GO:0010020: chloroplast fission | 2.32E-03 |
| 48 | GO:0019253: reductive pentose-phosphate cycle | 2.32E-03 |
| 49 | GO:0009790: embryo development | 2.61E-03 |
| 50 | GO:0006418: tRNA aminoacylation for protein translation | 3.08E-03 |
| 51 | GO:2000022: regulation of jasmonic acid mediated signaling pathway | 3.50E-03 |
| 52 | GO:0007005: mitochondrion organization | 3.50E-03 |
| 53 | GO:0010118: stomatal movement | 4.37E-03 |
| 54 | GO:0009741: response to brassinosteroid | 4.60E-03 |
| 55 | GO:0010197: polar nucleus fusion | 4.60E-03 |
| 56 | GO:0006814: sodium ion transport | 4.83E-03 |
| 57 | GO:0002229: defense response to oomycetes | 5.32E-03 |
| 58 | GO:0009627: systemic acquired resistance | 7.40E-03 |
| 59 | GO:0048481: plant ovule development | 8.24E-03 |
| 60 | GO:0008219: cell death | 8.24E-03 |
| 61 | GO:0006499: N-terminal protein myristoylation | 8.82E-03 |
| 62 | GO:0009409: response to cold | 9.08E-03 |
| 63 | GO:0009867: jasmonic acid mediated signaling pathway | 9.73E-03 |
| 64 | GO:0031347: regulation of defense response | 1.33E-02 |
| 65 | GO:0006096: glycolytic process | 1.62E-02 |
| 66 | GO:0009620: response to fungus | 1.73E-02 |
| 67 | GO:0009624: response to nematode | 1.84E-02 |
| 68 | GO:0006414: translational elongation | 2.30E-02 |
| 69 | GO:0006633: fatty acid biosynthetic process | 2.54E-02 |
| 70 | GO:0006413: translational initiation | 2.59E-02 |
| 71 | GO:0009658: chloroplast organization | 3.71E-02 |
| 72 | GO:0048366: leaf development | 4.17E-02 |
| 73 | GO:0046686: response to cadmium ion | 4.83E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0015139: alpha-ketoglutarate transmembrane transporter activity | 0.00E+00 |
| 2 | GO:0004151: dihydroorotase activity | 0.00E+00 |
| 3 | GO:0004418: hydroxymethylbilane synthase activity | 0.00E+00 |
| 4 | GO:0015229: L-ascorbic acid transporter activity | 0.00E+00 |
| 5 | GO:0016851: magnesium chelatase activity | 1.44E-06 |
| 6 | GO:0051087: chaperone binding | 2.41E-06 |
| 7 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 5.03E-05 |
| 8 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 5.03E-05 |
| 9 | GO:0008977: prephenate dehydrogenase (NAD+) activity | 5.03E-05 |
| 10 | GO:0004853: uroporphyrinogen decarboxylase activity | 5.03E-05 |
| 11 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 5.03E-05 |
| 12 | GO:0033730: arogenate dehydrogenase (NADP+) activity | 5.03E-05 |
| 13 | GO:0004830: tryptophan-tRNA ligase activity | 5.03E-05 |
| 14 | GO:0004665: prephenate dehydrogenase (NADP+) activity | 5.03E-05 |
| 15 | GO:0102083: 7,8-dihydromonapterin aldolase activity | 1.23E-04 |
| 16 | GO:0004312: fatty acid synthase activity | 1.23E-04 |
| 17 | GO:0004817: cysteine-tRNA ligase activity | 1.23E-04 |
| 18 | GO:0000774: adenyl-nucleotide exchange factor activity | 1.23E-04 |
| 19 | GO:0015367: oxoglutarate:malate antiporter activity | 1.23E-04 |
| 20 | GO:0004150: dihydroneopterin aldolase activity | 1.23E-04 |
| 21 | GO:0051082: unfolded protein binding | 1.60E-04 |
| 22 | GO:0004751: ribose-5-phosphate isomerase activity | 2.11E-04 |
| 23 | GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity | 2.11E-04 |
