Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G04842

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:1904966: positive regulation of vitamin E biosynthetic process0.00E+00
2GO:0015882: L-ascorbic acid transport0.00E+00
3GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
4GO:0008298: intracellular mRNA localization0.00E+00
5GO:0006114: glycerol biosynthetic process0.00E+00
6GO:1904964: positive regulation of phytol biosynthetic process0.00E+00
7GO:0051246: regulation of protein metabolic process0.00E+00
8GO:0006399: tRNA metabolic process0.00E+00
9GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
10GO:0070125: mitochondrial translational elongation0.00E+00
11GO:1901401: regulation of tetrapyrrole metabolic process0.00E+00
12GO:0010323: negative regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway0.00E+00
13GO:1901918: negative regulation of exoribonuclease activity0.00E+00
14GO:0098586: cellular response to virus0.00E+00
15GO:0044249: cellular biosynthetic process0.00E+00
16GO:0017009: protein-phycocyanobilin linkage0.00E+00
17GO:0019447: D-cysteine catabolic process0.00E+00
18GO:0042821: pyridoxal biosynthetic process0.00E+00
19GO:0042820: vitamin B6 catabolic process0.00E+00
20GO:0015979: photosynthesis4.72E-08
21GO:0018298: protein-chromophore linkage3.33E-07
22GO:1902326: positive regulation of chlorophyll biosynthetic process4.84E-06
23GO:0015995: chlorophyll biosynthetic process6.09E-06
24GO:0009657: plastid organization1.41E-05
25GO:0005977: glycogen metabolic process1.71E-05
26GO:0090391: granum assembly1.71E-05
27GO:0009658: chloroplast organization1.88E-05
28GO:0009902: chloroplast relocation6.79E-05
29GO:0010021: amylopectin biosynthetic process6.79E-05
30GO:0009765: photosynthesis, light harvesting6.79E-05
31GO:0006021: inositol biosynthetic process6.79E-05
32GO:0019253: reductive pentose-phosphate cycle8.01E-05
33GO:0016120: carotene biosynthetic process1.07E-04
34GO:0016123: xanthophyll biosynthetic process1.07E-04
35GO:0055114: oxidation-reduction process1.14E-04
36GO:0009643: photosynthetic acclimation1.54E-04
37GO:0046855: inositol phosphate dephosphorylation1.54E-04
38GO:0071470: cellular response to osmotic stress2.10E-04
39GO:0033388: putrescine biosynthetic process from arginine3.27E-04
40GO:0010322: regulation of isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.27E-04
41GO:0000481: maturation of 5S rRNA3.27E-04
42GO:0071277: cellular response to calcium ion3.27E-04
43GO:0042371: vitamin K biosynthetic process3.27E-04
44GO:0006436: tryptophanyl-tRNA aminoacylation3.27E-04
45GO:1902458: positive regulation of stomatal opening3.27E-04
46GO:0010028: xanthophyll cycle3.27E-04
47GO:0034337: RNA folding3.27E-04
48GO:0010729: positive regulation of hydrogen peroxide biosynthetic process3.27E-04
49GO:0006419: alanyl-tRNA aminoacylation3.27E-04
50GO:0010362: negative regulation of anion channel activity by blue light3.27E-04
51GO:0009443: pyridoxal 5'-phosphate salvage3.27E-04
52GO:0048564: photosystem I assembly3.44E-04
53GO:0030187: melatonin biosynthetic process7.13E-04
54GO:0006432: phenylalanyl-tRNA aminoacylation7.13E-04
55GO:0000256: allantoin catabolic process7.13E-04
56GO:0042548: regulation of photosynthesis, light reaction7.13E-04
57GO:0009446: putrescine biosynthetic process7.13E-04
58GO:1903426: regulation of reactive oxygen species biosynthetic process7.13E-04
59GO:0006568: tryptophan metabolic process7.13E-04
60GO:0010024: phytochromobilin biosynthetic process7.13E-04
61GO:0046741: transport of virus in host, tissue to tissue7.13E-04
62GO:0042853: L-alanine catabolic process7.13E-04
63GO:0080005: photosystem stoichiometry adjustment7.13E-04
64GO:0048314: embryo sac morphogenesis7.13E-04
65GO:0019752: carboxylic acid metabolic process7.13E-04
66GO:0006790: sulfur compound metabolic process9.18E-04
67GO:0006006: glucose metabolic process1.04E-03
68GO:0009767: photosynthetic electron transport chain1.04E-03
69GO:0006788: heme oxidation1.16E-03
