Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G28000

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0080094: response to trehalose-6-phosphate0.00E+00
2GO:0035998: 7,8-dihydroneopterin 3'-triphosphate biosynthetic process0.00E+00
3GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
4GO:0051290: protein heterotetramerization0.00E+00
5GO:1901671: positive regulation of superoxide dismutase activity0.00E+00
6GO:0051085: chaperone mediated protein folding requiring cofactor4.78E-07
7GO:0042026: protein refolding3.68E-06
8GO:0006169: adenosine salvage2.64E-05
9GO:0010480: microsporocyte differentiation2.64E-05
10GO:0019510: S-adenosylhomocysteine catabolic process2.64E-05
11GO:0010069: zygote asymmetric cytokinesis in embryo sac6.72E-05
12GO:1903338: regulation of cell wall organization or biogenesis6.72E-05
13GO:0033353: S-adenosylmethionine cycle6.72E-05
14GO:0080183: response to photooxidative stress6.72E-05
15GO:0071258: cellular response to gravity6.72E-05
16GO:0006729: tetrahydrobiopterin biosynthetic process6.72E-05
17GO:0010424: DNA methylation on cytosine within a CG sequence6.72E-05
18GO:0043039: tRNA aminoacylation6.72E-05
19GO:0007005: mitochondrion organization6.90E-05
20GO:0009052: pentose-phosphate shunt, non-oxidative branch1.76E-04
21GO:0006986: response to unfolded protein1.76E-04
22GO:0006542: glutamine biosynthetic process2.39E-04
23GO:0019676: ammonia assimilation cycle2.39E-04
24GO:0009765: photosynthesis, light harvesting2.39E-04
25GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.78E-04
26GO:0044209: AMP salvage3.07E-04
27GO:0006458: 'de novo' protein folding4.53E-04
28GO:0046654: tetrahydrofolate biosynthetic process4.53E-04
29GO:0048437: floral organ development5.30E-04
30GO:0006826: iron ion transport5.30E-04
31GO:0006880: intracellular sequestering of iron ion5.30E-04
32GO:0006955: immune response5.30E-04
33GO:0052543: callose deposition in cell wall6.10E-04
34GO:0048564: photosystem I assembly6.10E-04
35GO:0046686: response to cadmium ion6.47E-04
36GO:0006526: arginine biosynthetic process6.94E-04
37GO:0009821: alkaloid biosynthetic process7.80E-04
38GO:0006754: ATP biosynthetic process7.80E-04
39GO:0048589: developmental growth7.80E-04
40GO:0009735: response to cytokinin8.09E-04
41GO:0006349: regulation of gene expression by genetic imprinting8.68E-04
42GO:0010192: mucilage biosynthetic process9.59E-04
43GO:0006879: cellular iron ion homeostasis1.05E-03
44GO:0048229: gametophyte development1.05E-03
45GO:0010216: maintenance of DNA methylation1.05E-03
46GO:0009058: biosynthetic process1.07E-03
47GO:0010075: regulation of meristem growth1.25E-03
48GO:0010020: chloroplast fission1.35E-03
49GO:0019253: reductive pentose-phosphate cycle1.35E-03
50GO:0009934: regulation of meristem structural organization1.35E-03
51GO:0010039: response to iron ion1.45E-03
52GO:0009833: plant-type primary cell wall biogenesis1.56E-03
53GO:0007010: cytoskeleton organization1.67E-03
54GO:0006418: tRNA aminoacylation for protein translation1.78E-03
55GO:0007017: microtubule-based process1.78E-03
56GO:0009768: photosynthesis, light harvesting in photosystem I1.78E-03
57GO:0016998: cell wall macromolecule catabolic process1.90E-03
58GO:0061077: chaperone-mediated protein folding1.90E-03
59GO:0006730: one-carbon metabolic process2.02E-03
60GO:0009294: DNA mediated transformation2.14E-03
61GO:0048653: anther development2.52E-03
62GO:0055072: iron ion homeostasis2.91E-03
63GO:0015979: photosynthesis2.96E-03
64GO:0000302: response to reactive oxygen species3.05E-03
65GO:0010583: response to cyclopentenone3.19E-03
66GO:0016032: viral process3.19E-03
67GO:0010286: heat acclimation3.62E-03
68GO:0009607: response to biotic stimulus4.06E-03
69GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.06E-03
70GO:0009627: systemic acquired resistance4.22E-03
71GO:0016049: cell growth4.53E-03
72GO:0030244: cellulose biosynthetic process4.69E-03
73GO:0018298: protein-chromophore linkage4.69E-03
74GO:0008219: cell death4.69E-03
75GO:0009832: plant-type cell wall biogenesis4.85E-03
76GO:0048767: root hair elongation4.85E-03
77GO:0009407: toxin catabolic process5.02E-03
78GO:0010218: response to far red light5.02E-03
79GO:0007568: aging5.18E-03
80GO:0009910: negative regulation of flower development5.18E-03
81GO:0009637: response to blue light5.52E-03
82GO:0010114: response to red light6.57E-03
