Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G47590

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0080094: response to trehalose-6-phosphate0.00E+00
2GO:0009715: chalcone biosynthetic process0.00E+00
3GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
4GO:0042407: cristae formation0.00E+00
5GO:0005996: monosaccharide metabolic process0.00E+00
6GO:0007638: mechanosensory behavior0.00E+00
7GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
8GO:0009946: proximal/distal axis specification0.00E+00
9GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
10GO:0045740: positive regulation of DNA replication0.00E+00
11GO:0070125: mitochondrial translational elongation0.00E+00
12GO:0015822: ornithine transport0.00E+00
13GO:0010020: chloroplast fission9.47E-07
14GO:0019253: reductive pentose-phosphate cycle9.47E-07
15GO:0016117: carotenoid biosynthetic process6.88E-06
16GO:0043572: plastid fission2.27E-05
17GO:0007231: osmosensory signaling pathway2.27E-05
18GO:0046686: response to cadmium ion4.11E-05
19GO:0033500: carbohydrate homeostasis4.12E-05
20GO:0006546: glycine catabolic process4.12E-05
21GO:0009658: chloroplast organization4.95E-05
22GO:0016123: xanthophyll biosynthetic process6.58E-05
23GO:0006418: tRNA aminoacylation for protein translation8.17E-05
24GO:0006730: one-carbon metabolic process1.08E-04
25GO:0045454: cell redox homeostasis1.31E-04
26GO:0017148: negative regulation of translation1.32E-04
27GO:0006810: transport1.55E-04
28GO:0042742: defense response to bacterium2.15E-04
29GO:0008610: lipid biosynthetic process2.22E-04
30GO:0007155: cell adhesion2.22E-04
31GO:0006169: adenosine salvage2.43E-04
32GO:0006438: valyl-tRNA aminoacylation2.43E-04
33GO:0010442: guard cell morphogenesis2.43E-04
34GO:0006659: phosphatidylserine biosynthetic process2.43E-04
35GO:0000066: mitochondrial ornithine transport2.43E-04
36GO:0019510: S-adenosylhomocysteine catabolic process2.43E-04
37GO:0032544: plastid translation2.74E-04
38GO:0043085: positive regulation of catalytic activity5.33E-04
39GO:0000272: polysaccharide catabolic process5.33E-04
40GO:0018119: peptidyl-cysteine S-nitrosylation5.33E-04
41GO:0006415: translational termination5.33E-04
42GO:0009629: response to gravity5.39E-04
43GO:1903338: regulation of cell wall organization or biogenesis5.39E-04
44GO:0033353: S-adenosylmethionine cycle5.39E-04
45GO:0010086: embryonic root morphogenesis5.39E-04
46GO:0010069: zygote asymmetric cytokinesis in embryo sac5.39E-04
47GO:0015712: hexose phosphate transport5.39E-04
48GO:0006423: cysteinyl-tRNA aminoacylation5.39E-04
49GO:0030388: fructose 1,6-bisphosphate metabolic process5.39E-04
50GO:2000123: positive regulation of stomatal complex development5.39E-04
51GO:0010424: DNA methylation on cytosine within a CG sequence5.39E-04
52GO:0010275: NAD(P)H dehydrogenase complex assembly5.39E-04
53GO:0043039: tRNA aminoacylation5.39E-04
54GO:0052541: plant-type cell wall cellulose metabolic process5.39E-04
55GO:0009735: response to cytokinin5.89E-04
56GO:0009767: photosynthetic electron transport chain6.91E-04
57GO:0006000: fructose metabolic process8.75E-04
58GO:0010581: regulation of starch biosynthetic process8.75E-04
59GO:0035436: triose phosphate transmembrane transport8.75E-04
60GO:0006696: ergosterol biosynthetic process8.75E-04
61GO:0010338: leaf formation8.75E-04