70GO:0006013: mannose metabolic process1.16E-03
71GO:0002230: positive regulation of defense response to virus by host1.16E-03
72GO:1901672: positive regulation of systemic acquired resistance1.16E-03
73GO:0010136: ureide catabolic process1.16E-03
74GO:0009405: pathogenesis1.16E-03
75GO:0010207: photosystem II assembly1.17E-03
76GO:0010020: chloroplast fission1.17E-03
77GO:0046854: phosphatidylinositol phosphorylation1.31E-03
78GO:0009637: response to blue light1.37E-03
79GO:0009853: photorespiration1.37E-03
80GO:0006413: translational initiation1.58E-03
81GO:0043572: plastid fission1.66E-03
82GO:2001141: regulation of RNA biosynthetic process1.66E-03
83GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.66E-03
84GO:0006020: inositol metabolic process1.66E-03
85GO:0009052: pentose-phosphate shunt, non-oxidative branch1.66E-03
86GO:0006809: nitric oxide biosynthetic process1.66E-03
87GO:0006145: purine nucleobase catabolic process1.66E-03
88GO:0046739: transport of virus in multicellular host1.66E-03
89GO:0051016: barbed-end actin filament capping1.66E-03
90GO:0009793: embryo development ending in seed dormancy1.75E-03
91GO:0007623: circadian rhythm1.76E-03
92GO:0009768: photosynthesis, light harvesting in photosystem I1.78E-03
93GO:0010114: response to red light1.89E-03
94GO:0031935: regulation of chromatin silencing2.23E-03
95GO:0015994: chlorophyll metabolic process2.23E-03
96GO:0006564: L-serine biosynthetic process2.84E-03
97GO:0045038: protein import into chloroplast thylakoid membrane2.84E-03
98GO:0006282: regulation of DNA repair2.84E-03
99GO:0016558: protein import into peroxisome matrix2.84E-03
100GO:0034052: positive regulation of plant-type hypersensitive response2.84E-03
101GO:0006096: glycolytic process3.43E-03
102GO:0042549: photosystem II stabilization3.51E-03
103GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.51E-03
104GO:0019252: starch biosynthetic process3.68E-03
105GO:0009791: post-embryonic development3.68E-03
106GO:0010193: response to ozone3.94E-03
107GO:0010189: vitamin E biosynthetic process4.23E-03
108GO:0019509: L-methionine salvage from methylthioadenosine4.23E-03
109GO:0080167: response to karrikin4.77E-03
110GO:0006400: tRNA modification4.99E-03
111GO:0006401: RNA catabolic process4.99E-03
112GO:0048528: post-embryonic root development4.99E-03
113GO:0009772: photosynthetic electron transport in photosystem II4.99E-03
114GO:1900056: negative regulation of leaf senescence4.99E-03
115GO:0010196: nonphotochemical quenching4.99E-03
116GO:0009645: response to low light intensity stimulus4.99E-03
117GO:0046686: response to cadmium ion5.55E-03
118GO:0010027: thylakoid membrane organization5.70E-03
119GO:0009704: de-etiolation5.80E-03
120GO:0032508: DNA duplex unwinding5.80E-03
121GO:2000070: regulation of response to water deprivation5.80E-03
122GO:0009231: riboflavin biosynthetic process5.80E-03
123GO:0016559: peroxisome fission5.80E-03
124GO:0006402: mRNA catabolic process5.80E-03
125GO:0009787: regulation of abscisic acid-activated signaling pathway5.80E-03
126GO:0009642: response to light intensity5.80E-03
127GO:0009816: defense response to bacterium, incompatible interaction6.03E-03
128GO:0017004: cytochrome complex assembly6.65E-03
129GO:0071482: cellular response to light stimulus6.65E-03
130GO:0000373: Group II intron splicing7.54E-03
131GO:0098656: anion transmembrane transport7.54E-03
132GO:0009821: alkaloid biosynthetic process7.54E-03
133GO:0090333: regulation of stomatal closure7.54E-03
134GO:0010380: regulation of chlorophyll biosynthetic process8.48E-03
135GO:0031425: chloroplast RNA processing8.48E-03
136GO:1900426: positive regulation of defense response to bacterium8.48E-03
137GO:0009638: phototropism8.48E-03
138GO:0007568: aging8.61E-03
139GO:0055085: transmembrane transport9.02E-03
140GO:0045036: protein targeting to chloroplast9.45E-03
141GO:0006949: syncytium formation9.45E-03
142GO:0006259: DNA metabolic process9.45E-03
