gene detail

Gene description

TAIR ID: AT2G04842

Short description: threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative

Pathogen responsiveness: NA

General responsiveness: NA

Orthologous

Rice:

OS02G0538000 OS08G0295300

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

threonyl-tRNA aminoacylation, embryo development ending in seed dormancy

GO cellular component

chloroplast stroma, chloroplast, mitochondrion

GO molecular function

threonine-tRNA ligase activity

Protein domain

Pfam	PF07973, Threonyl and Alanyl tRNA synthetase second additional domain
Pfam	PF00587, tRNA synthetase class II core domain (G, H, P, S and T)
Pfam	PF03129, Anticodon binding domain
SMART	SM00863, tRNA_SAD

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath00970: Aminoacyl-tRNA biosynthesis

Transcriptional regulation

Regulator:
AT3G24050, AT4G34680, AT2G45050, AT3G60530, AT4G36990

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

8 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.85	2.24E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-2.34	3.72E-15
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.69	3.87E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.56	8.90E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.67	4.33E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-2.16	8.84E-15
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-1.83	2.97E-12
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-1.90	5.01E-15