co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G04842

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0044154: histone H3-K14 acetylation	0.00E+00
2	GO:0009583: detection of light stimulus	0.00E+00
3	GO:0071000: response to magnetism	0.00E+00
4	GO:0046460: neutral lipid biosynthetic process	0.00E+00
5	GO:0031116: positive regulation of microtubule polymerization	0.00E+00
6	GO:0006114: glycerol biosynthetic process	0.00E+00
7	GO:0000372: Group I intron splicing	0.00E+00
8	GO:0043972: histone H3-K23 acetylation	0.00E+00
9	GO:0006003: fructose 2,6-bisphosphate metabolic process	0.00E+00
10	GO:0033528: S-methylmethionine cycle	0.00E+00
11	GO:0043087: regulation of GTPase activity	0.00E+00
12	GO:0051322: anaphase	5.77E-05
13	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.32E-04
14	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	2.97E-04
15	GO:0043971: histone H3-K18 acetylation	2.97E-04
16	GO:0048657: anther wall tapetum cell differentiation	2.97E-04
17	GO:0000012: single strand break repair	2.97E-04
18	GO:0042547: cell wall modification involved in multidimensional cell growth	2.97E-04
19	GO:0015798: myo-inositol transport	2.97E-04
20	GO:0072387: flavin adenine dinucleotide metabolic process	2.97E-04
21	GO:0043609: regulation of carbon utilization	2.97E-04
22	GO:0006436: tryptophanyl-tRNA aminoacylation	2.97E-04
23	GO:0000066: mitochondrial ornithine transport	2.97E-04
24	GO:0006353: DNA-templated transcription, termination	2.98E-04
25	GO:0045010: actin nucleation	2.98E-04
26	GO:0000373: Group II intron splicing	4.41E-04
27	GO:0010343: singlet oxygen-mediated programmed cell death	6.50E-04
28	GO:1901529: positive regulation of anion channel activity	6.50E-04
29	GO:0080005: photosystem stoichiometry adjustment	6.50E-04
30	GO:0010617: circadian regulation of calcium ion oscillation	6.50E-04
31	GO:0099402: plant organ development	6.50E-04
32	GO:0006508: proteolysis	9.12E-04
33	GO:0010207: photosystem II assembly	1.02E-03
34	GO:1902448: positive regulation of shade avoidance	1.05E-03
35	GO:0006000: fructose metabolic process	1.05E-03
36	GO:1901672: positive regulation of systemic acquired resistance	1.05E-03
37	GO:0001578: microtubule bundle formation	1.05E-03
38	GO:0045493: xylan catabolic process	1.05E-03
39	GO:0009793: embryo development ending in seed dormancy	1.20E-03
40	GO:0051639: actin filament network formation	1.51E-03
41	GO:0009800: cinnamic acid biosynthetic process	1.51E-03
42	GO:0010306: rhamnogalacturonan II biosynthetic process	1.51E-03
43	GO:1901332: negative regulation of lateral root development	1.51E-03
44	GO:0006168: adenine salvage	1.51E-03
45	GO:0006166: purine ribonucleoside salvage	1.51E-03
46	GO:0051781: positive regulation of cell division	2.02E-03
47	GO:0051764: actin crosslink formation	2.02E-03
48	GO:0015846: polyamine transport	2.02E-03
49	GO:0006552: leucine catabolic process	2.02E-03
50	GO:0007020: microtubule nucleation	2.02E-03
51	GO:1902347: response to strigolactone	2.02E-03
52	GO:0044209: AMP salvage	2.58E-03
53	GO:0010158: abaxial cell fate specification	2.58E-03
54	GO:0006465: signal peptide processing	2.58E-03
55	GO:0046785: microtubule polymerization	2.58E-03
56	GO:0010117: photoprotection	2.58E-03
57	GO:0046283: anthocyanin-containing compound metabolic process	2.58E-03
58	GO:1902183: regulation of shoot apical meristem development	2.58E-03
59	GO:0010268: brassinosteroid homeostasis	2.77E-03
