Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G47590

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation0.00E+00
2GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
3GO:0042821: pyridoxal biosynthetic process0.00E+00
4GO:0005996: monosaccharide metabolic process0.00E+00
5GO:0070272: proton-transporting ATP synthase complex biogenesis0.00E+00
6GO:0080114: positive regulation of glycine hydroxymethyltransferase activity0.00E+00
7GO:0042820: vitamin B6 catabolic process0.00E+00
8GO:0009773: photosynthetic electron transport in photosystem I2.26E-09
9GO:0015979: photosynthesis5.92E-07
10GO:1902326: positive regulation of chlorophyll biosynthetic process2.10E-06
11GO:0030388: fructose 1,6-bisphosphate metabolic process2.10E-06
12GO:0009658: chloroplast organization2.40E-06
13GO:0006000: fructose metabolic process7.70E-06
14GO:0006810: transport1.45E-05
15GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.76E-05
16GO:0006546: glycine catabolic process3.23E-05
17GO:0019464: glycine decarboxylation via glycine cleavage system3.23E-05
18GO:0061077: chaperone-mediated protein folding6.95E-05
19GO:0042026: protein refolding1.06E-04
20GO:1901259: chloroplast rRNA processing1.06E-04
21GO:0016117: carotenoid biosynthetic process1.17E-04
22GO:0009443: pyridoxal 5'-phosphate salvage2.11E-04
23GO:1904966: positive regulation of vitamin E biosynthetic process2.11E-04
24GO:1904964: positive regulation of phytol biosynthetic process2.11E-04
25GO:0033481: galacturonate biosynthetic process2.11E-04
26GO:0032544: plastid translation2.22E-04
27GO:0006002: fructose 6-phosphate metabolic process2.22E-04
28GO:1900865: chloroplast RNA modification3.21E-04
29GO:0018119: peptidyl-cysteine S-nitrosylation4.36E-04
30GO:0018298: protein-chromophore linkage4.62E-04
31GO:0097054: L-glutamate biosynthetic process4.71E-04
32GO:1904143: positive regulation of carotenoid biosynthetic process4.71E-04
33GO:0080183: response to photooxidative stress4.71E-04
34GO:0010275: NAD(P)H dehydrogenase complex assembly4.71E-04
35GO:0006094: gluconeogenesis5.67E-04
36GO:0009767: photosynthetic electron transport chain5.67E-04
37GO:0005986: sucrose biosynthetic process5.67E-04
38GO:0010020: chloroplast fission6.38E-04
39GO:0010207: photosystem II assembly6.38E-04
40GO:0019253: reductive pentose-phosphate cycle6.38E-04
41GO:0006013: mannose metabolic process7.67E-04
42GO:0006518: peptide metabolic process7.67E-04
43GO:0006696: ergosterol biosynthetic process7.67E-04
44GO:0090506: axillary shoot meristem initiation7.67E-04
45GO:0009768: photosynthesis, light harvesting in photosystem I9.63E-04
46GO:0006537: glutamate biosynthetic process1.09E-03
47GO:0006424: glutamyl-tRNA aminoacylation1.09E-03
48GO:0016556: mRNA modification1.09E-03
49GO:0043572: plastid fission1.09E-03
50GO:0051085: chaperone mediated protein folding requiring cofactor1.09E-03
51GO:0071483: cellular response to blue light1.45E-03
52GO:0019676: ammonia assimilation cycle1.45E-03
53GO:0009765: photosynthesis, light harvesting1.45E-03
54GO:0045727: positive regulation of translation1.45E-03
55GO:0009735: response to cytokinin1.65E-03
56GO:0009741: response to brassinosteroid1.71E-03
57GO:0016120: carotene biosynthetic process1.85E-03
58GO:0006656: phosphatidylcholine biosynthetic process1.85E-03
59GO:0032543: mitochondrial translation1.85E-03
60GO:0016123: xanthophyll biosynthetic process1.85E-03
61GO:0010358: leaf shaping2.28E-03
62GO:0016554: cytidine to uridine editing2.28E-03
63GO:0006655: phosphatidylglycerol biosynthetic process2.28E-03
64GO:0032973: amino acid export2.28E-03
65GO:0010190: cytochrome b6f complex assembly2.28E-03
66GO:0010067: procambium histogenesis2.74E-03
67GO:0006458: 'de novo' protein folding2.74E-03
68GO:0009955: adaxial/abaxial pattern specification2.74E-03
69GO:0010196: nonphotochemical quenching3.23E-03
70GO:0050829: defense response to Gram-negative bacterium3.23E-03
71GO:0009645: response to low light intensity stimulus3.23E-03