| 24 | GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity | 3.09E-04 |
| 25 | GO:0015131: oxaloacetate transmembrane transporter activity | 3.09E-04 |
| 26 | GO:0016656: monodehydroascorbate reductase (NADH) activity | 3.09E-04 |
| 27 | GO:0043023: ribosomal large subunit binding | 3.09E-04 |
| 28 | GO:0016462: pyrophosphatase activity | 6.44E-04 |
| 29 | GO:0004427: inorganic diphosphatase activity | 8.97E-04 |
| 30 | GO:0015140: malate transmembrane transporter activity | 8.97E-04 |
| 31 | GO:0042803: protein homodimerization activity | 1.01E-03 |
| 32 | GO:0044183: protein binding involved in protein folding | 1.79E-03 |
| 33 | GO:0000049: tRNA binding | 1.96E-03 |
| 34 | GO:0016887: ATPase activity | 2.13E-03 |
| 35 | GO:0005315: inorganic phosphate transmembrane transporter activity | 2.14E-03 |
| 36 | GO:0004176: ATP-dependent peptidase activity | 3.29E-03 |
| 37 | GO:0008514: organic anion transmembrane transporter activity | 3.93E-03 |
| 38 | GO:0005507: copper ion binding | 3.95E-03 |
| 39 | GO:0004812: aminoacyl-tRNA ligase activity | 4.15E-03 |
| 40 | GO:0008483: transaminase activity | 6.33E-03 |
| 41 | GO:0008237: metallopeptidase activity | 6.33E-03 |
| 42 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 8.24E-03 |
| 43 | GO:0003746: translation elongation factor activity | 9.73E-03 |
| 44 | GO:0003735: structural constituent of ribosome | 1.48E-02 |
| 45 | GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups | 1.65E-02 |
| 46 | GO:0030170: pyridoxal phosphate binding | 2.33E-02 |
| 47 | GO:0005525: GTP binding | 2.53E-02 |
| 48 | GO:0003743: translation initiation factor activity | 3.04E-02 |
| 49 | GO:0042802: identical protein binding | 3.23E-02 |
| 50 | GO:0000287: magnesium ion binding | 3.66E-02 |
| 51 | GO:0004601: peroxidase activity | 3.71E-02 |
| 52 | GO:0016491: oxidoreductase activity | 4.09E-02 |
| 53 | GO:0050660: flavin adenine dinucleotide binding | 4.12E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009507: chloroplast | 3.11E-40 |
| 2 | GO:0009570: chloroplast stroma | 1.78E-27 |
| 3 | GO:0009941: chloroplast envelope | 6.21E-20 |
| 4 | GO:0009579: thylakoid | 1.28E-08 |
| 5 | GO:0009536: plastid | 2.28E-07 |
| 6 | GO:0009535: chloroplast thylakoid membrane | 2.23E-06 |
| 7 | GO:0009654: photosystem II oxygen evolving complex | 1.39E-04 |
| 8 | GO:0009706: chloroplast inner membrane | 1.60E-04 |
| 9 | GO:0010007: magnesium chelatase complex | 2.11E-04 |
| 10 | GO:0005759: mitochondrial matrix | 2.96E-04 |
| 11 | GO:0010319: stromule | 4.15E-04 |
| 12 | GO:0009539: photosystem II reaction center | 1.17E-03 |
| 13 | GO:0009543: chloroplast thylakoid lumen | 2.24E-03 |
| 14 | GO:0022626: cytosolic ribosome | 2.39E-03 |
| 15 | GO:0009534: chloroplast thylakoid | 3.21E-03 |
| 16 | GO:0019898: extrinsic component of membrane | 5.07E-03 |
| 17 | GO:0005840: ribosome | 6.56E-03 |
| 18 | GO:0009707: chloroplast outer membrane | 8.24E-03 |
| 19 | GO:0005739: mitochondrion | 1.05E-02 |
| 20 | GO:0031977: thylakoid lumen | 1.10E-02 |
| 21 | GO:0005623: cell | 2.20E-02 |
| 22 | GO:0031969: chloroplast membrane | 4.32E-02 |