gene detail

Gene description

TAIR ID: AT2G28000

Short description: chaperonin-60alpha

Pathogen responsiveness: -0.27

General responsiveness: -0.11

Orthologous

Rice:

OS12G0277500

Maize:

AC215201.3_FGT005

Wheat:

TA.1353.1.S1_AT

GO biological process

chaperone-mediated protein folding, protein folding, mitochondrion organization, 'de novo' protein folding, chloroplast organization, embryo development, protein refolding

GO cellular component

chloroplast stroma, mitochondrion, apoplast, chloroplast envelope, cytosolic ribosome, thylakoid, membrane, chloroplast

GO molecular function

ATP binding, unfolded protein binding, protein binding involved in protein folding

Protein domain

Pfam	PF00118, TCP-1/cpn60 chaperonin family

Metabolic pathway

PWY-2724: alkane oxidation
PWY-2501: fatty acid α-oxidation I
PWY66-21: ethanol degradation II

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT1G66600

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 5

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

17 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-1.69	1.64E-04
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.95	2.91E-05
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.85	6.86E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-4.20	1.01E-09
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	-1.80	1.83E-04
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a C216aA 6 h	-1.56	2.47E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-2.62	2.01E-15
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	-1.57	8.04E-12
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-2.06	5.98E-14
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.61	1.30E-12
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-1.96	1.15E-08
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-1.69	9.46E-07
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.86	7.77E-08
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-2.02	5.72E-09
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.80	1.61E-06
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	-1.69	2.37E-04
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 90-105 min	1.91	4.31E-02