co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT3G52380

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
2	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
3	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
4	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
5	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
6	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
7	GO:0042793: transcription from plastid promoter	2.35E-05
8	GO:0009658: chloroplast organization	2.70E-05
9	GO:1901259: chloroplast rRNA processing	3.34E-05
10	GO:0042372: phylloquinone biosynthetic process	3.34E-05
11	GO:0048437: floral organ development	4.52E-05
12	GO:0009742: brassinosteroid mediated signaling pathway	5.46E-05
13	GO:0009657: plastid organization	7.46E-05
14	GO:0005980: glycogen catabolic process	1.02E-04
15	GO:0000476: maturation of 4.5S rRNA	1.02E-04
16	GO:0000967: rRNA 5'-end processing	1.02E-04
17	GO:0010063: positive regulation of trichoblast fate specification	1.02E-04
18	GO:0042371: vitamin K biosynthetic process	1.02E-04
19	GO:0043686: co-translational protein modification	1.02E-04
20	GO:0043007: maintenance of rDNA	1.02E-04
21	GO:0009773: photosynthetic electron transport in photosystem I	1.56E-04
22	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.40E-04
23	GO:0018026: peptidyl-lysine monomethylation	2.40E-04
24	GO:0009662: etioplast organization	2.40E-04
25	GO:0042325: regulation of phosphorylation	2.40E-04
26	GO:1904143: positive regulation of carotenoid biosynthetic process	2.40E-04
27	GO:0008616: queuosine biosynthetic process	2.40E-04
28	GO:0034470: ncRNA processing	2.40E-04
29	GO:0045454: cell redox homeostasis	5.19E-04
30	GO:0010601: positive regulation of auxin biosynthetic process	5.73E-04
31	GO:0016556: mRNA modification	5.73E-04
32	GO:0046739: transport of virus in multicellular host	5.73E-04
33	GO:0043572: plastid fission	5.73E-04
34	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	5.73E-04
35	GO:0010071: root meristem specification	5.73E-04
36	GO:0009102: biotin biosynthetic process	5.73E-04
37	GO:0010305: leaf vascular tissue pattern formation	6.55E-04
38	GO:0006662: glycerol ether metabolic process	6.55E-04
39	GO:0022622: root system development	7.62E-04
40	GO:0032543: mitochondrial translation	9.62E-04
41	GO:0010236: plastoquinone biosynthetic process	9.62E-04
42	GO:0031365: N-terminal protein amino acid modification	9.62E-04
43	GO:0032973: amino acid export	1.17E-03
44	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.17E-03
45	GO:0048280: vesicle fusion with Golgi apparatus	1.40E-03
46	GO:0080086: stamen filament development	1.40E-03
47	GO:0009772: photosynthetic electron transport in photosystem II	1.65E-03
48	GO:0043090: amino acid import	1.65E-03
49	GO:0032880: regulation of protein localization	1.65E-03
50	GO:0009416: response to light stimulus	1.68E-03
51	GO:0046620: regulation of organ growth	1.90E-03
52	GO:0006353: DNA-templated transcription, termination	1.90E-03
53	GO:0034599: cellular response to oxidative stress	1.94E-03
54	GO:0010497: plasmodesmata-mediated intercellular transport	2.17E-03
55	GO:0046685: response to arsenic-containing substance	2.45E-03
56	GO:0048507: meristem development	2.45E-03
57	GO:0080144: amino acid homeostasis	2.45E-03
58	GO:0046916: cellular transition metal ion homeostasis	2.45E-03
59	GO:0000902: cell morphogenesis	2.45E-03
60	GO:0006896: Golgi to vacuole transport	3.05E-03
61	GO:0045036: protein targeting to chloroplast	3.05E-03
62	GO:0006820: anion transport	3.69E-03