143GO:0006352: DNA-templated transcription, initiation1.05E-02
144GO:0006415: translational termination1.05E-02
145GO:0018119: peptidyl-cysteine S-nitrosylation1.05E-02
146GO:0006265: DNA topological change1.05E-02
147GO:0009773: photosynthetic electron transport in photosystem I1.05E-02
148GO:0009409: response to cold1.20E-02
149GO:0006807: nitrogen compound metabolic process1.26E-02
150GO:0009644: response to high light intensity1.32E-02
151GO:0071732: cellular response to nitric oxide1.49E-02
152GO:0019853: L-ascorbic acid biosynthetic process1.49E-02
153GO:0006863: purine nucleobase transport1.61E-02
154GO:0006833: water transport1.61E-02
155GO:0006364: rRNA processing1.65E-02
156GO:0080147: root hair cell development1.73E-02
157GO:0009863: salicylic acid mediated signaling pathway1.73E-02
158GO:0009735: response to cytokinin1.79E-02
159GO:0007017: microtubule-based process1.86E-02
160GO:0051302: regulation of cell division1.86E-02
161GO:0008299: isoprenoid biosynthetic process1.86E-02
162GO:0006418: tRNA aminoacylation for protein translation1.86E-02
163GO:0051321: meiotic cell cycle1.99E-02
164GO:0009416: response to light stimulus2.05E-02
165GO:0080092: regulation of pollen tube growth2.12E-02
166GO:0071369: cellular response to ethylene stimulus2.25E-02
167GO:0009625: response to insect2.25E-02
168GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.25E-02
169GO:0009693: ethylene biosynthetic process2.25E-02
170GO:0009553: embryo sac development2.28E-02
171GO:0009306: protein secretion2.39E-02
172GO:0006396: RNA processing2.42E-02
173GO:0016117: carotenoid biosynthetic process2.53E-02
174GO:0008033: tRNA processing2.68E-02
175GO:0034220: ion transmembrane transport2.68E-02
176GO:0010118: stomatal movement2.68E-02
177GO:0048868: pollen tube development2.82E-02
178GO:0071472: cellular response to salt stress2.82E-02
179GO:0015986: ATP synthesis coupled proton transport2.97E-02
180GO:0007059: chromosome segregation2.97E-02
181GO:0009058: biosynthetic process3.10E-02
182GO:0008654: phospholipid biosynthetic process3.12E-02
183GO:0002229: defense response to oomycetes3.28E-02
184GO:0006635: fatty acid beta-oxidation3.28E-02
185GO:0000302: response to reactive oxygen species3.28E-02
186GO:0007264: small GTPase mediated signal transduction3.44E-02
187GO:0031047: gene silencing by RNA3.44E-02
188GO:0016032: viral process3.44E-02
189GO:0019761: glucosinolate biosynthetic process3.44E-02
190GO:0071281: cellular response to iron ion3.60E-02
191GO:0009828: plant-type cell wall loosening3.76E-02
192GO:0051607: defense response to virus4.09E-02
193GO:0009451: RNA modification4.15E-02
194GO:0009788: negative regulation of abscisic acid-activated signaling pathway4.43E-02
195GO:0042128: nitrate assimilation4.61E-02
196GO:0016311: dephosphorylation4.96E-02
RankGO TermAdjusted P value
1GO:0015229: L-ascorbic acid transporter activity0.00E+00
2GO:0045435: lycopene epsilon cyclase activity0.00E+00
3GO:0004760: serine-pyruvate transaminase activity0.00E+00
4GO:0003858: 3-hydroxybutyrate dehydrogenase activity0.00E+00
5GO:0042623: ATPase activity, coupled0.00E+00
6GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
7GO:0050126: N-carbamoylputrescine amidase activity0.00E+00
8GO:0048529: magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity0.00E+00
9GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity0.00E+00
10GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
11GO:0050281: serine-glyoxylate transaminase activity0.00E+00
12GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity0.00E+00
13GO:0004059: aralkylamine N-acetyltransferase activity0.00E+00
14GO:0043136: glycerol-3-phosphatase activity0.00E+00
15GO:0000121: glycerol-1-phosphatase activity0.00E+00
16GO:0046406: magnesium protoporphyrin IX methyltransferase activity0.00E+00
17GO:0008660: 1-aminocyclopropane-1-carboxylate deaminase activity0.00E+00
18GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