62GO:0007017: microtubule-based process1.17E-03
63GO:0009052: pentose-phosphate shunt, non-oxidative branch1.25E-03
64GO:0033014: tetrapyrrole biosynthetic process1.25E-03
65GO:0071329: cellular response to sucrose stimulus1.25E-03
66GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.25E-03
67GO:0061077: chaperone-mediated protein folding1.28E-03
68GO:0009294: DNA mediated transformation1.53E-03
69GO:0045088: regulation of innate immune response1.67E-03
70GO:0045727: positive regulation of translation1.67E-03
71GO:2000038: regulation of stomatal complex development1.67E-03
72GO:0006021: inositol biosynthetic process1.67E-03
73GO:0009902: chloroplast relocation1.67E-03
74GO:0015713: phosphoglycerate transport1.67E-03
75GO:0009694: jasmonic acid metabolic process1.67E-03
76GO:0006542: glutamine biosynthetic process1.67E-03
77GO:0019676: ammonia assimilation cycle1.67E-03
78GO:0019464: glycine decarboxylation via glycine cleavage system1.67E-03
79GO:0009765: photosynthesis, light harvesting1.67E-03
80GO:0006096: glycolytic process1.98E-03
81GO:0010375: stomatal complex patterning2.13E-03
82GO:0010236: plastoquinone biosynthetic process2.13E-03
83GO:0016120: carotene biosynthetic process2.13E-03
84GO:0044209: AMP salvage2.13E-03
85GO:0009791: post-embryonic development2.40E-03
86GO:0019252: starch biosynthetic process2.40E-03
87GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity2.62E-03
88GO:0006796: phosphate-containing compound metabolic process2.62E-03
89GO:0048831: regulation of shoot system development2.62E-03
90GO:0010190: cytochrome b6f complex assembly2.62E-03
91GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.62E-03
92GO:0006555: methionine metabolic process2.62E-03
93GO:0070814: hydrogen sulfide biosynthetic process2.62E-03
94GO:0006458: 'de novo' protein folding3.15E-03
95GO:0042026: protein refolding3.15E-03
96GO:0048509: regulation of meristem development3.15E-03
97GO:0009094: L-phenylalanine biosynthetic process3.15E-03
98GO:0008272: sulfate transport3.72E-03
99GO:0000082: G1/S transition of mitotic cell cycle3.72E-03
100GO:0007050: cell cycle arrest3.72E-03
101GO:0005978: glycogen biosynthetic process4.31E-03
102GO:0031540: regulation of anthocyanin biosynthetic process4.31E-03
103GO:0034968: histone lysine methylation4.31E-03
104GO:0019430: removal of superoxide radicals4.93E-03
105GO:0048193: Golgi vesicle transport4.93E-03
106GO:0009657: plastid organization4.93E-03
107GO:0006002: fructose 6-phosphate metabolic process4.93E-03
108GO:0006075: (1->3)-beta-D-glucan biosynthetic process4.93E-03
109GO:0045490: pectin catabolic process5.03E-03
110GO:0006783: heme biosynthetic process5.59E-03
111GO:0006754: ATP biosynthetic process5.59E-03
112GO:0048589: developmental growth5.59E-03
113GO:0016051: carbohydrate biosynthetic process6.13E-03
114GO:0035999: tetrahydrofolate interconversion6.27E-03
115GO:0006349: regulation of gene expression by genetic imprinting6.27E-03
116GO:0010380: regulation of chlorophyll biosynthetic process6.27E-03
117GO:0008356: asymmetric cell division6.27E-03
118GO:0043067: regulation of programmed cell death6.27E-03
119GO:0006779: porphyrin-containing compound biosynthetic process6.27E-03
120GO:0006839: mitochondrial transport6.98E-03
121GO:0009970: cellular response to sulfate starvation6.99E-03
122GO:0000103: sulfate assimilation6.99E-03
123GO:0006259: DNA metabolic process6.99E-03
