GO Enrichment Analysis of Co-expressed Genes with
AT2G27840
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:1990481: mRNA pseudouridine synthesis | 0.00E+00 |
| 2 | GO:0000466: maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 0.00E+00 |
| 3 | GO:0000495: box H/ACA snoRNA 3'-end processing | 0.00E+00 |
| 4 | GO:0072321: chaperone-mediated protein transport | 0.00E+00 |
| 5 | GO:0044843: cell cycle G1/S phase transition | 0.00E+00 |
| 6 | GO:0006412: translation | 3.73E-44 |
| 7 | GO:0006364: rRNA processing | 5.39E-16 |
| 8 | GO:0042254: ribosome biogenesis | 3.77E-14 |
| 9 | GO:0000470: maturation of LSU-rRNA | 3.16E-07 |
| 10 | GO:0048569: post-embryonic animal organ development | 1.11E-06 |
| 11 | GO:0006626: protein targeting to mitochondrion | 1.11E-05 |
| 12 | GO:0042274: ribosomal small subunit biogenesis | 1.80E-05 |
| 13 | GO:0042273: ribosomal large subunit biogenesis | 1.80E-05 |
| 14 | GO:0000460: maturation of 5.8S rRNA | 1.80E-05 |
| 15 | GO:0000027: ribosomal large subunit assembly | 2.40E-05 |
| 16 | GO:0000028: ribosomal small subunit assembly | 1.06E-04 |
| 17 | GO:0030490: maturation of SSU-rRNA | 1.50E-04 |
| 18 | GO:0000494: box C/D snoRNA 3'-end processing | 1.50E-04 |
| 19 | GO:0000461: endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.50E-04 |
| 20 | GO:0000447: endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 1.50E-04 |
| 21 | GO:0043985: histone H4-R3 methylation | 1.50E-04 |
| 22 | GO:1990258: histone glutamine methylation | 1.50E-04 |
| 23 | GO:0006169: adenosine salvage | 1.50E-04 |
| 24 | GO:0006407: rRNA export from nucleus | 1.50E-04 |
| 25 | GO:0031120: snRNA pseudouridine synthesis | 1.50E-04 |
| 26 | GO:0031118: rRNA pseudouridine synthesis | 1.50E-04 |
| 27 | GO:0035266: meristem growth | 1.50E-04 |
| 28 | GO:0010162: seed dormancy process | 2.32E-04 |
| 29 | GO:0045041: protein import into mitochondrial intermembrane space | 3.42E-04 |
| 30 | GO:0009967: positive regulation of signal transduction | 3.42E-04 |
| 31 | GO:0000463: maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 3.42E-04 |
| 32 | GO:0009944: polarity specification of adaxial/abaxial axis | 5.53E-04 |
| 33 | GO:0042256: mature ribosome assembly | 5.61E-04 |
| 34 | GO:0045039: protein import into mitochondrial inner membrane | 5.61E-04 |
| 35 | GO:1902626: assembly of large subunit precursor of preribosome | 5.61E-04 |
| 36 | GO:0071215: cellular response to abscisic acid stimulus | 7.93E-04 |
| 37 | GO:0009294: DNA mediated transformation | 7.93E-04 |
| 38 | GO:0009855: determination of bilateral symmetry | 8.03E-04 |
| 39 | GO:0051131: chaperone-mediated protein complex assembly | 8.03E-04 |
| 40 | GO:0009553: embryo sac development | 1.02E-03 |
| 41 | GO:0006479: protein methylation | 1.06E-03 |
| 42 | GO:0044209: AMP salvage | 1.35E-03 |
| 43 | GO:0031167: rRNA methylation | 1.35E-03 |
| 44 | GO:0009955: adaxial/abaxial pattern specification | 1.98E-03 |
| 45 | GO:0042026: protein refolding | 1.98E-03 |
| 46 | GO:0000054: ribosomal subunit export from nucleus | 1.98E-03 |
| 47 | GO:0006458: 'de novo' protein folding | 1.98E-03 |
| 48 | GO:0080186: developmental vegetative growth | 2.33E-03 |
| 49 | GO:1900057: positive regulation of leaf senescence | 2.33E-03 |
| 50 | GO:0001510: RNA methylation | 3.08E-03 |
| 51 | GO:0001558: regulation of cell growth | 3.08E-03 |
| 52 | GO:0006099: tricarboxylic acid cycle | 3.23E-03 |
| 53 | GO:0010449: root meristem growth | 3.91E-03 |
