Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G28000

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006399: tRNA metabolic process0.00E+00
2GO:0046040: IMP metabolic process0.00E+00
3GO:0070125: mitochondrial translational elongation0.00E+00
4GO:0006429: leucyl-tRNA aminoacylation0.00E+00
5GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
6GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
7GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
8GO:0046460: neutral lipid biosynthetic process0.00E+00
9GO:0090071: negative regulation of ribosome biogenesis0.00E+00
10GO:0006167: AMP biosynthetic process0.00E+00
11GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
12GO:0042407: cristae formation0.00E+00
13GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
14GO:0090042: tubulin deacetylation0.00E+00
15GO:0051050: positive regulation of transport0.00E+00
16GO:0009793: embryo development ending in seed dormancy2.80E-06
17GO:0009658: chloroplast organization6.00E-06
18GO:0006353: DNA-templated transcription, termination1.69E-05
19GO:0009657: plastid organization2.41E-05
20GO:0042793: transcription from plastid promoter2.19E-04
21GO:0006730: one-carbon metabolic process3.10E-04
22GO:0042371: vitamin K biosynthetic process4.07E-04
23GO:2000021: regulation of ion homeostasis4.07E-04
24GO:0006436: tryptophanyl-tRNA aminoacylation4.07E-04
25GO:1902458: positive regulation of stomatal opening4.07E-04
26GO:0000023: maltose metabolic process4.07E-04
27GO:0006419: alanyl-tRNA aminoacylation4.07E-04
28GO:0000476: maturation of 4.5S rRNA4.07E-04
29GO:0000967: rRNA 5'-end processing4.07E-04
30GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process4.07E-04
31GO:0070509: calcium ion import4.07E-04
32GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process4.07E-04
33GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic4.07E-04
34GO:0005980: glycogen catabolic process4.07E-04
35GO:0043266: regulation of potassium ion transport4.07E-04
36GO:0042547: cell wall modification involved in multidimensional cell growth4.07E-04
37GO:0000105: histidine biosynthetic process4.76E-04
38GO:0032544: plastid translation5.80E-04
39GO:0009451: RNA modification6.47E-04
40GO:0042550: photosystem I stabilization8.83E-04
41GO:0001682: tRNA 5'-leader removal8.83E-04
42GO:1903426: regulation of reactive oxygen species biosynthetic process8.83E-04
43GO:0034470: ncRNA processing8.83E-04
44GO:0009629: response to gravity8.83E-04
45GO:0060359: response to ammonium ion8.83E-04
46GO:0048255: mRNA stabilization8.83E-04
47GO:0007154: cell communication8.83E-04
48GO:0042325: regulation of phosphorylation8.83E-04
49GO:0006423: cysteinyl-tRNA aminoacylation8.83E-04
50GO:0044208: 'de novo' AMP biosynthetic process8.83E-04
51GO:0009220: pyrimidine ribonucleotide biosynthetic process8.83E-04
52GO:0010027: thylakoid membrane organization1.10E-03
53GO:0005983: starch catabolic process1.25E-03
54GO:0045037: protein import into chloroplast stroma1.25E-03
55GO:0043157: response to cation stress1.43E-03
56GO:0005977: glycogen metabolic process1.43E-03
57GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.43E-03
58GO:0042780: tRNA 3'-end processing1.43E-03
59GO:0010207: photosystem II assembly1.61E-03
60GO:0016556: mRNA modification2.07E-03
61GO:2001141: regulation of RNA biosynthetic process2.07E-03
62GO:0051085: chaperone mediated protein folding requiring cofactor2.07E-03
63GO:0009152: purine ribonucleotide biosynthetic process2.07E-03
64GO:0010239: chloroplast mRNA processing2.07E-03
65GO:0010306: rhamnogalacturonan II biosynthetic process2.07E-03
66GO:0006164: purine nucleotide biosynthetic process2.07E-03
67GO:0009790: embryo development2.26E-03
68GO:0006418: tRNA aminoacylation for protein translation2.46E-03