124GO:0010192: mucilage biosynthetic process6.99E-03
125GO:0019684: photosynthesis, light reaction7.73E-03
126GO:0006816: calcium ion transport7.73E-03
127GO:0006265: DNA topological change7.73E-03
128GO:0009773: photosynthetic electron transport in photosystem I7.73E-03
129GO:0010216: maintenance of DNA methylation7.73E-03
130GO:0009744: response to sucrose7.90E-03
131GO:0010102: lateral root morphogenesis9.29E-03
132GO:0006006: glucose metabolic process9.29E-03
133GO:0050826: response to freezing9.29E-03
134GO:0006094: gluconeogenesis9.29E-03
135GO:0005986: sucrose biosynthetic process9.29E-03
136GO:0071555: cell wall organization9.55E-03
137GO:0010207: photosystem II assembly1.01E-02
138GO:0080188: RNA-directed DNA methylation1.10E-02
139GO:0090351: seedling development1.10E-02
140GO:0070588: calcium ion transmembrane transport1.10E-02
141GO:0009833: plant-type primary cell wall biogenesis1.18E-02
142GO:0006071: glycerol metabolic process1.18E-02
143GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.20E-02
144GO:0009944: polarity specification of adaxial/abaxial axis1.27E-02
145GO:0007010: cytoskeleton organization1.27E-02
146GO:0009116: nucleoside metabolic process1.27E-02
147GO:0048367: shoot system development1.30E-02
148GO:0009695: jasmonic acid biosynthetic process1.37E-02
149GO:0010026: trichome differentiation1.37E-02
150GO:0031408: oxylipin biosynthetic process1.46E-02
151GO:0042545: cell wall modification1.48E-02
152GO:0007005: mitochondrion organization1.56E-02
153GO:0080092: regulation of pollen tube growth1.56E-02
154GO:0042631: cellular response to water deprivation1.97E-02
155GO:0000271: polysaccharide biosynthetic process1.97E-02
156GO:0008360: regulation of cell shape2.07E-02
157GO:0045489: pectin biosynthetic process2.07E-02
158GO:0006662: glycerol ether metabolic process2.07E-02
159GO:0010197: polar nucleus fusion2.07E-02
160GO:0008152: metabolic process2.14E-02
161GO:0006814: sodium ion transport2.18E-02
162GO:0007059: chromosome segregation2.18E-02
163GO:0009790: embryo development2.23E-02
164GO:0008654: phospholipid biosynthetic process2.29E-02
165GO:0006633: fatty acid biosynthetic process2.40E-02
166GO:0071554: cell wall organization or biogenesis2.41E-02
167GO:0010583: response to cyclopentenone2.52E-02
168GO:0016032: viral process2.52E-02
169GO:0007264: small GTPase mediated signal transduction2.52E-02
170GO:0010090: trichome morphogenesis2.64E-02
171GO:0007267: cell-cell signaling2.88E-02
172GO:0010027: thylakoid membrane organization3.13E-02
173GO:0009615: response to virus3.13E-02
174GO:0009617: response to bacterium3.15E-02
175GO:0010029: regulation of seed germination3.26E-02
176GO:0048573: photoperiodism, flowering3.52E-02
177GO:0016311: dephosphorylation3.65E-02
178GO:0016049: cell growth3.65E-02
179GO:0048481: plant ovule development3.78E-02
180GO:0009817: defense response to fungus, incompatible interaction3.78E-02
181GO:0030244: cellulose biosynthetic process3.78E-02
182GO:0009416: response to light stimulus3.87E-02
183GO:0009832: plant-type cell wall biogenesis3.92E-02
184GO:0010311: lateral root formation3.92E-02
185GO:0048767: root hair elongation3.92E-02
186GO:0000160: phosphorelay signal transduction system3.92E-02
187GO:0009813: flavonoid biosynthetic process3.92E-02
188GO:0009793: embryo development ending in seed dormancy3.95E-02