63	GO:2000012: regulation of auxin polar transport	4.02E-03
64	GO:0010628: positive regulation of gene expression	4.02E-03
65	GO:0009718: anthocyanin-containing compound biosynthetic process	4.02E-03
66	GO:0010020: chloroplast fission	4.37E-03
67	GO:0009266: response to temperature stimulus	4.37E-03
68	GO:0080188: RNA-directed DNA methylation	4.72E-03
69	GO:0010030: positive regulation of seed germination	4.72E-03
70	GO:0006418: tRNA aminoacylation for protein translation	5.85E-03
71	GO:0009790: embryo development	6.60E-03
72	GO:0006730: one-carbon metabolic process	6.64E-03
73	GO:0009686: gibberellin biosynthetic process	7.06E-03
74	GO:0042127: regulation of cell proliferation	7.48E-03
75	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	7.91E-03
76	GO:0042147: retrograde transport, endosome to Golgi	7.91E-03
77	GO:0008284: positive regulation of cell proliferation	7.91E-03
78	GO:0042631: cellular response to water deprivation	8.35E-03
79	GO:0010268: brassinosteroid homeostasis	8.80E-03
80	GO:0009958: positive gravitropism	8.80E-03
81	GO:0009741: response to brassinosteroid	8.80E-03
82	GO:0007166: cell surface receptor signaling pathway	8.93E-03
83	GO:0009646: response to absence of light	9.26E-03
84	GO:0006623: protein targeting to vacuole	9.73E-03
85	GO:0009556: microsporogenesis	9.73E-03
86	GO:0006891: intra-Golgi vesicle-mediated transport	1.02E-02
87	GO:0016132: brassinosteroid biosynthetic process	1.02E-02
88	GO:0032502: developmental process	1.07E-02
89	GO:0016125: sterol metabolic process	1.17E-02
90	GO:0010027: thylakoid membrane organization	1.32E-02
91	GO:0015995: chlorophyll biosynthetic process	1.48E-02
92	GO:0006888: ER to Golgi vesicle-mediated transport	1.48E-02
93	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.55E-02
94	GO:0048481: plant ovule development	1.60E-02
95	GO:0048527: lateral root development	1.77E-02
96	GO:0009910: negative regulation of flower development	1.77E-02
97	GO:0030001: metal ion transport	2.07E-02
98	GO:0006281: DNA repair	2.22E-02
99	GO:0009640: photomorphogenesis	2.26E-02
100	GO:0009926: auxin polar transport	2.26E-02
101	GO:0006364: rRNA processing	2.80E-02
102	GO:0051603: proteolysis involved in cellular protein catabolic process	2.86E-02
103	GO:0009909: regulation of flower development	3.01E-02
104	GO:0048367: shoot system development	3.22E-02
105	GO:0009553: embryo sac development	3.52E-02
106	GO:0006468: protein phosphorylation	3.85E-02
107	GO:0035556: intracellular signal transduction	4.15E-02
108	GO:0045893: positive regulation of transcription, DNA-templated	4.51E-02
109	GO:0006633: fatty acid biosynthetic process	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0004823: leucine-tRNA ligase activity	0.00E+00
3	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
4	GO:0004076: biotin synthase activity	0.00E+00
5	GO:0008184: glycogen phosphorylase activity	1.02E-04
6	GO:0042586: peptide deformylase activity	1.02E-04
7	GO:0051777: ent-kaurenoate oxidase activity	1.02E-04
8	GO:0004856: xylulokinase activity	1.02E-04
9	GO:0004645: phosphorylase activity	1.02E-04
10	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.02E-04
11	GO:0008479: queuine tRNA-ribosyltransferase activity	2.40E-04
12	GO:0004180: carboxypeptidase activity	3.99E-04
13	GO:0003913: DNA photolyase activity	3.99E-04
14	GO:0002161: aminoacyl-tRNA editing activity	3.99E-04
15	GO:0004148: dihydrolipoyl dehydrogenase activity	3.99E-04
16	GO:0016805: dipeptidase activity	3.99E-04
17	GO:0047134: protein-disulfide reductase activity	5.65E-04