| 54 | GO:0006820: anion transport | 5.27E-03 |
| 55 | GO:2000012: regulation of auxin polar transport | 5.75E-03 |
| 56 | GO:0006108: malate metabolic process | 5.75E-03 |
| 57 | GO:0010030: positive regulation of seed germination | 6.77E-03 |
| 58 | GO:0030150: protein import into mitochondrial matrix | 7.84E-03 |
| 59 | GO:0051302: regulation of cell division | 8.40E-03 |
| 60 | GO:0010073: meristem maintenance | 8.40E-03 |
| 61 | GO:0061077: chaperone-mediated protein folding | 8.97E-03 |
| 62 | GO:0007005: mitochondrion organization | 9.56E-03 |
| 63 | GO:0040007: growth | 1.02E-02 |
| 64 | GO:0009561: megagametogenesis | 1.08E-02 |
| 65 | GO:0008033: tRNA processing | 1.20E-02 |
| 66 | GO:0010501: RNA secondary structure unwinding | 1.20E-02 |
| 67 | GO:0000413: protein peptidyl-prolyl isomerization | 1.20E-02 |
| 68 | GO:0006413: translational initiation | 1.23E-02 |
| 69 | GO:0009960: endosperm development | 1.27E-02 |
| 70 | GO:0010305: leaf vascular tissue pattern formation | 1.27E-02 |
| 71 | GO:0010197: polar nucleus fusion | 1.27E-02 |
| 72 | GO:0016032: viral process | 1.55E-02 |
| 73 | GO:0032502: developmental process | 1.55E-02 |
| 74 | GO:0010029: regulation of seed germination | 1.99E-02 |
| 75 | GO:0010311: lateral root formation | 2.40E-02 |
| 76 | GO:0006811: ion transport | 2.48E-02 |
| 77 | GO:0000154: rRNA modification | 3.56E-02 |
| 78 | GO:0010224: response to UV-B | 4.15E-02 |
| 79 | GO:0048367: shoot system development | 4.67E-02 |
| 80 | GO:0016569: covalent chromatin modification | 4.99E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016018: cyclosporin A binding | 0.00E+00 |
| 2 | GO:0003735: structural constituent of ribosome | 1.72E-56 |
| 3 | GO:0003723: RNA binding | 1.70E-10 |
| 4 | GO:0000166: nucleotide binding | 1.70E-07 |
| 5 | GO:0030515: snoRNA binding | 9.13E-07 |
| 6 | GO:0003729: mRNA binding | 1.49E-05 |
| 7 | GO:0019843: rRNA binding | 1.54E-05 |
| 8 | GO:0008026: ATP-dependent helicase activity | 1.41E-04 |
| 9 | GO:0004001: adenosine kinase activity | 1.50E-04 |
| 10 | GO:0048037: cofactor binding | 1.50E-04 |
| 11 | GO:0008746: NAD(P)+ transhydrogenase activity | 1.50E-04 |
| 12 | GO:1990259: histone-glutamine methyltransferase activity | 1.50E-04 |
| 13 | GO:0042134: rRNA primary transcript binding | 1.50E-04 |
| 14 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.46E-04 |
| 15 | GO:0043021: ribonucleoprotein complex binding | 3.42E-04 |
| 16 | GO:0004775: succinate-CoA ligase (ADP-forming) activity | 3.42E-04 |
| 17 | GO:0005078: MAP-kinase scaffold activity | 3.42E-04 |
| 18 | GO:0004776: succinate-CoA ligase (GDP-forming) activity | 3.42E-04 |
| 19 | GO:0004407: histone deacetylase activity | 5.53E-04 |
| 20 | GO:0008649: rRNA methyltransferase activity | 5.61E-04 |
| 21 | GO:0043023: ribosomal large subunit binding | 8.03E-04 |
| 22 | GO:0016615: malate dehydrogenase activity | 1.65E-03 |
| 23 | GO:0030060: L-malate dehydrogenase activity | 1.98E-03 |
| 24 | GO:0008235: metalloexopeptidase activity | 2.33E-03 |
| 25 | GO:0015288: porin activity | 2.70E-03 |
| 26 | GO:0043022: ribosome binding | 2.70E-03 |
| 27 | GO:0008135: translation factor activity, RNA binding | 3.08E-03 |
| 28 | GO:0008308: voltage-gated anion channel activity | 3.08E-03 |
| 29 | GO:0001055: RNA polymerase II activity | 3.91E-03 |
| 30 | GO:0044183: protein binding involved in protein folding | 4.80E-03 |
| 31 | GO:0001054: RNA polymerase I activity | 4.80E-03 |
| 32 | GO:0001056: RNA polymerase III activity | 5.27E-03 |