60	GO:0048868: pollen tube development	2.77E-03
61	GO:0046323: glucose import	2.77E-03
62	GO:0009646: response to absence of light	2.98E-03
63	GO:0007059: chromosome segregation	2.98E-03
64	GO:0060918: auxin transport	3.19E-03
65	GO:1901371: regulation of leaf morphogenesis	3.19E-03
66	GO:0006559: L-phenylalanine catabolic process	3.19E-03
67	GO:0016132: brassinosteroid biosynthetic process	3.42E-03
68	GO:0007264: small GTPase mediated signal transduction	3.65E-03
69	GO:0010310: regulation of hydrogen peroxide metabolic process	3.84E-03
70	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	3.84E-03
71	GO:0034389: lipid particle organization	3.84E-03
72	GO:0010090: trichome morphogenesis	3.89E-03
73	GO:0016125: sterol metabolic process	4.15E-03
74	GO:0048528: post-embryonic root development	4.53E-03
75	GO:0022904: respiratory electron transport chain	4.53E-03
76	GO:0051510: regulation of unidimensional cell growth	4.53E-03
77	GO:0000910: cytokinesis	4.67E-03
78	GO:0048564: photosystem I assembly	5.26E-03
79	GO:0042255: ribosome assembly	5.26E-03
80	GO:0009704: de-etiolation	5.26E-03
81	GO:0000105: histidine biosynthetic process	5.26E-03
82	GO:0010411: xyloglucan metabolic process	5.82E-03
83	GO:0006002: fructose 6-phosphate metabolic process	6.03E-03
84	GO:0022900: electron transport chain	6.03E-03
85	GO:0009827: plant-type cell wall modification	6.03E-03
86	GO:0044030: regulation of DNA methylation	6.03E-03
87	GO:0009821: alkaloid biosynthetic process	6.83E-03
88	GO:0090305: nucleic acid phosphodiester bond hydrolysis	6.83E-03
89	GO:0019432: triglyceride biosynthetic process	6.83E-03
90	GO:0010206: photosystem II repair	6.83E-03
91	GO:2000024: regulation of leaf development	6.83E-03
92	GO:0009451: RNA modification	7.48E-03
93	GO:0009638: phototropism	7.67E-03
94	GO:0009086: methionine biosynthetic process	7.67E-03
95	GO:1900426: positive regulation of defense response to bacterium	7.67E-03
96	GO:0006259: DNA metabolic process	8.55E-03
97	GO:0006535: cysteine biosynthetic process from serine	8.55E-03
98	GO:0006265: DNA topological change	9.46E-03
99	GO:0006415: translational termination	9.46E-03
100	GO:0009750: response to fructose	9.46E-03
101	GO:0045037: protein import into chloroplast stroma	1.04E-02
102	GO:0009785: blue light signaling pathway	1.14E-02
103	GO:0030036: actin cytoskeleton organization	1.14E-02
104	GO:0010075: regulation of meristem growth	1.14E-02
105	GO:0006094: gluconeogenesis	1.14E-02
106	GO:0009767: photosynthetic electron transport chain	1.14E-02
107	GO:0006302: double-strand break repair	1.24E-02
108	GO:0009658: chloroplast organization	1.27E-02
109	GO:0080188: RNA-directed DNA methylation	1.34E-02
110	GO:0090351: seedling development	1.34E-02
111	GO:0006071: glycerol metabolic process	1.45E-02
112	GO:0051603: proteolysis involved in cellular protein catabolic process	1.48E-02
113	GO:0019344: cysteine biosynthetic process	1.56E-02
114	GO:0009944: polarity specification of adaxial/abaxial axis	1.56E-02
115	GO:0051017: actin filament bundle assembly	1.56E-02
116	GO:0006289: nucleotide-excision repair	1.56E-02
117	GO:2000377: regulation of reactive oxygen species metabolic process	1.56E-02
118	GO:0006417: regulation of translation	1.58E-02
119	GO:0080167: response to karrikin	1.67E-02
120	GO:0006418: tRNA aminoacylation for protein translation	1.68E-02
