gene detail

Gene description

TAIR ID: AT2G27840

Short description: histone deacetylase-related / HD-related

Pathogen responsiveness: -1.35

General responsiveness: -0.15

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

covalent chromatin modification, production of siRNA involved in RNA interference, regulation of transcription, DNA-templated, seed dormancy process, transcription

GO cellular component

nucleus, nucleolus

GO molecular function

histone deacetylase activity, hydrolase activity

Protein domain

No domain annotation

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790, AT3G14230, AT5G61850, AT2G43010, AT4G36990

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE56094_WT_HRPA-  view
GSE13739_EDS16_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

6 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-1.52	1.58E-04
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.83	1.86E-05
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.59	9.43E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.12	4.83E-04
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	1.51	2.88E-09
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	1.65	3.31E-02