| 33 | GO:0000049: tRNA binding | 5.27E-03 |
| 34 | GO:0009982: pseudouridine synthase activity | 5.75E-03 |
| 35 | GO:0015266: protein channel activity | 5.75E-03 |
| 36 | GO:0005507: copper ion binding | 6.39E-03 |
| 37 | GO:0003743: translation initiation factor activity | 1.54E-02 |
| 38 | GO:0004004: ATP-dependent RNA helicase activity | 2.15E-02 |
| 39 | GO:0003746: translation elongation factor activity | 2.74E-02 |
| 40 | GO:0000987: core promoter proximal region sequence-specific DNA binding | 2.83E-02 |
| 41 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 3.66E-02 |
| 42 | GO:0003924: GTPase activity | 3.74E-02 |
| 43 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 4.05E-02 |
| 44 | GO:0004650: polygalacturonase activity | 4.88E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0042719: mitochondrial intermembrane space protein transporter complex | 0.00E+00 |
| 2 | GO:0034457: Mpp10 complex | 0.00E+00 |
| 3 | GO:0005730: nucleolus | 4.33E-36 |
| 4 | GO:0022626: cytosolic ribosome | 1.32E-32 |
| 5 | GO:0005840: ribosome | 2.75E-31 |
| 6 | GO:0022625: cytosolic large ribosomal subunit | 2.47E-28 |
| 7 | GO:0022627: cytosolic small ribosomal subunit | 1.31E-26 |
| 8 | GO:0032040: small-subunit processome | 9.15E-10 |
| 9 | GO:0005829: cytosol | 1.35E-09 |
| 10 | GO:0009506: plasmodesma | 1.14E-08 |
| 11 | GO:0015934: large ribosomal subunit | 1.58E-08 |
| 12 | GO:0015935: small ribosomal subunit | 7.03E-07 |
| 13 | GO:0030687: preribosome, large subunit precursor | 9.13E-07 |
| 14 | GO:0005834: heterotrimeric G-protein complex | 6.50E-06 |
| 15 | GO:0005737: cytoplasm | 2.43E-05 |
| 16 | GO:0031428: box C/D snoRNP complex | 4.37E-05 |
| 17 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 1.06E-04 |
| 18 | GO:0005742: mitochondrial outer membrane translocase complex | 1.33E-04 |
| 19 | GO:0030686: 90S preribosome | 1.50E-04 |
| 20 | GO:0015030: Cajal body | 1.96E-04 |
| 21 | GO:0070545: PeBoW complex | 3.42E-04 |
| 22 | GO:0019013: viral nucleocapsid | 3.54E-04 |
| 23 | GO:0005758: mitochondrial intermembrane space | 5.53E-04 |
| 24 | GO:0005773: vacuole | 7.86E-04 |
| 25 | GO:0031429: box H/ACA snoRNP complex | 8.03E-04 |
| 26 | GO:0005618: cell wall | 1.16E-03 |
| 27 | GO:0016363: nuclear matrix | 1.98E-03 |
| 28 | GO:0034399: nuclear periphery | 2.70E-03 |
| 29 | GO:0046930: pore complex | 3.08E-03 |
| 30 | GO:0005736: DNA-directed RNA polymerase I complex | 3.49E-03 |
| 31 | GO:0005763: mitochondrial small ribosomal subunit | 3.49E-03 |
| 32 | GO:0016020: membrane | 3.79E-03 |
| 33 | GO:0005666: DNA-directed RNA polymerase III complex | 3.91E-03 |
| 34 | GO:0000418: DNA-directed RNA polymerase IV complex | 4.35E-03 |
| 35 | GO:0005634: nucleus | 4.72E-03 |
| 36 | GO:0005665: DNA-directed RNA polymerase II, core complex | 5.27E-03 |
| 37 | GO:0005743: mitochondrial inner membrane | 7.17E-03 |
| 38 | GO:0000419: DNA-directed RNA polymerase V complex | 7.30E-03 |
| 39 | GO:0005774: vacuolar membrane | 8.26E-03 |
| 40 | GO:0005732: small nucleolar ribonucleoprotein complex | 8.31E-03 |
| 41 | GO:0009532: plastid stroma | 8.97E-03 |
| 42 | GO:0005741: mitochondrial outer membrane | 8.97E-03 |
| 43 | GO:0005759: mitochondrial matrix | 1.20E-02 |
| 44 | GO:0016592: mediator complex | 1.55E-02 |
| 45 | GO:0010319: stromule | 1.76E-02 |
| 46 | GO:0030529: intracellular ribonucleoprotein complex | 1.92E-02 |
| 47 | GO:0005622: intracellular | 3.35E-02 |
| 48 | GO:0005681: spliceosomal complex | 4.56E-02 |