69GO:0010021: amylopectin biosynthetic process2.78E-03
70GO:0051781: positive regulation of cell division2.78E-03
71GO:0006021: inositol biosynthetic process2.78E-03
72GO:0044205: 'de novo' UMP biosynthetic process2.78E-03
73GO:0009409: response to cold3.00E-03
74GO:0016123: xanthophyll biosynthetic process3.56E-03
75GO:0032543: mitochondrial translation3.56E-03
76GO:0010236: plastoquinone biosynthetic process3.56E-03
77GO:0045038: protein import into chloroplast thylakoid membrane3.56E-03
78GO:0008033: tRNA processing4.11E-03
79GO:0009959: negative gravitropism4.41E-03
80GO:0006655: phosphatidylglycerol biosynthetic process4.41E-03
81GO:0016554: cytidine to uridine editing4.41E-03
82GO:0006086: acetyl-CoA biosynthetic process from pyruvate4.41E-03
83GO:0032973: amino acid export4.41E-03
84GO:0050665: hydrogen peroxide biosynthetic process4.41E-03
85GO:0009228: thiamine biosynthetic process4.41E-03
86GO:0048868: pollen tube development4.43E-03
87GO:0019252: starch biosynthetic process5.11E-03
88GO:0009854: oxidative photosynthetic carbon pathway5.31E-03
89GO:0042372: phylloquinone biosynthetic process5.31E-03
90GO:0017148: negative regulation of translation5.31E-03
91GO:0009942: longitudinal axis specification5.31E-03
92GO:0042026: protein refolding5.31E-03
93GO:0034389: lipid particle organization5.31E-03
94GO:0030488: tRNA methylation5.31E-03
95GO:1901259: chloroplast rRNA processing5.31E-03
96GO:0009630: gravitropism5.85E-03
97GO:0010583: response to cyclopentenone5.85E-03
98GO:0006207: 'de novo' pyrimidine nucleobase biosynthetic process6.28E-03
99GO:0015693: magnesium ion transport6.28E-03
100GO:0048528: post-embryonic root development6.28E-03
101GO:0009772: photosynthetic electron transport in photosystem II6.28E-03
102GO:0043090: amino acid import6.28E-03
103GO:0010444: guard mother cell differentiation6.28E-03
104GO:0006400: tRNA modification6.28E-03
105GO:0009828: plant-type cell wall loosening6.64E-03
106GO:0010252: auxin homeostasis6.64E-03
107GO:0070413: trehalose metabolism in response to stress7.30E-03
108GO:0031540: regulation of anthocyanin biosynthetic process7.30E-03
109GO:0009231: riboflavin biosynthetic process7.30E-03
110GO:0048564: photosystem I assembly7.30E-03
111GO:0019375: galactolipid biosynthetic process7.30E-03
112GO:0042255: ribosome assembly7.30E-03
113GO:2000070: regulation of response to water deprivation7.30E-03
114GO:0009932: cell tip growth8.38E-03
115GO:0071482: cellular response to light stimulus8.38E-03
116GO:0006526: arginine biosynthetic process8.38E-03
117GO:0010204: defense response signaling pathway, resistance gene-independent8.38E-03
118GO:0007389: pattern specification process8.38E-03
119GO:0010411: xyloglucan metabolic process9.35E-03
120GO:0015995: chlorophyll biosynthetic process9.35E-03
121GO:0000373: Group II intron splicing9.51E-03
122GO:0080144: amino acid homeostasis9.51E-03
123GO:0006098: pentose-phosphate shunt9.51E-03
124GO:0019432: triglyceride biosynthetic process9.51E-03
125GO:0005975: carbohydrate metabolic process1.07E-02
126GO:0043067: regulation of programmed cell death1.07E-02
127GO:0006779: porphyrin-containing compound biosynthetic process1.07E-02
128GO:0009098: leucine biosynthetic process1.07E-02
129GO:1900865: chloroplast RNA modification1.07E-02
130GO:0031425: chloroplast RNA processing1.07E-02
131GO:0045036: protein targeting to chloroplast1.19E-02
132GO:0006949: syncytium formation1.19E-02
133GO:0006259: DNA metabolic process1.19E-02
134GO:0006535: cysteine biosynthetic process from serine1.19E-02
135GO:0006782: protoporphyrinogen IX biosynthetic process1.19E-02
136GO:0018119: peptidyl-cysteine S-nitrosylation1.32E-02
137GO:0006415: translational termination1.32E-02
138GO:0009684: indoleacetic acid biosynthetic process1.32E-02