189GO:0009611: response to wounding3.97E-02
190GO:0009407: toxin catabolic process4.05E-02
191GO:0048527: lateral root development4.19E-02
192GO:0007568: aging4.19E-02
193GO:0009910: negative regulation of flower development4.19E-02
194GO:0009867: jasmonic acid mediated signaling pathway4.48E-02
195GO:0009637: response to blue light4.48E-02
196GO:0009853: photorespiration4.48E-02
197GO:0034599: cellular response to oxidative stress4.62E-02
198GO:0009409: response to cold4.73E-02
199GO:0055114: oxidation-reduction process4.82E-02
RankGO TermAdjusted P value
1GO:0016210: naringenin-chalcone synthase activity0.00E+00
2GO:0019955: cytokine binding0.00E+00
3GO:0008962: phosphatidylglycerophosphatase activity0.00E+00
4GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
5GO:0045435: lycopene epsilon cyclase activity0.00E+00
6GO:0004822: isoleucine-tRNA ligase activity0.00E+00
7GO:0030795: jasmonate O-methyltransferase activity0.00E+00
8GO:0046905: phytoene synthase activity0.00E+00
9GO:0102078: methyl jasmonate methylesterase activity0.00E+00
10GO:0009885: transmembrane histidine kinase cytokinin receptor activity0.00E+00
11GO:0030598: rRNA N-glycosylase activity0.00E+00
12GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
13GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
14GO:0051920: peroxiredoxin activity1.91E-06
15GO:0016209: antioxidant activity4.69E-06
16GO:0016149: translation release factor activity, codon specific2.27E-05
17GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.32E-04
18GO:0004812: aminoacyl-tRNA ligase activity1.56E-04
19GO:0004013: adenosylhomocysteinase activity2.43E-04
20GO:0004831: tyrosine-tRNA ligase activity2.43E-04
21GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity2.43E-04
22GO:0004325: ferrochelatase activity2.43E-04
23GO:0004832: valine-tRNA ligase activity2.43E-04
24GO:0051996: squalene synthase activity2.43E-04
25GO:0010313: phytochrome binding2.43E-04
26GO:0004001: adenosine kinase activity2.43E-04
27GO:0047259: glucomannan 4-beta-mannosyltransferase activity2.43E-04
28GO:0003747: translation release factor activity3.32E-04
29GO:0008047: enzyme activator activity4.61E-04
30GO:0008825: cyclopropane-fatty-acyl-phospholipid synthase activity5.39E-04
31GO:0000064: L-ornithine transmembrane transporter activity5.39E-04
32GO:0004310: farnesyl-diphosphate farnesyltransferase activity5.39E-04
33GO:0004512: inositol-3-phosphate synthase activity5.39E-04
34GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity5.39E-04
35GO:0009884: cytokinin receptor activity5.39E-04
36GO:0010291: carotene beta-ring hydroxylase activity5.39E-04
37GO:0008967: phosphoglycolate phosphatase activity5.39E-04
38GO:0004618: phosphoglycerate kinase activity5.39E-04
39GO:0010297: heteropolysaccharide binding5.39E-04
40GO:0004326: tetrahydrofolylpolyglutamate synthase activity5.39E-04
41GO:0004047: aminomethyltransferase activity5.39E-04
42GO:0004312: fatty acid synthase activity5.39E-04
43GO:0004817: cysteine-tRNA ligase activity5.39E-04
44GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.39E-04
45GO:0002161: aminoacyl-tRNA editing activity8.75E-04
46GO:0004148: dihydrolipoyl dehydrogenase activity8.75E-04
47GO:0004751: ribose-5-phosphate isomerase activity8.75E-04
48GO:0004781: sulfate adenylyltransferase (ATP) activity8.75E-04
49GO:0005034: osmosensor activity8.75E-04