72GO:0043090: amino acid import3.23E-03
73GO:0006875: cellular metal ion homeostasis3.74E-03
74GO:0048564: photosystem I assembly3.74E-03
75GO:0017004: cytochrome complex assembly4.29E-03
76GO:0071482: cellular response to light stimulus4.29E-03
77GO:0006075: (1->3)-beta-D-glucan biosynthetic process4.29E-03
78GO:0009407: toxin catabolic process4.35E-03
79GO:0080144: amino acid homeostasis4.85E-03
80GO:0000902: cell morphogenesis4.85E-03
81GO:0009853: photorespiration4.99E-03
82GO:0019684: photosynthesis, light reaction6.69E-03
83GO:0055114: oxidation-reduction process6.69E-03
84GO:0043085: positive regulation of catalytic activity6.69E-03
85GO:0006352: DNA-templated transcription, initiation6.69E-03
86GO:0000272: polysaccharide catabolic process6.69E-03
87GO:0009636: response to toxic substance7.22E-03
88GO:0016024: CDP-diacylglycerol biosynthetic process7.36E-03
89GO:0045037: protein import into chloroplast stroma7.36E-03
90GO:0010223: secondary shoot formation8.75E-03
91GO:0005985: sucrose metabolic process9.48E-03
92GO:0090351: seedling development9.48E-03
93GO:0009225: nucleotide-sugar metabolic process9.48E-03
94GO:0006096: glycolytic process1.03E-02
95GO:0045454: cell redox homeostasis1.12E-02
96GO:0009409: response to cold1.13E-02
97GO:0006457: protein folding1.15E-02
98GO:0006418: tRNA aminoacylation for protein translation1.18E-02
99GO:0016226: iron-sulfur cluster assembly1.34E-02
100GO:0007005: mitochondrion organization1.34E-02
101GO:0080092: regulation of pollen tube growth1.34E-02
102GO:0009294: DNA mediated transformation1.43E-02
103GO:0001944: vasculature development1.43E-02
104GO:0010089: xylem development1.52E-02
105GO:0042335: cuticle development1.70E-02
106GO:0010087: phloem or xylem histogenesis1.70E-02
107GO:0042631: cellular response to water deprivation1.70E-02
108GO:0008360: regulation of cell shape1.79E-02
109GO:0006662: glycerol ether metabolic process1.79E-02
110GO:0010268: brassinosteroid homeostasis1.79E-02
111GO:0009646: response to absence of light1.88E-02
112GO:0009791: post-embryonic development1.98E-02
113GO:0019252: starch biosynthetic process1.98E-02
114GO:0008654: phospholipid biosynthetic process1.98E-02
115GO:0016132: brassinosteroid biosynthetic process2.08E-02
116GO:0080156: mitochondrial mRNA modification2.08E-02
117GO:0007623: circadian rhythm2.14E-02
118GO:0032502: developmental process2.18E-02
119GO:0007264: small GTPase mediated signal transduction2.18E-02
120GO:0042742: defense response to bacterium2.25E-02
121GO:0071555: cell wall organization2.25E-02
122GO:0010090: trichome morphogenesis2.28E-02
123GO:0016125: sterol metabolic process2.38E-02
124GO:0071805: potassium ion transmembrane transport2.49E-02
125GO:0010286: heat acclimation2.49E-02
126GO:0010027: thylakoid membrane organization2.70E-02
127GO:0009627: systemic acquired resistance2.92E-02
128GO:0009416: response to light stimulus2.99E-02
129GO:0015995: chlorophyll biosynthetic process3.04E-02
130GO:0009817: defense response to fungus, incompatible interaction3.27E-02
131GO:0048481: plant ovule development3.27E-02
132GO:0008219: cell death3.27E-02
133GO:0000160: phosphorelay signal transduction system3.38E-02
134GO:0010218: response to far red light3.50E-02
135GO:0009867: jasmonic acid mediated signaling pathway3.86E-02
136GO:0016051: carbohydrate biosynthetic process3.86E-02
137GO:0009637: response to blue light3.86E-02
138GO:0034599: cellular response to oxidative stress3.99E-02
139GO:0005975: carbohydrate metabolic process4.15E-02
140GO:0006631: fatty acid metabolic process4.37E-02
141GO:0006412: translation4.48E-02
142GO:0010114: response to red light4.63E-02
143GO:0009744: response to sucrose4.63E-02
144GO:0009644: response to high light intensity4.89E-02
RankGO TermAdjusted P value
1GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity0.00E+00
2GO:0045435: lycopene epsilon cyclase activity0.00E+00
3GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