139GO:0010015: root morphogenesis1.32E-02
140GO:0006265: DNA topological change1.32E-02
141GO:0045087: innate immune response1.32E-02
142GO:0009073: aromatic amino acid family biosynthetic process1.32E-02
143GO:0006352: DNA-templated transcription, initiation1.32E-02
144GO:0006790: sulfur compound metabolic process1.46E-02
145GO:0016024: CDP-diacylglycerol biosynthetic process1.46E-02
146GO:0010229: inflorescence development1.59E-02
147GO:0050826: response to freezing1.59E-02
148GO:0006094: gluconeogenesis1.59E-02
149GO:2000012: regulation of auxin polar transport1.59E-02
150GO:0006108: malate metabolic process1.59E-02
151GO:0010114: response to red light1.70E-02
152GO:0048467: gynoecium development1.74E-02
153GO:0010020: chloroplast fission1.74E-02
154GO:0042546: cell wall biogenesis1.77E-02
155GO:0090351: seedling development1.88E-02
156GO:0070588: calcium ion transmembrane transport1.88E-02
157GO:0046854: phosphatidylinositol phosphorylation1.88E-02
158GO:0071732: cellular response to nitric oxide1.88E-02
159GO:0006071: glycerol metabolic process2.04E-02
160GO:0042023: DNA endoreduplication2.04E-02
161GO:0009664: plant-type cell wall organization2.14E-02
162GO:0005992: trehalose biosynthetic process2.19E-02
163GO:0019344: cysteine biosynthetic process2.19E-02
164GO:0009116: nucleoside metabolic process2.19E-02
165GO:0019953: sexual reproduction2.35E-02
166GO:0016575: histone deacetylation2.35E-02
167GO:0016998: cell wall macromolecule catabolic process2.51E-02
168GO:0015992: proton transport2.51E-02
169GO:0031408: oxylipin biosynthetic process2.51E-02
170GO:0007005: mitochondrion organization2.68E-02
171GO:0031348: negative regulation of defense response2.68E-02
172GO:0009814: defense response, incompatible interaction2.68E-02
173GO:0016226: iron-sulfur cluster assembly2.68E-02
174GO:0006096: glycolytic process2.72E-02
175GO:0071369: cellular response to ethylene stimulus2.85E-02
176GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.85E-02
177GO:0046686: response to cadmium ion2.94E-02
178GO:0080167: response to karrikin3.02E-02
179GO:0009306: protein secretion3.03E-02
180GO:0016117: carotenoid biosynthetic process3.21E-02
181GO:0009789: positive regulation of abscisic acid-activated signaling pathway3.21E-02
182GO:0006606: protein import into nucleus3.39E-02
183GO:0015979: photosynthesis3.56E-02
184GO:0010197: polar nucleus fusion3.58E-02
185GO:0006662: glycerol ether metabolic process3.58E-02
186GO:0007059: chromosome segregation3.77E-02
187GO:0008654: phospholipid biosynthetic process3.96E-02
188GO:0009851: auxin biosynthetic process3.96E-02
189GO:0000302: response to reactive oxygen species4.15E-02
190GO:0032502: developmental process4.35E-02
191GO:0016032: viral process4.35E-02
192GO:0006508: proteolysis4.55E-02
193GO:1901657: glycosyl compound metabolic process4.55E-02
194GO:0071281: cellular response to iron ion4.55E-02
195GO:0071805: potassium ion transmembrane transport4.97E-02
RankGO TermAdjusted P value
1GO:0004636: phosphoribosyl-ATP diphosphatase activity0.00E+00
2GO:0015267: channel activity0.00E+00
3GO:0004358: glutamate N-acetyltransferase activity0.00E+00
4GO:0052834: inositol monophosphate phosphatase activity0.00E+00
5GO:0004019: adenylosuccinate synthase activity0.00E+00
6GO:0003937: IMP cyclohydrolase activity0.00E+00
7GO:0043864: indoleacetamide hydrolase activity0.00E+00
8GO:0005363: maltose transmembrane transporter activity0.00E+00
9GO:0004588: orotate phosphoribosyltransferase activity0.00E+00
10GO:0004590: orotidine-5'-phosphate decarboxylase activity0.00E+00
11GO:0010303: limit dextrinase activity0.00E+00
12GO:0004635: phosphoribosyl-AMP cyclohydrolase activity0.00E+00
13GO:0004643: phosphoribosylaminoimidazolecarboxamide formyltransferase activity0.00E+00