121	GO:0043622: cortical microtubule organization	1.68E-02
122	GO:0010073: meristem maintenance	1.68E-02
123	GO:0006825: copper ion transport	1.68E-02
124	GO:0015992: proton transport	1.79E-02
125	GO:0048511: rhythmic process	1.79E-02
126	GO:0046777: protein autophosphorylation	1.81E-02
127	GO:0009814: defense response, incompatible interaction	1.91E-02
128	GO:0035428: hexose transmembrane transport	1.91E-02
129	GO:0006730: one-carbon metabolic process	1.91E-02
130	GO:0031348: negative regulation of defense response	1.91E-02
131	GO:0080092: regulation of pollen tube growth	1.91E-02
132	GO:0010584: pollen exine formation	2.16E-02
133	GO:0019722: calcium-mediated signaling	2.16E-02
134	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.29E-02
135	GO:0008033: tRNA processing	2.42E-02
136	GO:0010118: stomatal movement	2.42E-02
137	GO:0045489: pectin biosynthetic process	2.55E-02
138	GO:0010154: fruit development	2.55E-02
139	GO:0010197: polar nucleus fusion	2.55E-02
140	GO:0007018: microtubule-based movement	2.68E-02
141	GO:0042752: regulation of circadian rhythm	2.68E-02
142	GO:0009749: response to glucose	2.82E-02
143	GO:0006397: mRNA processing	2.87E-02
144	GO:0042744: hydrogen peroxide catabolic process	2.91E-02
145	GO:0009790: embryo development	2.98E-02
146	GO:0016032: viral process	3.10E-02
147	GO:0032502: developmental process	3.10E-02
148	GO:0071281: cellular response to iron ion	3.25E-02
149	GO:0007267: cell-cell signaling	3.55E-02
150	GO:0016126: sterol biosynthetic process	3.85E-02
151	GO:0009911: positive regulation of flower development	3.85E-02
152	GO:0009739: response to gibberellin	3.93E-02
153	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	4.00E-02
154	GO:0007166: cell surface receptor signaling pathway	4.02E-02
155	GO:0016311: dephosphorylation	4.48E-02
156	GO:0009817: defense response to fungus, incompatible interaction	4.65E-02
157	GO:0048481: plant ovule development	4.65E-02
158	GO:0030244: cellulose biosynthetic process	4.65E-02
159	GO:0018298: protein-chromophore linkage	4.65E-02
160	GO:0009834: plant-type secondary cell wall biogenesis	4.98E-02
161	GO:0006499: N-terminal protein myristoylation	4.98E-02
162	GO:0010218: response to far red light	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
2	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
3	GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity	0.00E+00
4	GO:0004174: electron-transferring-flavoprotein dehydrogenase activity	0.00E+00
5	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
6	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
7	GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity	0.00E+00
8	GO:0019808: polyamine binding	0.00E+00
9	GO:0050613: delta14-sterol reductase activity	0.00E+00
10	GO:0003873: 6-phosphofructo-2-kinase activity	0.00E+00
11	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
12	GO:0048039: ubiquinone binding	0.00E+00
13	GO:0043783: oxidoreductase activity, oxidizing metal ions with flavin as acceptor	0.00E+00
14	GO:0004740: pyruvate dehydrogenase (acetyl-transferring) kinase activity	0.00E+00
15	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	2.97E-04
16	GO:0005290: L-histidine transmembrane transporter activity	2.97E-04
17	GO:0004008: copper-exporting ATPase activity	2.97E-04
18	GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity	2.97E-04
19	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.97E-04