83GO:0009636: response to toxic substance7.12E-03
84GO:0042538: hyperosmotic salinity response7.69E-03
85GO:0016569: covalent chromatin modification9.92E-03
86GO:0042545: cell wall modification1.01E-02
87GO:0009790: embryo development1.35E-02
88GO:0006633: fatty acid biosynthetic process1.42E-02
89GO:0045490: pectin catabolic process1.52E-02
90GO:0009409: response to cold1.86E-02
91GO:0006952: defense response1.90E-02
92GO:0009658: chloroplast organization2.07E-02
93GO:0005975: carbohydrate metabolic process2.08E-02
94GO:0048366: leaf development2.33E-02
95GO:0006468: protein phosphorylation2.88E-02
96GO:0008152: metabolic process3.42E-02
97GO:0009908: flower development4.47E-02
RankGO TermAdjusted P value
1GO:0003934: GTP cyclohydrolase I activity0.00E+00
2GO:0004358: glutamate N-acetyltransferase activity0.00E+00
3GO:0044183: protein binding involved in protein folding2.07E-05
4GO:0042834: peptidoglycan binding2.64E-05
5GO:0004831: tyrosine-tRNA ligase activity2.64E-05
6GO:0004001: adenosine kinase activity2.64E-05
7GO:0004013: adenosylhomocysteinase activity2.64E-05
8GO:0051082: unfolded protein binding4.73E-05
9GO:0004312: fatty acid synthase activity6.72E-05
10GO:0004751: ribose-5-phosphate isomerase activity1.18E-04
11GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.18E-04
12GO:0008199: ferric iron binding1.76E-04
13GO:0001872: (1->3)-beta-D-glucan binding1.76E-04
14GO:0004322: ferroxidase activity1.76E-04
15GO:0005200: structural constituent of cytoskeleton1.81E-04
16GO:0005524: ATP binding1.93E-04
17GO:0004356: glutamate-ammonia ligase activity3.07E-04
18GO:0003886: DNA (cytosine-5-)-methyltransferase activity4.53E-04
19GO:0043295: glutathione binding5.30E-04
20GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism7.80E-04
21GO:0016844: strictosidine synthase activity8.68E-04
22GO:0004565: beta-galactosidase activity1.25E-03
23GO:0031409: pigment binding1.56E-03
24GO:0051087: chaperone binding1.78E-03
25GO:0033612: receptor serine/threonine kinase binding1.90E-03
26GO:0016760: cellulose synthase (UDP-forming) activity2.14E-03
27GO:0004812: aminoacyl-tRNA ligase activity2.39E-03
28GO:0016759: cellulose synthase activity3.47E-03
29GO:0016168: chlorophyll binding4.06E-03
30GO:0030247: polysaccharide binding4.37E-03
31GO:0004364: glutathione transferase activity6.39E-03
32GO:0043621: protein self-association6.94E-03
33GO:0051287: NAD binding7.50E-03
34GO:0045330: aspartyl esterase activity8.68E-03
35GO:0003777: microtubule motor activity8.68E-03
36GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds8.89E-03
37GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups9.29E-03
38GO:0005507: copper ion binding9.60E-03
39GO:0030599: pectinesterase activity9.92E-03
40GO:0005516: calmodulin binding1.01E-02
41GO:0008017: microtubule binding1.57E-02
42GO:0004674: protein serine/threonine kinase activity1.63E-02
43GO:0004672: protein kinase activity2.01E-02
44GO:0008168: methyltransferase activity2.02E-02
45GO:0016788: hydrolase activity, acting on ester bonds2.10E-02
46GO:0003682: chromatin binding2.16E-02
47GO:0005515: protein binding2.83E-02
48GO:0016887: ATPase activity4.36E-02
RankGO TermAdjusted P value
1GO:0009570: chloroplast stroma2.55E-08
2GO:0009579: thylakoid4.14E-07
3GO:0009941: chloroplast envelope1.36E-06
4GO:0022626: cytosolic ribosome9.16E-05
5GO:0009507: chloroplast1.06E-04
6GO:0005886: plasma membrane1.43E-04
7GO:0009535: chloroplast thylakoid membrane1.85E-04
8GO:0010168: ER body3.78E-04
9GO:0048046: apoplast4.61E-04
10GO:0016020: membrane6.06E-04
11GO:0045298: tubulin complex7.80E-04
12GO:0005829: cytosol7.85E-04
13GO:0030076: light-harvesting complex1.45E-03
14GO:0031225: anchored component of membrane1.56E-03
15GO:0046658: anchored component of plasma membrane1.81E-03
16GO:0009522: photosystem I2.78E-03
17GO:0009505: plant-type cell wall2.88E-03
18GO:0009523: photosystem II2.91E-03
19GO:0010319: stromule3.62E-03
20GO:0000325: plant-type vacuole5.18E-03
21GO:0005856: cytoskeleton7.12E-03
22GO:0010287: plastoglobule1.17E-02
23GO:0005618: cell wall1.24E-02
24GO:0005759: mitochondrial matrix1.42E-02
25GO:0009506: plasmodesma1.63E-02
26GO:0009536: plastid1.68E-02
27GO:0005773: vacuole1.80E-02
28GO:0005874: microtubule2.36E-02
29GO:0005774: vacuolar membrane4.73E-02
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Gene type



Gene DE type