14GO:0043014: alpha-tubulin binding0.00E+00
15GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
16GO:0051721: protein phosphatase 2A binding0.00E+00
17GO:0004823: leucine-tRNA ligase activity0.00E+00
18GO:0042903: tubulin deacetylase activity0.00E+00
19GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
20GO:0051060: pullulanase activity0.00E+00
21GO:0004401: histidinol-phosphatase activity0.00E+00
22GO:0004056: argininosuccinate lyase activity0.00E+00
23GO:0004326: tetrahydrofolylpolyglutamate synthase activity7.41E-06
24GO:0003723: RNA binding1.46E-05
25GO:0004176: ATP-dependent peptidase activity1.58E-05
26GO:0008237: metallopeptidase activity1.07E-04
27GO:0004556: alpha-amylase activity2.19E-04
28GO:0004519: endonuclease activity3.07E-04
29GO:0010347: L-galactose-1-phosphate phosphatase activity4.07E-04
30GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity4.07E-04
31GO:0046480: galactolipid galactosyltransferase activity4.07E-04
32GO:0005227: calcium activated cation channel activity4.07E-04
33GO:0008184: glycogen phosphorylase activity4.07E-04
34GO:0004645: phosphorylase activity4.07E-04
35GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity4.07E-04
36GO:0004813: alanine-tRNA ligase activity4.07E-04
37GO:0008835: diaminohydroxyphosphoribosylaminopyrimidine deaminase activity4.07E-04
38GO:0046481: digalactosyldiacylglycerol synthase activity4.07E-04
39GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity4.07E-04
40GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.07E-04
41GO:0004830: tryptophan-tRNA ligase activity4.07E-04
42GO:0010291: carotene beta-ring hydroxylase activity8.83E-04
43GO:0003852: 2-isopropylmalate synthase activity8.83E-04
44GO:0009977: proton motive force dependent protein transmembrane transporter activity8.83E-04
45GO:0004047: aminomethyltransferase activity8.83E-04
46GO:0052832: inositol monophosphate 3-phosphatase activity8.83E-04
47GO:0004817: cysteine-tRNA ligase activity8.83E-04
48GO:0019156: isoamylase activity8.83E-04
49GO:0008934: inositol monophosphate 1-phosphatase activity8.83E-04
50GO:0052833: inositol monophosphate 4-phosphatase activity8.83E-04
51GO:0044183: protein binding involved in protein folding1.10E-03
52GO:0046524: sucrose-phosphate synthase activity1.43E-03
53GO:0070330: aromatase activity1.43E-03
54GO:0003913: DNA photolyase activity1.43E-03
55GO:0002161: aminoacyl-tRNA editing activity1.43E-03
56GO:0042781: 3'-tRNA processing endoribonuclease activity1.43E-03
57GO:0004222: metalloendopeptidase activity1.74E-03
58GO:0019843: rRNA binding1.78E-03
59GO:0016851: magnesium chelatase activity2.07E-03
60GO:0043023: ribosomal large subunit binding2.07E-03
61GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity2.07E-03
62GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity2.07E-03
63GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity2.07E-03
64GO:0019201: nucleotide kinase activity2.07E-03
65GO:0009678: hydrogen-translocating pyrophosphatase activity2.07E-03
66GO:0035250: UDP-galactosyltransferase activity2.07E-03
67GO:0048487: beta-tubulin binding2.07E-03
68GO:0016149: translation release factor activity, codon specific2.07E-03
69GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity2.07E-03
70GO:0016656: monodehydroascorbate reductase (NADH) activity2.07E-03
71GO:0003746: translation elongation factor activity2.08E-03
72GO:0005528: FK506 binding2.22E-03
73GO:0004659: prenyltransferase activity2.78E-03
74GO:0001053: plastid sigma factor activity2.78E-03
75GO:0005525: GTP binding2.78E-03
76GO:0004045: aminoacyl-tRNA hydrolase activity2.78E-03
77GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.78E-03
78GO:0016987: sigma factor activity2.78E-03
79GO:0008891: glycolate oxidase activity2.78E-03