20	GO:0004830: tryptophan-tRNA ligase activity	2.97E-04
21	GO:0003879: ATP phosphoribosyltransferase activity	2.97E-04
22	GO:0043022: ribosome binding	2.98E-04
23	GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity	6.50E-04
24	GO:0000064: L-ornithine transmembrane transporter activity	6.50E-04
25	GO:0005366: myo-inositol:proton symporter activity	6.50E-04
26	GO:0050017: L-3-cyanoalanine synthase activity	6.50E-04
27	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	6.50E-04
28	GO:0008430: selenium binding	1.05E-03
29	GO:0004180: carboxypeptidase activity	1.05E-03
30	GO:0045548: phenylalanine ammonia-lyase activity	1.05E-03
31	GO:0004848: ureidoglycolate hydrolase activity	1.05E-03
32	GO:0032549: ribonucleoside binding	1.05E-03
33	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.05E-03
34	GO:0016805: dipeptidase activity	1.05E-03
35	GO:0015144: carbohydrate transmembrane transporter activity	1.14E-03
36	GO:0005351: sugar:proton symporter activity	1.37E-03
37	GO:0015189: L-lysine transmembrane transporter activity	1.51E-03
38	GO:0005354: galactose transmembrane transporter activity	1.51E-03
39	GO:0015181: arginine transmembrane transporter activity	1.51E-03
40	GO:0009678: hydrogen-translocating pyrophosphatase activity	1.51E-03
41	GO:0003999: adenine phosphoribosyltransferase activity	1.51E-03
42	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.51E-03
43	GO:0009882: blue light photoreceptor activity	1.51E-03
44	GO:0010385: double-stranded methylated DNA binding	2.02E-03
45	GO:0070628: proteasome binding	2.02E-03
46	GO:0009044: xylan 1,4-beta-xylosidase activity	2.02E-03
47	GO:0046556: alpha-L-arabinofuranosidase activity	2.02E-03
48	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.58E-03
49	GO:0005355: glucose transmembrane transporter activity	2.98E-03
50	GO:0031593: polyubiquitin binding	3.19E-03
51	GO:2001070: starch binding	3.19E-03
52	GO:0004518: nuclease activity	3.65E-03
53	GO:0004124: cysteine synthase activity	3.84E-03
54	GO:0009927: histidine phosphotransfer kinase activity	3.84E-03
55	GO:0003730: mRNA 3'-UTR binding	3.84E-03
56	GO:0004144: diacylglycerol O-acyltransferase activity	3.84E-03
57	GO:0004656: procollagen-proline 4-dioxygenase activity	3.84E-03
58	GO:0004427: inorganic diphosphatase activity	4.53E-03
59	GO:0046872: metal ion binding	4.99E-03
60	GO:0005375: copper ion transmembrane transporter activity	6.03E-03
61	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	6.03E-03
62	GO:0008236: serine-type peptidase activity	6.13E-03
63	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	6.64E-03
64	GO:0005096: GTPase activator activity	6.78E-03
65	GO:0071949: FAD binding	6.83E-03
66	GO:0003747: translation release factor activity	6.83E-03
67	GO:0016844: strictosidine synthase activity	7.67E-03
68	GO:0008017: microtubule binding	7.70E-03
69	GO:0005089: Rho guanyl-nucleotide exchange factor activity	9.46E-03
70	GO:0001054: RNA polymerase I activity	9.46E-03
71	GO:0004185: serine-type carboxypeptidase activity	1.06E-02
72	GO:0035091: phosphatidylinositol binding	1.14E-02
73	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.14E-02
74	GO:0051537: 2 iron, 2 sulfur cluster binding	1.14E-02
75	GO:0004190: aspartic-type endopeptidase activity	1.34E-02
76	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.45E-02
77	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.45E-02
