gene detail

Gene description

TAIR ID: AT2G47590

Short description: photolyase/blue-light receptor 2

Pathogen responsiveness: 0.02

General responsiveness: 0.94

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G158662

Wheat: No orthologous gene

GO biological process

protein-chromophore linkage, DNA repair

GO cellular component

nucleus

GO molecular function

photoreceptor activity, DNA photolyase activity

Protein domain

Pfam	PF00875, DNA photolyase

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

No regulation information

Protein-protein interaction network

The number of partners (degree) is: 4

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

22 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE11807	Col, erf104 ko, water 4 h	Col, erf104 ko, Flg22 4 h	-1.56	1.77E-02
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	-1.55	1.36E-07
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-1.72	7.25E-05
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.99	1.10E-05
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.99	1.86E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-3.33	6.47E-11
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	-1.63	2.04E-04
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.84	1.31E-02
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-2.92	7.99E-15
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-2.17	5.90E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.08	8.09E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-2.04	1.30E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-2.40	9.07E-14
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-1.64	1.72E-09
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-2.23	2.36E-04
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-2.39	7.90E-06
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.20	2.94E-16
GSE56094	Col, WT, control 10 h	Col, WT, hrpA- 10 h	-1.60	3.96E-09
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-1.60	3.68E-10
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.72	3.22E-11
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-1.85	1.16E-12
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-1.62	2.42E-03