co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G28000

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0042407: cristae formation	0.00E+00
2	GO:0051290: protein heterotetramerization	0.00E+00
3	GO:1901671: positive regulation of superoxide dismutase activity	0.00E+00
4	GO:0016048: detection of temperature stimulus	0.00E+00
5	GO:0031508: pericentric heterochromatin assembly	0.00E+00
6	GO:0080094: response to trehalose-6-phosphate	0.00E+00
7	GO:0010424: DNA methylation on cytosine within a CG sequence	2.37E-07
8	GO:0051085: chaperone mediated protein folding requiring cofactor	2.19E-06
9	GO:0006342: chromatin silencing	1.18E-05
10	GO:0042026: protein refolding	1.57E-05
11	GO:0044030: regulation of DNA methylation	3.64E-05
12	GO:0045004: DNA replication proofreading	6.42E-05
13	GO:0006169: adenosine salvage	6.42E-05
14	GO:0006287: base-excision repair, gap-filling	6.42E-05
15	GO:0010216: maintenance of DNA methylation	7.90E-05
16	GO:0010020: chloroplast fission	1.23E-04
17	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.48E-04
18	GO:0010069: zygote asymmetric cytokinesis in embryo sac	1.55E-04
19	GO:0006297: nucleotide-excision repair, DNA gap filling	1.55E-04
20	GO:0090309: positive regulation of methylation-dependent chromatin silencing	1.55E-04
21	GO:0015712: hexose phosphate transport	1.55E-04
22	GO:0006423: cysteinyl-tRNA aminoacylation	1.55E-04
23	GO:0006272: leading strand elongation	1.55E-04
24	GO:0045717: negative regulation of fatty acid biosynthetic process	1.55E-04
25	GO:0009662: etioplast organization	1.55E-04
26	GO:0071158: positive regulation of cell cycle arrest	1.55E-04
27	GO:0010086: embryonic root morphogenesis	1.55E-04
28	GO:0007005: mitochondrion organization	2.37E-04
29	GO:0035066: positive regulation of histone acetylation	2.63E-04
30	GO:0070828: heterochromatin organization	2.63E-04
31	GO:0035436: triose phosphate transmembrane transport	2.63E-04
32	GO:0032776: DNA methylation on cytosine	2.63E-04
33	GO:0035067: negative regulation of histone acetylation	3.82E-04
34	GO:0043572: plastid fission	3.82E-04
35	GO:0006986: response to unfolded protein	3.82E-04
36	GO:0015713: phosphoglycerate transport	5.10E-04
37	GO:0009902: chloroplast relocation	5.10E-04
38	GO:0009694: jasmonic acid metabolic process	5.10E-04
39	GO:0000278: mitotic cell cycle	6.45E-04
40	GO:0044209: AMP salvage	6.45E-04
41	GO:0051301: cell division	7.48E-04
42	GO:0042793: transcription from plastid promoter	7.90E-04
43	GO:0048579: negative regulation of long-day photoperiodism, flowering	7.90E-04
44	GO:0070814: hydrogen sulfide biosynthetic process	7.90E-04
45	GO:0009094: L-phenylalanine biosynthetic process	9.40E-04
46	GO:0006458: 'de novo' protein folding	9.40E-04
47	GO:0007049: cell cycle	9.94E-04
48	GO:0006826: iron ion transport	1.10E-03
49	GO:0006880: intracellular sequestering of iron ion	1.10E-03
50	GO:0000105: histidine biosynthetic process	1.26E-03
51	GO:0015979: photosynthesis	1.33E-03
52	GO:0048193: Golgi vesicle transport	1.44E-03
53	GO:0006002: fructose 6-phosphate metabolic process	1.44E-03
54	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	1.44E-03
55	GO:0048589: developmental growth	1.62E-03
56	GO:0006349: regulation of gene expression by genetic imprinting	1.81E-03
57	GO:0043067: regulation of programmed cell death	1.81E-03
58	GO:0006281: DNA repair	1.84E-03
59	GO:0006325: chromatin organization	2.01E-03
60	GO:0000103: sulfate assimilation	2.01E-03
61	GO:0045036: protein targeting to chloroplast	2.01E-03
62	GO:0009970: cellular response to sulfate starvation	2.01E-03
63	GO:0006879: cellular iron ion homeostasis	2.21E-03
