Gene: AT3G08940
     

Gene description


TAIR ID: AT3G08940

Short description: light harvesting complex photosystem II

Pathogen responsiveness: 0.92

General responsiveness: 3.41

Orthologous


Rice: No orthologous gene
Maize: No orthologous gene
Wheat: No orthologous gene

GO biological process


response to blue light, protein-chromophore linkage, response to cytokinin, photosynthesis, light harvesting in photosystem I, response to far red light, response to red light


GO cellular component


chloroplast thylakoid membrane, chloroplast envelope, chloroplast thylakoid, chloroplast, plastoglobule, photosystem II, photosystem I, thylakoid, membrane, integral component of membrane


GO molecular function


chlorophyll binding, pigment binding, metal ion binding


Protein domain


PfamPF00504, Chlorophyll A-B binding protein

Metabolic pathway


Not involved in metabolic pathway


Transcriptional regulation


Regulator:
AT2G43010, AT2G47190

Target:
none

Protein-protein interaction network


The number of partners (degree) is: 1

click to view PPI network

Differentially expressed condition


36 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE13739Col, WT, control 0 hCol, WT, G.orontii 6 h-2.437.67E-18
GSE13739Col, eds, control 0 hCol, eds, G.orontii 6 h-2.419.98E-18
GSE17464Laer, JA+Flg22 0 hLaer, JA+Flg22 2 h-2.347.43E-03
GSE17464Laer, controlLaer, Flg22 2 h-2.108.73E-03
GSE17464Penta, controlPenta, Flg22 2 h-2.353.45E-03
GSE18978Col, WT, control 24 hCol, WT, PsmES4326 24 h-2.786.31E-07
GSE21920Col, WT, mockCol, WT, Pto HopZ1a 6 h-1.561.24E-05
GSE26679Col, WT, GC 0 hCol, WT, GC 36 h-2.187.57E-14
GSE26679Col, edr1, GC 0 hCol, edr1, GC 36 h-1.651.03E-11
GSE37269Ei2, WT, controlEi2, WT, TEV 21 d-1.766.76E-03
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-5.313.92E-14
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h-2.591.40E-09
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-6.225.73E-15
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-2.063.43E-08
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 8 h-4.394.98E-13
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h-1.595.21E-10
GSE5520Col, WT, control 10 hCol, WT, Cor- 10 h-3.091.15E-04
GSE5520Col, WT, control 7 hCol, WT, PstDC3000 7 h-3.342.73E-06
GSE56094Col, WT, control 10 hCol, WT, PstDC3000 10 h-3.391.70E-13
GSE56094Col, WT, control 11 hCol, WT, PstDC3000 11 h-3.281.68E-12
GSE56094Col, WT, control 11 hCol, WT, hrpA- 11 h-1.902.72E-05
GSE56094Col, WT, control 12 hCol, WT, PstDC3000 12 h-3.091.71E-11
GSE56094Col, WT, control 13 hCol, WT, PstDC3000 13 h-2.881.36E-10
GSE56094Col, WT, control 4 hCol, WT, PstDC3000 4 h-1.791.48E-04
GSE56094Col, WT, control 4 hCol, WT, hrpA- 4 h-1.661.92E-03
GSE56094Col, WT, control 5 hCol, WT, PstDC3000 5 h-1.591.13E-03
GSE56094Col, WT, control 6 hCol, WT, PstDC3000 6 h-1.923.62E-05
GSE56094Col, WT, control 7 hCol, WT, PstDC3000 7 h-1.942.83E-05
GSE56094Col, WT, control 8 hCol, WT, PstDC3000 8 h-2.436.02E-08
GSE56094Col, WT, control 8 hCol, WT, hrpA- 8 h-1.779.90E-05
GSE56094Col, WT, control 9 hCol, WT, PstDC3000 9 h-2.981.44E-10
GSE56094Col, WT, control 9 hCol, WT, hrpA- 9 h-1.923.39E-05
GSE58954Col, WT, Psm AvrRpt2 0 hCol, WT, Psm AvrRpt2 6 h-2.184.62E-04
GSE6176Col, WT, control 12 hCol, WT, PstDC3000 12 h-1.973.81E-05
GSE9674Ws-4, AtMYB30 ox, controlWs-4, AtMYB30 ox, Xanthomonas strain Xcc147 6 h-1.822.41E-02
GSE9674Ws-4, WT, controlWs-4, WT, Xanthomonas strain Xcc147 6 h-1.614.63E-02






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