gene detail

Gene description

TAIR ID: AT3G45140

Short description: lipoxygenase 2

Pathogen responsiveness: -0.77

General responsiveness: 3.59

Orthologous

Rice: No orthologous gene

Maize:

Wheat: No orthologous gene

GO biological process

lipid oxidation, response to jasmonic acid, oxylipin biosynthetic process, jasmonic acid biosynthetic process, response to herbivore, green leaf volatile biosynthetic process, response to other organism, response to water deprivation, oxidation-reduction process, response to fungus, response to wounding, response to bacterium

GO cellular component

chloroplast thylakoid membrane, chloroplast stroma, chloroplast envelope, chloroplast, cytoplasm

GO molecular function

metal ion binding, protein binding, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, linoleate 13S-lipoxygenase activity

Protein domain

Pfam	PF01477, PLAT/LH2 domain
Pfam	PF00305, Lipoxygenase
SMART	SM00308, LH2

Metabolic pathway

PWY-735: jasmonic acid biosynthesis
PWY-5410: traumatin and (Z)-3-hexen-1-yl acetate biosynthesis

KEGG pathway

PATH:ath00591: Linoleic acid metabolism
PATH:ath00592: alpha-Linolenic acid metabolism

Transcriptional regulation

Regulator:
AT1G52890, AT5G01900, AT4G36920, AT3G15500, AT1G24260, AT1G32640, AT2G24570, AT4G31550

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 4

click to view PPI network

Coexpression network

GSE13739_EDS16_GO view

Differentially expressed condition

9 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	2.15	1.49E-05
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	2.06	9.55E-06
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	2.02	1.90E-05
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	2.19	2.57E-05
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	1.90	9.64E-05
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	2.68	9.31E-03
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.71	5.11E-04
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	3.31	1.34E-07
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 6 h	-1.60	3.70E-03