19GO:0019148: D-cysteine desulfhydrase activity0.00E+00
20GO:0071522: ureidoglycine aminohydrolase activity0.00E+00
21GO:0010276: phytol kinase activity0.00E+00
22GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity0.00E+00
23GO:0016168: chlorophyll binding4.60E-06
24GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity4.84E-06
25GO:0052832: inositol monophosphate 3-phosphatase activity4.84E-06
26GO:0019156: isoamylase activity4.84E-06
27GO:0008934: inositol monophosphate 1-phosphatase activity4.84E-06
28GO:0052833: inositol monophosphate 4-phosphatase activity4.84E-06
29GO:0070402: NADPH binding1.71E-05
30GO:0043495: protein anchor6.79E-05
31GO:0008453: alanine-glyoxylate transaminase activity6.79E-05
32GO:0004556: alpha-amylase activity1.54E-04
33GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.10E-04
34GO:0022891: substrate-specific transmembrane transporter activity2.25E-04
35GO:0019899: enzyme binding2.73E-04
36GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity3.27E-04
37GO:0004830: tryptophan-tRNA ligase activity3.27E-04
38GO:0030941: chloroplast targeting sequence binding3.27E-04
39GO:0004654: polyribonucleotide nucleotidyltransferase activity3.27E-04
40GO:0010347: L-galactose-1-phosphate phosphatase activity3.27E-04
41GO:0016784: 3-mercaptopyruvate sulfurtransferase activity3.27E-04
42GO:0004425: indole-3-glycerol-phosphate synthase activity3.27E-04
43GO:0004451: isocitrate lyase activity3.27E-04
44GO:0047958: glycine:2-oxoglutarate aminotransferase activity3.27E-04
45GO:0004813: alanine-tRNA ligase activity3.27E-04
46GO:0010177: 2-(2'-methylthio)ethylmalate synthase activity3.27E-04
47GO:0016853: isomerase activity3.82E-04
48GO:0019200: carbohydrate kinase activity7.13E-04
49GO:0004826: phenylalanine-tRNA ligase activity7.13E-04
50GO:0047746: chlorophyllase activity7.13E-04
51GO:0004618: phosphoglycerate kinase activity7.13E-04
52GO:0009977: proton motive force dependent protein transmembrane transporter activity7.13E-04
53GO:0004617: phosphoglycerate dehydrogenase activity7.13E-04
54GO:0019172: glyoxalase III activity7.13E-04
55GO:0005089: Rho guanyl-nucleotide exchange factor activity8.05E-04
56GO:0000049: tRNA binding9.18E-04
57GO:0004148: dihydrolipoyl dehydrogenase activity1.16E-03
58GO:0004751: ribose-5-phosphate isomerase activity1.16E-03
59GO:0030267: glyoxylate reductase (NADP) activity1.16E-03
60GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.16E-03
61GO:0010277: chlorophyllide a oxygenase [overall] activity1.16E-03
62GO:0016491: oxidoreductase activity1.26E-03
63GO:0031409: pigment binding1.45E-03
64GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity1.66E-03
65GO:0016851: magnesium chelatase activity1.66E-03
66GO:0009882: blue light photoreceptor activity1.66E-03
67GO:0004792: thiosulfate sulfurtransferase activity1.66E-03
68GO:0016149: translation release factor activity, codon specific1.66E-03
69GO:0051537: 2 iron, 2 sulfur cluster binding2.09E-03
70GO:0003924: GTPase activity2.17E-03
71GO:0004392: heme oxygenase (decyclizing) activity2.23E-03
72GO:0001053: plastid sigma factor activity2.23E-03
73GO:0051861: glycolipid binding2.23E-03
74GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.23E-03
75GO:0016810: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds2.23E-03
76GO:0016987: sigma factor activity2.23E-03
77GO:0051287: NAD binding2.41E-03
78GO:0042802: identical protein binding2.54E-03
79GO:0016702: oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen2.84E-03
80GO:0010181: FMN binding3.43E-03
81GO:0000293: ferric-chelate reductase activity3.51E-03
82GO:0004605: phosphatidate cytidylyltransferase activity3.51E-03
83GO:0004462: lactoylglutathione lyase activity3.51E-03
84GO:0048038: quinone binding3.94E-03
85GO:0004559: alpha-mannosidase activity4.23E-03
86GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity4.23E-03
87GO:0005525: GTP binding4.43E-03
88GO:0016597: amino acid binding5.38E-03
89GO:0004033: aldo-keto reductase (NADP) activity5.80E-03
90GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity6.65E-03
91GO:0008135: translation factor activity, RNA binding6.65E-03
92GO:0003747: translation release factor activity7.54E-03
93GO:0016844: strictosidine synthase activity8.48E-03
94GO:0045309: protein phosphorylated amino acid binding8.48E-03
95GO:0050897: cobalt ion binding8.61E-03
96GO:0003746: translation elongation factor activity9.44E-03
97GO:0019904: protein domain specific binding1.05E-02
98GO:0003743: translation initiation factor activity1.06E-02
99GO:0005315: inorganic phosphate transmembrane transporter activity1.26E-02
100GO:0031072: heat shock protein binding1.26E-02
101GO:0000155: phosphorelay sensor kinase activity1.26E-02
102GO:0000175: 3'-5'-exoribonuclease activity1.26E-02
103GO:0008081: phosphoric diester hydrolase activity1.26E-02
104GO:0003723: RNA binding1.68E-02
105GO:0005528: FK506 binding1.73E-02
106GO:0031625: ubiquitin protein ligase binding1.83E-02
107GO:0005345: purine nucleobase transmembrane transporter activity1.86E-02
108GO:0004176: ATP-dependent peptidase activity1.99E-02
109GO:0003727: single-stranded RNA binding2.39E-02
110GO:0008514: organic anion transmembrane transporter activity2.39E-02
111GO:0004812: aminoacyl-tRNA ligase activity2.53E-02
112GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.82E-02
113GO:0008080: N-acetyltransferase activity2.82E-02
114GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen3.02E-02
115GO:0004519: endonuclease activity3.60E-02
116GO:0008483: transaminase activity3.92E-02
117GO:0015250: water channel activity4.26E-02
RankGO TermAdjusted P value
1GO:0009349: riboflavin synthase complex0.00E+00
2GO:0010368: chloroplast isoamylase complex0.00E+00
3GO:0009507: chloroplast8.00E-63
4GO:0009535: chloroplast thylakoid membrane1.97E-28
5GO:0009534: chloroplast thylakoid1.67E-19
6GO:0009570: chloroplast stroma4.33E-18
7GO:0009941: chloroplast envelope3.99E-15
8GO:0009579: thylakoid6.20E-08
9GO:0009523: photosystem II1.22E-06
10GO:0010287: plastoglobule1.29E-06
11GO:0009543: chloroplast thylakoid lumen1.56E-06
12GO:0042651: thylakoid membrane6.49E-06
13GO:0009707: chloroplast outer membrane1.19E-04
14GO:0031969: chloroplast membrane2.33E-04
15GO:0031977: thylakoid lumen2.43E-04
16GO:0009515: granal stacked thylakoid3.27E-04
17GO:0009782: photosystem I antenna complex3.27E-04
18GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.07E-04
19GO:0008290: F-actin capping protein complex7.13E-04
20GO:0009706: chloroplast inner membrane7.73E-04
21GO:0033281: TAT protein transport complex1.16E-03
22GO:0010007: magnesium chelatase complex1.16E-03
23GO:0030095: chloroplast photosystem II1.17E-03
24GO:0042646: plastid nucleoid1.66E-03
25GO:0009654: photosystem II oxygen evolving complex1.78E-03
26GO:0030286: dynein complex2.23E-03
27GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)2.23E-03
28GO:0005851: eukaryotic translation initiation factor 2B complex3.51E-03
29GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.51E-03
30GO:0019898: extrinsic component of membrane3.68E-03
31GO:0016363: nuclear matrix4.23E-03
32GO:0031359: integral component of chloroplast outer membrane4.99E-03
33GO:0010319: stromule5.07E-03
34GO:0009295: nucleoid5.07E-03
35GO:0009538: photosystem I reaction center5.80E-03
36GO:0016020: membrane6.42E-03
37GO:0005759: mitochondrial matrix7.73E-03
38GO:0016324: apical plasma membrane9.45E-03
39GO:0048471: perinuclear region of cytoplasm1.05E-02
40GO:0000311: plastid large ribosomal subunit1.15E-02
41GO:0032040: small-subunit processome1.15E-02
42GO:0009508: plastid chromosome1.26E-02
43GO:0030076: light-harvesting complex1.49E-02
44GO:0045271: respiratory chain complex I1.86E-02
45GO:0005747: mitochondrial respiratory chain complex I2.02E-02
46GO:0005777: peroxisome2.51E-02
47GO:0009522: photosystem I2.97E-02
48GO:0005778: peroxisomal membrane3.92E-02
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Gene type



Gene DE type