50GO:0071917: triose-phosphate transmembrane transporter activity8.75E-04
51GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity8.75E-04
52GO:0004375: glycine dehydrogenase (decarboxylating) activity1.25E-03
53GO:0048027: mRNA 5'-UTR binding1.25E-03
54GO:0004365: glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity1.25E-03
55GO:0008508: bile acid:sodium symporter activity1.25E-03
56GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.25E-03
57GO:0008878: glucose-1-phosphate adenylyltransferase activity1.67E-03
58GO:0015120: phosphoglycerate transmembrane transporter activity1.67E-03
59GO:0004659: prenyltransferase activity1.67E-03
60GO:0047769: arogenate dehydratase activity1.67E-03
61GO:0004664: prephenate dehydratase activity1.67E-03
62GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor1.67E-03
63GO:0004356: glutamate-ammonia ligase activity2.13E-03
64GO:0004791: thioredoxin-disulfide reductase activity2.24E-03
65GO:0019901: protein kinase binding2.40E-03
66GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity2.62E-03
67GO:0016462: pyrophosphatase activity2.62E-03
68GO:0102229: amylopectin maltohydrolase activity2.62E-03
69GO:0042578: phosphoric ester hydrolase activity2.62E-03
70GO:0080030: methyl indole-3-acetate esterase activity2.62E-03
71GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.93E-03
72GO:0016759: cellulose synthase activity3.11E-03
73GO:0051753: mannan synthase activity3.15E-03
74GO:0016161: beta-amylase activity3.15E-03
75GO:0003886: DNA (cytosine-5-)-methyltransferase activity3.15E-03
76GO:0005200: structural constituent of cytoskeleton3.31E-03
77GO:0016597: amino acid binding3.50E-03
78GO:0004427: inorganic diphosphatase activity3.72E-03
79GO:0019899: enzyme binding3.72E-03
80GO:0043295: glutathione binding3.72E-03
81GO:0016757: transferase activity, transferring glycosyl groups4.28E-03
82GO:0003924: GTPase activity4.47E-03
83GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity4.93E-03
84GO:0008135: translation factor activity, RNA binding4.93E-03
85GO:0003843: 1,3-beta-D-glucan synthase activity4.93E-03
86GO:0008889: glycerophosphodiester phosphodiesterase activity5.59E-03
87GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism5.59E-03
88GO:0003746: translation elongation factor activity6.13E-03
89GO:0004673: protein histidine kinase activity6.99E-03
90GO:0005089: Rho guanyl-nucleotide exchange factor activity7.73E-03
91GO:0044183: protein binding involved in protein folding7.73E-03
92GO:0000049: tRNA binding8.49E-03
93GO:0004601: peroxidase activity8.77E-03
94GO:0005198: structural molecule activity8.88E-03
95GO:0004565: beta-galactosidase activity9.29E-03
96GO:0000155: phosphorelay sensor kinase activity9.29E-03
97GO:0005262: calcium channel activity9.29E-03
98GO:0051287: NAD binding9.58E-03
99GO:0005524: ATP binding1.14E-02
100GO:0045330: aspartyl esterase activity1.18E-02
101GO:0005528: FK506 binding1.27E-02
102GO:0004857: enzyme inhibitor activity1.27E-02
103GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups1.30E-02
104GO:0043424: protein histidine kinase binding1.37E-02
105GO:0030599: pectinesterase activity1.43E-02
106GO:0022857: transmembrane transporter activity1.43E-02
107GO:0004176: ATP-dependent peptidase activity1.46E-02
108GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.56E-02
109GO:0030570: pectate lyase activity1.66E-02
