Gene: AT2G02980
     


Gene description


TAIR ID: AT2G02980

Short description: Pentatricopeptide repeat (PPR) superfamily protein

Pathogen responsiveness: -1.79

General responsiveness: -2.53

Orthologous


Rice: No orthologous gene
Maize:

GRMZM2G099604  

Wheat: No orthologous gene

GO biological process


chloroplast RNA processing, RNA modification, mRNA processing


GO cellular component


mitochondrion, chloroplast


GO molecular function


endonuclease activity, zinc ion binding, RNA binding


Protein domain


PfamPF13041, PPR repeat family
PfamPF14432, DYW family of nucleic acid deaminases
PfamPF01535, PPR repeat

KEGG pathway


Not involved in KEGG pathway


Transcriptional regulation


Regulator:
AT1G51600, AT5G41315

Target:
none

Protein-protein interaction network


No Interactor


Differentially expressed condition


7 conditions



SeriesControlTreatmentLog2FCAdj. P value
GSE37269St0, WT, controlSt0, WT, TEV 21 d-1.511.21E-02
GSE40544Col, WT, controlCol, WT, PstDC3000 EV-1.575.19E-03
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 12 h-1.907.82E-14
GSE45212Col, WT, PstDC3000 AvrRpt2 0 hCol, WT, PstDC3000 AvrRpt2 8 h-1.881.41E-13
GSE45212Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 12 h-1.551.52E-12
GSE45214Col, med14, PstDC3000 AvrRpt2 0 hCol, med14, PstDC3000 AvrRpt2 4 h-1.685.84E-13
GSE45214Col, med16, PstDC3000 AvrRpt2 0 hCol, med16, PstDC3000 AvrRpt2 4 h-2.106.58E-15






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