18	GO:0004791: thioredoxin-disulfide reductase activity	7.02E-04
19	GO:0004659: prenyltransferase activity	7.62E-04
20	GO:0016279: protein-lysine N-methyltransferase activity	7.62E-04
21	GO:0005525: GTP binding	7.87E-04
22	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	9.07E-04
23	GO:0016773: phosphotransferase activity, alcohol group as acceptor	9.62E-04
24	GO:0004629: phospholipase C activity	1.17E-03
25	GO:0016208: AMP binding	1.17E-03
26	GO:0004435: phosphatidylinositol phospholipase C activity	1.40E-03
27	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.40E-03
28	GO:0046914: transition metal ion binding	2.17E-03
29	GO:0008559: xenobiotic-transporting ATPase activity	3.36E-03
30	GO:0004089: carbonate dehydratase activity	4.02E-03
31	GO:0019888: protein phosphatase regulator activity	4.02E-03
32	GO:0008083: growth factor activity	4.37E-03
33	GO:0015035: protein disulfide oxidoreductase activity	4.66E-03
34	GO:0004176: ATP-dependent peptidase activity	6.24E-03
35	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	7.28E-03
36	GO:0004812: aminoacyl-tRNA ligase activity	7.91E-03
37	GO:0008080: N-acetyltransferase activity	8.80E-03
38	GO:0008168: methyltransferase activity	1.16E-02
39	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	1.22E-02
40	GO:0008237: metallopeptidase activity	1.22E-02
41	GO:0019825: oxygen binding	1.31E-02
42	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.60E-02
43	GO:0004222: metalloendopeptidase activity	1.71E-02
44	GO:0000149: SNARE binding	2.01E-02
45	GO:0005506: iron ion binding	2.01E-02
46	GO:0051539: 4 iron, 4 sulfur cluster binding	2.07E-02
47	GO:0003924: GTPase activity	2.22E-02
48	GO:0005484: SNAP receptor activity	2.26E-02
49	GO:0004185: serine-type carboxypeptidase activity	2.26E-02
50	GO:0051537: 2 iron, 2 sulfur cluster binding	2.39E-02
51	GO:0005524: ATP binding	2.43E-02
52	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.52E-02
53	GO:0003777: microtubule motor activity	3.01E-02
54	GO:0015171: amino acid transmembrane transporter activity	3.01E-02
55	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.22E-02
56	GO:0020037: heme binding	3.62E-02
57	GO:0008026: ATP-dependent helicase activity	3.75E-02
58	GO:0003723: RNA binding	3.91E-02
59	GO:0019843: rRNA binding	4.22E-02
60	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.30E-02
61	GO:0030170: pyridoxal phosphate binding	4.54E-02
62	GO:0008565: protein transporter activity	4.79E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	1.61E-10
2	GO:0009570: chloroplast stroma	4.42E-08
3	GO:0009295: nucleoid	6.72E-05
4	GO:0042644: chloroplast nucleoid	9.24E-05
5	GO:0009706: chloroplast inner membrane	5.54E-04
6	GO:0042646: plastid nucleoid	5.73E-04
7	GO:0005655: nucleolar ribonuclease P complex	1.40E-03
8	GO:0009536: plastid	1.61E-03
9	GO:0012507: ER to Golgi transport vesicle membrane	1.90E-03
10	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.45E-03
11	GO:0000159: protein phosphatase type 2A complex	3.36E-03
12	GO:0009508: plastid chromosome	4.02E-03
13	GO:0009941: chloroplast envelope	5.32E-03
14	GO:0005615: extracellular space	8.73E-03
15	GO:0005789: endoplasmic reticulum membrane	9.33E-03
16	GO:0005778: peroxisomal membrane	1.22E-02
17	GO:0031969: chloroplast membrane	1.50E-02
18	GO:0009707: chloroplast outer membrane	1.60E-02
19	GO:0000325: plant-type vacuole	1.77E-02
20	GO:0031201: SNARE complex	2.13E-02
21	GO:0031902: late endosome membrane	2.13E-02
22	GO:0009543: chloroplast thylakoid lumen	4.22E-02
23	GO:0005623: cell	4.30E-02