110GO:0016760: cellulose synthase (UDP-forming) activity1.66E-02
111GO:0005507: copper ion binding1.82E-02
112GO:0016758: transferase activity, transferring hexosyl groups1.86E-02
113GO:0018024: histone-lysine N-methyltransferase activity1.86E-02
114GO:0047134: protein-disulfide reductase activity1.86E-02
115GO:0019843: rRNA binding1.91E-02
116GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.96E-02
117GO:0005515: protein binding2.07E-02
118GO:0005355: glucose transmembrane transporter activity2.18E-02
119GO:0050662: coenzyme binding2.18E-02
120GO:0005525: GTP binding2.25E-02
121GO:0048038: quinone binding2.41E-02
122GO:0004518: nuclease activity2.52E-02
123GO:0008483: transaminase activity2.88E-02
124GO:0008237: metallopeptidase activity2.88E-02
125GO:0016413: O-acetyltransferase activity3.01E-02
126GO:0016787: hydrolase activity3.49E-02
127GO:0003824: catalytic activity3.50E-02
128GO:0004721: phosphoprotein phosphatase activity3.52E-02
129GO:0004222: metalloendopeptidase activity4.05E-02
130GO:0050897: cobalt ion binding4.19E-02
131GO:0003993: acid phosphatase activity4.62E-02
132GO:0050661: NADP binding4.91E-02
RankGO TermAdjusted P value
1GO:0030931: heterotetrameric ADPG pyrophosphorylase complex0.00E+00
2GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
3GO:0009571: proplastid stroma0.00E+00
4GO:0009507: chloroplast1.14E-25
5GO:0009570: chloroplast stroma3.28E-24
6GO:0009941: chloroplast envelope1.81E-17
7GO:0009535: chloroplast thylakoid membrane2.26E-10
8GO:0009579: thylakoid5.58E-09
9GO:0048046: apoplast2.34E-06
10GO:0009543: chloroplast thylakoid lumen6.13E-06
11GO:0010319: stromule2.55E-05
12GO:0009654: photosystem II oxygen evolving complex8.17E-05
13GO:0031969: chloroplast membrane8.50E-05
14GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)3.32E-04
15GO:0009536: plastid3.68E-04
16GO:0031225: anchored component of membrane4.57E-04
17GO:0010287: plastoglobule5.21E-04
18GO:0045254: pyruvate dehydrogenase complex5.39E-04
19GO:0000427: plastid-encoded plastid RNA polymerase complex5.39E-04
20GO:0030095: chloroplast photosystem II7.77E-04
21GO:0005759: mitochondrial matrix8.01E-04
22GO:0009534: chloroplast thylakoid1.02E-03
23GO:0005960: glycine cleavage complex1.25E-03
24GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)1.67E-03
25GO:0055035: plastid thylakoid membrane2.13E-03
26GO:0019898: extrinsic component of membrane2.40E-03
27GO:0000793: condensed chromosome2.62E-03
28GO:0010168: ER body2.62E-03
29GO:0009533: chloroplast stromal thylakoid3.72E-03
30GO:0009539: photosystem II reaction center4.93E-03
31GO:0000148: 1,3-beta-D-glucan synthase complex4.93E-03
32GO:0045298: tubulin complex5.59E-03
33GO:0005618: cell wall6.13E-03
34GO:0016324: apical plasma membrane6.99E-03
35GO:0046658: anchored component of plasma membrane7.19E-03
36GO:0031977: thylakoid lumen7.28E-03
37GO:0005874: microtubule1.10E-02
38GO:0005875: microtubule associated complex1.18E-02
39GO:0009505: plant-type cell wall1.41E-02
40GO:0005794: Golgi apparatus2.23E-02
41GO:0005694: chromosome2.52E-02
42GO:0009295: nucleoid2.88E-02
43GO:0005778: peroxisomal membrane2.88E-02
44GO:0005773: vacuole2.93E-02
45GO:0022626: cytosolic ribosome3.66E-02
46GO:0009707: chloroplast outer membrane3.78E-02
47GO:0016020: membrane4.10E-02
48GO:0000325: plant-type vacuole4.19E-02
Gene type



Gene DE type