4GO:0004822: isoleucine-tRNA ligase activity0.00E+00
5GO:0046905: phytoene synthase activity0.00E+00
6GO:0050278: sedoheptulose-bisphosphatase activity0.00E+00
7GO:0051738: xanthophyll binding0.00E+00
8GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
9GO:0009974: zeinoxanthin epsilon hydroxylase activity0.00E+00
10GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity0.00E+00
11GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
12GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity2.10E-06
13GO:0019843: rRNA binding3.36E-06
14GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity1.76E-05
15GO:0004375: glycine dehydrogenase (decarboxylating) activity1.76E-05
16GO:0016168: chlorophyll binding2.40E-05
17GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor3.23E-05
18GO:0004222: metalloendopeptidase activity4.43E-05
19GO:0051920: peroxiredoxin activity1.06E-04
20GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity1.06E-04
21GO:0004033: aldo-keto reductase (NADP) activity1.78E-04
22GO:0016209: antioxidant activity1.78E-04
23GO:0003867: 4-aminobutyrate transaminase activity2.11E-04
24GO:0051996: squalene synthase activity2.11E-04
25GO:0015088: copper uptake transmembrane transporter activity2.11E-04
26GO:0016041: glutamate synthase (ferredoxin) activity2.11E-04
27GO:0010012: steroid 22-alpha hydroxylase activity2.11E-04
28GO:0047259: glucomannan 4-beta-mannosyltransferase activity2.11E-04
29GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity2.11E-04
30GO:0051082: unfolded protein binding2.87E-04
31GO:0044183: protein binding involved in protein folding4.36E-04
32GO:0008967: phosphoglycolate phosphatase activity4.71E-04
33GO:0004310: farnesyl-diphosphate farnesyltransferase activity4.71E-04
34GO:0000234: phosphoethanolamine N-methyltransferase activity4.71E-04
35GO:0010297: heteropolysaccharide binding4.71E-04
36GO:0004047: aminomethyltransferase activity4.71E-04
37GO:0031072: heat shock protein binding5.67E-04
38GO:0002161: aminoacyl-tRNA editing activity7.67E-04
39GO:0004148: dihydrolipoyl dehydrogenase activity7.67E-04
40GO:0070402: NADPH binding7.67E-04
41GO:0070330: aromatase activity7.67E-04
42GO:0031409: pigment binding7.93E-04
43GO:0005528: FK506 binding8.76E-04
44GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.04E-03
45GO:0022891: substrate-specific transmembrane transporter activity1.25E-03
46GO:0043495: protein anchor1.45E-03
47GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.45E-03
48GO:0050378: UDP-glucuronate 4-epimerase activity1.45E-03
49GO:0001053: plastid sigma factor activity1.45E-03
50GO:0016987: sigma factor activity1.45E-03
51GO:0016773: phosphotransferase activity, alcohol group as acceptor1.85E-03
52GO:0018685: alkane 1-monooxygenase activity1.85E-03
53GO:0051538: 3 iron, 4 sulfur cluster binding1.85E-03
54GO:0008374: O-acyltransferase activity1.85E-03
55GO:0048038: quinone binding2.10E-03
56GO:0042578: phosphoric ester hydrolase activity2.28E-03
57GO:0004605: phosphatidate cytidylyltransferase activity2.28E-03
58GO:0080030: methyl indole-3-acetate esterase activity2.28E-03
59GO:0008237: metallopeptidase activity2.70E-03
60GO:0051753: mannan synthase activity2.74E-03
61GO:0004723: calcium-dependent protein serine/threonine phosphatase activity2.74E-03
62GO:0004559: alpha-mannosidase activity2.74E-03
63GO:0019899: enzyme binding3.23E-03
64GO:0043295: glutathione binding3.23E-03
65GO:0008135: translation factor activity, RNA binding4.29E-03
66GO:0003843: 1,3-beta-D-glucan synthase activity4.29E-03
67GO:0005381: iron ion transmembrane transporter activity5.44E-03
68GO:0008047: enzyme activator activity6.06E-03
69GO:0004364: glutathione transferase activity6.17E-03
70GO:0005089: Rho guanyl-nucleotide exchange factor activity6.69E-03
71GO:0047372: acylglycerol lipase activity6.69E-03
72GO:0004601: peroxidase activity6.74E-03
73GO:0000049: tRNA binding7.36E-03
74GO:0003824: catalytic activity7.83E-03
