gene detail

Gene description

TAIR ID: AT3G14390

Short description: Pyridoxal-dependent decarboxylase family protein

Pathogen responsiveness: -1.44

General responsiveness: -2.47

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

lysine biosynthetic process via diaminopimelate

GO cellular component

chloroplast stroma, chloroplast

GO molecular function

diaminopimelate decarboxylase activity

Protein domain

Pfam	PF02784, Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Pfam	PF00278, Pyridoxal-dependent decarboxylase, C-terminal sheet domain

Metabolic pathway

PWY-724: superpathway of lysine, threonine and methionine biosynthesis II
PWY-5097: lysine biosynthesis VI

KEGG pathway

PATH:ath01230: Biosynthesis of amino acids
PATH:ath00300: Lysine biosynthesis

Transcriptional regulation

Regulator:
AT1G51600, AT1G24260, AT5G61850, AT4G36990

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

6 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.56	4.70E-05
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.70	3.52E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.94	3.93E-10
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.72	3.17E-02
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.76	2.41E-12
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.71	5.08E-12