80GO:0043621: protein self-association3.18E-03
81GO:0045300: acyl-[acyl-carrier-protein] desaturase activity3.56E-03
82GO:0005275: amine transmembrane transporter activity3.56E-03
83GO:0018685: alkane 1-monooxygenase activity3.56E-03
84GO:0016773: phosphotransferase activity, alcohol group as acceptor3.56E-03
85GO:0004040: amidase activity3.56E-03
86GO:0004812: aminoacyl-tRNA ligase activity3.80E-03
87GO:0004605: phosphatidate cytidylyltransferase activity4.41E-03
88GO:0004332: fructose-bisphosphate aldolase activity4.41E-03
89GO:0004526: ribonuclease P activity4.41E-03
90GO:0004124: cysteine synthase activity5.31E-03
91GO:0008195: phosphatidate phosphatase activity5.31E-03
92GO:0004017: adenylate kinase activity5.31E-03
93GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity5.31E-03
94GO:0004144: diacylglycerol O-acyltransferase activity5.31E-03
95GO:0030060: L-malate dehydrogenase activity5.31E-03
96GO:0016762: xyloglucan:xyloglucosyl transferase activity5.47E-03
97GO:0004427: inorganic diphosphatase activity6.28E-03
98GO:0009881: photoreceptor activity6.28E-03
99GO:0016597: amino acid binding7.48E-03
100GO:0016887: ATPase activity8.37E-03
101GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)8.38E-03
102GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity8.38E-03
103GO:0016798: hydrolase activity, acting on glycosyl bonds9.35E-03
104GO:0003747: translation release factor activity9.51E-03
105GO:0016829: lyase activity9.73E-03
106GO:0009672: auxin:proton symporter activity1.07E-02
107GO:0004805: trehalose-phosphatase activity1.19E-02
108GO:0016614: oxidoreductase activity, acting on CH-OH group of donors1.20E-02
109GO:0003993: acid phosphatase activity1.38E-02
110GO:0000049: tRNA binding1.46E-02
111GO:0004089: carbonate dehydratase activity1.59E-02
112GO:0015095: magnesium ion transmembrane transporter activity1.59E-02
113GO:0005262: calcium channel activity1.59E-02
114GO:0019888: protein phosphatase regulator activity1.59E-02
115GO:0009982: pseudouridine synthase activity1.59E-02
116GO:0004565: beta-galactosidase activity1.59E-02
117GO:0010329: auxin efflux transmembrane transporter activity1.59E-02
118GO:0008266: poly(U) RNA binding1.74E-02
119GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.99E-02
120GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.04E-02
121GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.04E-02
122GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.04E-02
123GO:0051536: iron-sulfur cluster binding2.19E-02
124GO:0004407: histone deacetylase activity2.19E-02
125GO:0015079: potassium ion transmembrane transporter activity2.35E-02
126GO:0003690: double-stranded DNA binding2.38E-02
127GO:0008408: 3'-5' exonuclease activity2.51E-02
128GO:0015171: amino acid transmembrane transporter activity2.55E-02
129GO:0050660: flavin adenine dinucleotide binding2.77E-02
130GO:0030570: pectate lyase activity2.85E-02
131GO:0003727: single-stranded RNA binding3.03E-02
132GO:0047134: protein-disulfide reductase activity3.21E-02
133GO:0004527: exonuclease activity3.58E-02
134GO:0008536: Ran GTPase binding3.58E-02
135GO:0004791: thioredoxin-disulfide reductase activity3.77E-02
136GO:0010181: FMN binding3.77E-02
137GO:0030170: pyridoxal phosphate binding4.53E-02
138GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor4.55E-02
139GO:0000156: phosphorelay response regulator activity4.55E-02
140GO:0016791: phosphatase activity4.76E-02
141GO:0008565: protein transporter activity4.88E-02
142GO:0003924: GTPase activity4.88E-02
143GO:0008483: transaminase activity4.97E-02
144GO:0016722: oxidoreductase activity, oxidizing metal ions4.97E-02
145GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.97E-02
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Gene type



Gene DE type