75GO:0004565: beta-galactosidase activity8.04E-03
76GO:0042973: glucan endo-1,3-beta-D-glucosidase activity8.75E-03
77GO:0016491: oxidoreductase activity1.07E-02
78GO:0051536: iron-sulfur cluster binding1.10E-02
79GO:0015079: potassium ion transmembrane transporter activity1.18E-02
80GO:0043424: protein histidine kinase binding1.18E-02
81GO:0046872: metal ion binding1.19E-02
82GO:0004176: ATP-dependent peptidase activity1.26E-02
83GO:0033612: receptor serine/threonine kinase binding1.26E-02
84GO:0003924: GTPase activity1.46E-02
85GO:0005515: protein binding1.52E-02
86GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen1.59E-02
87GO:0047134: protein-disulfide reductase activity1.61E-02
88GO:0004812: aminoacyl-tRNA ligase activity1.61E-02
89GO:0005102: receptor binding1.61E-02
90GO:0004519: endonuclease activity1.62E-02
91GO:0005525: GTP binding1.65E-02
92GO:0050662: coenzyme binding1.88E-02
93GO:0004791: thioredoxin-disulfide reductase activity1.88E-02
94GO:0005509: calcium ion binding2.00E-02
95GO:0003735: structural constituent of ribosome2.18E-02
96GO:0000156: phosphorelay response regulator activity2.28E-02
97GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.28E-02
98GO:0016759: cellulose synthase activity2.38E-02
99GO:0016787: hydrolase activity2.47E-02
100GO:0008483: transaminase activity2.49E-02
101GO:0016722: oxidoreductase activity, oxidizing metal ions2.49E-02
102GO:0042802: identical protein binding2.73E-02
103GO:0003746: translation elongation factor activity3.86E-02
104GO:0030246: carbohydrate binding4.32E-02
105GO:0051537: 2 iron, 2 sulfur cluster binding4.89E-02
RankGO TermAdjusted P value
1GO:0009344: nitrite reductase complex [NAD(P)H]0.00E+00
2GO:0009571: proplastid stroma0.00E+00
3GO:0009507: chloroplast3.39E-53
4GO:0009535: chloroplast thylakoid membrane8.29E-28
5GO:0009570: chloroplast stroma1.94E-23
6GO:0009941: chloroplast envelope5.01E-22
7GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)2.53E-12
8GO:0009543: chloroplast thylakoid lumen2.56E-10
9GO:0009579: thylakoid1.72E-09
10GO:0009534: chloroplast thylakoid2.39E-08
11GO:0009654: photosystem II oxygen evolving complex1.64E-06
12GO:0048046: apoplast4.28E-06
13GO:0005960: glycine cleavage complex1.76E-05
14GO:0030095: chloroplast photosystem II3.01E-05
15GO:0010287: plastoglobule4.19E-05
16GO:0031969: chloroplast membrane5.07E-05
17GO:0042651: thylakoid membrane5.99E-05
18GO:0019898: extrinsic component of membrane1.79E-04
19GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex2.11E-04
20GO:0009782: photosystem I antenna complex2.11E-04
21GO:0010319: stromule2.79E-04
22GO:0009706: chloroplast inner membrane2.87E-04
23GO:0000427: plastid-encoded plastid RNA polymerase complex4.71E-04
24GO:0045254: pyruvate dehydrogenase complex4.71E-04
25GO:0015934: large ribosomal subunit5.55E-04
26GO:0030076: light-harvesting complex7.14E-04
27GO:0031977: thylakoid lumen7.75E-04
28GO:0009536: plastid8.10E-04
29GO:0016021: integral component of membrane1.04E-03
30GO:0009517: PSII associated light-harvesting complex II1.45E-03
31GO:0031897: Tic complex1.45E-03
32GO:0009523: photosystem II1.97E-03
33GO:0005840: ribosome2.06E-03
34GO:0009533: chloroplast stromal thylakoid3.23E-03
35GO:0000148: 1,3-beta-D-glucan synthase complex4.29E-03
36GO:0009539: photosystem II reaction center4.29E-03
37GO:0005763: mitochondrial small ribosomal subunit4.85E-03
38GO:0016324: apical plasma membrane6.06E-03
39GO:0022626: cytosolic ribosome7.30E-03
40GO:0000311: plastid large ribosomal subunit7.36E-03
41GO:0009505: plant-type cell wall9.86E-03
42GO:0016020: membrane1.11E-02
43GO:0009532: plastid stroma1.26E-02
44GO:0009522: photosystem I1.88E-02
45GO:0005759: mitochondrial matrix1.95E-02
46GO:0032580: Golgi cisterna membrane2.38E-02
47GO:0005778: peroxisomal membrane2.49E-02
48GO:0046658: anchored component of plasma membrane2.84E-02
49GO:0005819: spindle4.11E-02
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Gene type



Gene DE type