64	GO:0000272: polysaccharide catabolic process	2.21E-03
65	GO:0016569: covalent chromatin modification	2.31E-03
66	GO:0051726: regulation of cell cycle	2.60E-03
67	GO:0009934: regulation of meristem structural organization	2.87E-03
68	GO:0010039: response to iron ion	3.09E-03
69	GO:0007010: cytoskeleton organization	3.57E-03
70	GO:0046686: response to cadmium ion	3.71E-03
71	GO:0007017: microtubule-based process	3.82E-03
72	GO:0009695: jasmonic acid biosynthetic process	3.82E-03
73	GO:0051302: regulation of cell division	3.82E-03
74	GO:0006633: fatty acid biosynthetic process	3.82E-03
75	GO:0031408: oxylipin biosynthetic process	4.08E-03
76	GO:0061077: chaperone-mediated protein folding	4.08E-03
77	GO:0009294: DNA mediated transformation	4.60E-03
78	GO:0009411: response to UV	4.60E-03
79	GO:0042127: regulation of cell proliferation	4.87E-03
80	GO:0010468: regulation of gene expression	5.00E-03
81	GO:0008360: regulation of cell shape	5.72E-03
82	GO:0010197: polar nucleus fusion	5.72E-03
83	GO:0007059: chromosome segregation	6.01E-03
84	GO:0055072: iron ion homeostasis	6.31E-03
85	GO:0009658: chloroplast organization	6.48E-03
86	GO:0000302: response to reactive oxygen species	6.61E-03
87	GO:0016032: viral process	6.92E-03
88	GO:0006310: DNA recombination	7.55E-03
89	GO:0048366: leaf development	7.63E-03
90	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	8.88E-03
91	GO:0009627: systemic acquired resistance	9.22E-03
92	GO:0016311: dephosphorylation	9.93E-03
93	GO:0018298: protein-chromophore linkage	1.03E-02
94	GO:0008219: cell death	1.03E-02
95	GO:0048767: root hair elongation	1.07E-02
96	GO:0009910: negative regulation of flower development	1.14E-02
97	GO:0009867: jasmonic acid mediated signaling pathway	1.22E-02
98	GO:0009637: response to blue light	1.22E-02
99	GO:0006260: DNA replication	1.66E-02
100	GO:0009908: flower development	1.91E-02
101	GO:0009909: regulation of flower development	1.93E-02
102	GO:0009735: response to cytokinin	1.93E-02
103	GO:0006096: glycolytic process	2.02E-02
104	GO:0043086: negative regulation of catalytic activity	2.02E-02
105	GO:0006457: protein folding	2.74E-02
106	GO:0009790: embryo development	3.02E-02
107	GO:0006468: protein phosphorylation	4.07E-02
108	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	4.40E-02
109	GO:0006970: response to osmotic stress	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0004635: phosphoribosyl-AMP cyclohydrolase activity	0.00E+00
2	GO:0030795: jasmonate O-methyltransferase activity	0.00E+00
3	GO:0102078: methyl jasmonate methylesterase activity	0.00E+00
4	GO:0004636: phosphoribosyl-ATP diphosphatase activity	0.00E+00
5	GO:0046982: protein heterodimerization activity	5.61E-06
6	GO:0051082: unfolded protein binding	1.42E-05
7	GO:0003677: DNA binding	1.62E-05
8	GO:0004001: adenosine kinase activity	6.42E-05
9	GO:0008310: single-stranded DNA 3'-5' exodeoxyribonuclease activity	6.42E-05
10	GO:0044183: protein binding involved in protein folding	7.90E-05
11	GO:0004312: fatty acid synthase activity	1.55E-04
12	GO:0004817: cysteine-tRNA ligase activity	1.55E-04
13	GO:0003913: DNA photolyase activity	2.63E-04
14	GO:0010428: methyl-CpNpG binding	2.63E-04
15	GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity	2.63E-04
16	GO:0004781: sulfate adenylyltransferase (ATP) activity	2.63E-04
17	GO:0010429: methyl-CpNpN binding	2.63E-04
18	GO:0071917: triose-phosphate transmembrane transporter activity	2.63E-04
19	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	2.63E-04
20	GO:0008199: ferric iron binding	3.82E-04
21	GO:0004322: ferroxidase activity	3.82E-04
22	GO:0010385: double-stranded methylated DNA binding	5.10E-04