78	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.45E-02
79	GO:0003690: double-stranded DNA binding	1.48E-02
80	GO:0043130: ubiquitin binding	1.56E-02
81	GO:0031418: L-ascorbic acid binding	1.56E-02
82	GO:0030570: pectate lyase activity	2.03E-02
83	GO:0003727: single-stranded RNA binding	2.16E-02
84	GO:0004812: aminoacyl-tRNA ligase activity	2.29E-02
85	GO:0004402: histone acetyltransferase activity	2.42E-02
86	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.50E-02
87	GO:0008536: Ran GTPase binding	2.55E-02
88	GO:0003723: RNA binding	2.55E-02
89	GO:0019843: rRNA binding	2.55E-02
90	GO:0004527: exonuclease activity	2.55E-02
91	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.62E-02
92	GO:0010181: FMN binding	2.68E-02
93	GO:0019901: protein kinase binding	2.82E-02
94	GO:0004252: serine-type endopeptidase activity	2.83E-02
95	GO:0048038: quinone binding	2.96E-02
96	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.96E-02
97	GO:0004519: endonuclease activity	3.02E-02
98	GO:0051015: actin filament binding	3.25E-02
99	GO:0003684: damaged DNA binding	3.39E-02
100	GO:0005525: GTP binding	3.45E-02
101	GO:0008237: metallopeptidase activity	3.55E-02
102	GO:0016413: O-acetyltransferase activity	3.70E-02
103	GO:0004721: phosphoprotein phosphatase activity	4.32E-02
104	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.32E-02
105	GO:0005506: iron ion binding	4.55E-02
106	GO:0004222: metalloendopeptidase activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0017133: mitochondrial electron transfer flavoprotein complex	0.00E+00
2	GO:0042597: periplasmic space	0.00E+00
3	GO:0009507: chloroplast	3.20E-09
4	GO:0009574: preprophase band	1.34E-06
5	GO:0031209: SCAR complex	1.32E-04
6	GO:0009535: chloroplast thylakoid membrane	3.71E-04
7	GO:0016605: PML body	1.05E-03
8	GO:0032432: actin filament bundle	1.51E-03
9	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.02E-03
10	GO:0030660: Golgi-associated vesicle membrane	2.02E-03
11	GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane	2.02E-03
12	GO:0072686: mitotic spindle	2.58E-03
13	GO:0010005: cortical microtubule, transverse to long axis	3.84E-03
14	GO:0030529: intracellular ribonucleoprotein complex	4.94E-03
15	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	5.26E-03
16	GO:0031305: integral component of mitochondrial inner membrane	5.26E-03
17	GO:0005811: lipid particle	6.03E-03
18	GO:0005736: DNA-directed RNA polymerase I complex	6.83E-03
19	GO:0016604: nuclear body	7.67E-03
20	GO:0009505: plant-type cell wall	7.82E-03
21	GO:0055028: cortical microtubule	8.55E-03
22	GO:0005740: mitochondrial envelope	8.55E-03
23	GO:0016324: apical plasma membrane	8.55E-03
24	GO:0005765: lysosomal membrane	9.46E-03
25	GO:0005884: actin filament	9.46E-03
26	GO:0005773: vacuole	9.98E-03
27	GO:0005938: cell cortex	1.14E-02
28	GO:0005578: proteinaceous extracellular matrix	1.14E-02
29	GO:0005856: cytoskeleton	1.19E-02
30	GO:0030176: integral component of endoplasmic reticulum membrane	1.34E-02
31	GO:0005874: microtubule	1.59E-02
32	GO:0042651: thylakoid membrane	1.68E-02
33	GO:0009532: plastid stroma	1.79E-02
34	GO:0005871: kinesin complex	2.29E-02
35	GO:0009524: phragmoplast	2.69E-02
36	GO:0009295: nucleoid	3.55E-02
37	GO:0009570: chloroplast stroma	3.71E-02
38	GO:0005768: endosome	4.00E-02
39	GO:0019005: SCF ubiquitin ligase complex	4.65E-02
40	GO:0009707: chloroplast outer membrane	4.65E-02