23	GO:0015120: phosphoglycerate transmembrane transporter activity	5.10E-04
24	GO:0047769: arogenate dehydratase activity	5.10E-04
25	GO:0004664: prephenate dehydratase activity	5.10E-04
26	GO:0005524: ATP binding	5.74E-04
27	GO:0004784: superoxide dismutase activity	7.90E-04
28	GO:0102229: amylopectin maltohydrolase activity	7.90E-04
29	GO:0080030: methyl indole-3-acetate esterase activity	7.90E-04
30	GO:0003682: chromatin binding	9.29E-04
31	GO:0016161: beta-amylase activity	9.40E-04
32	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	9.40E-04
33	GO:0003872: 6-phosphofructokinase activity	1.10E-03
34	GO:0009881: photoreceptor activity	1.10E-03
35	GO:0003843: 1,3-beta-D-glucan synthase activity	1.44E-03
36	GO:0008327: methyl-CpG binding	2.21E-03
37	GO:0003887: DNA-directed DNA polymerase activity	3.33E-03
38	GO:0004672: protein kinase activity	3.39E-03
39	GO:0051087: chaperone binding	3.82E-03
40	GO:0003713: transcription coactivator activity	5.72E-03
41	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	5.72E-03
42	GO:0005507: copper ion binding	5.93E-03
43	GO:0005355: glucose transmembrane transporter activity	6.01E-03
44	GO:0005200: structural constituent of cytoskeleton	7.88E-03
45	GO:0016597: amino acid binding	8.21E-03
46	GO:0005515: protein binding	8.27E-03
47	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.10E-02
48	GO:0003993: acid phosphatase activity	1.25E-02
49	GO:0042393: histone binding	1.33E-02
50	GO:0043621: protein self-association	1.54E-02
51	GO:0005198: structural molecule activity	1.58E-02
52	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	2.07E-02
53	GO:0004674: protein serine/threonine kinase activity	2.10E-02
54	GO:0004386: helicase activity	2.46E-02
55	GO:0016740: transferase activity	2.58E-02
56	GO:0046910: pectinesterase inhibitor activity	3.24E-02
57	GO:0015297: antiporter activity	3.30E-02
58	GO:0008017: microtubule binding	3.52E-02
59	GO:0042802: identical protein binding	4.04E-02
60	GO:0016757: transferase activity, transferring glycosyl groups	4.31E-02
61	GO:0008168: methyltransferase activity	4.52E-02
62	GO:0016788: hydrolase activity, acting on ester bonds	4.71E-02

Rank	GO Term	Adjusted P value
1	GO:0005721: pericentric heterochromatin	0.00E+00
2	GO:0000940: condensed chromosome outer kinetochore	0.00E+00
3	GO:0009570: chloroplast stroma	7.98E-09
4	GO:0000786: nucleosome	3.29E-08
5	GO:0000790: nuclear chromatin	9.02E-06
6	GO:0042644: chloroplast nucleoid	4.54E-05
7	GO:0010318: pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex	6.42E-05
8	GO:0008622: epsilon DNA polymerase complex	6.42E-05
9	GO:0031436: BRCA1-BARD1 complex	6.42E-05
10	GO:0009941: chloroplast envelope	8.36E-05
11	GO:0009579: thylakoid	1.33E-04
12	GO:0000792: heterochromatin	1.55E-04
13	GO:0070531: BRCA1-A complex	2.63E-04
14	GO:0009295: nucleoid	5.65E-04
15	GO:0010369: chromocenter	9.40E-04
16	GO:0000148: 1,3-beta-D-glucan synthase complex	1.44E-03
17	GO:0009539: photosystem II reaction center	1.44E-03
18	GO:0005720: nuclear heterochromatin	1.62E-03
19	GO:0005876: spindle microtubule	1.81E-03
20	GO:0009536: plastid	2.58E-03
21	GO:0048046: apoplast	3.57E-03
22	GO:0022626: cytosolic ribosome	3.58E-03
23	GO:0009654: photosystem II oxygen evolving complex	3.82E-03
24	GO:0009532: plastid stroma	4.08E-03
25	GO:0005730: nucleolus	4.20E-03
26	GO:0009507: chloroplast	4.33E-03
27	GO:0010319: stromule	7.88E-03
28	GO:0005856: cytoskeleton	1.58E-02
29	GO:0009535: chloroplast thylakoid membrane	2.57E-02
30	GO:0005623: cell	2.76E-02
31	GO:0005759: mitochondrial matrix	3.19E-02
32	GO:0009506: plasmodesma	3.29E-02
33	GO:0005622: intracellular	3.75E-02