co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G02980

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1901698: response to nitrogen compound	0.00E+00
2	GO:0007638: mechanosensory behavior	0.00E+00
3	GO:0009606: tropism	0.00E+00
4	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
5	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
6	GO:0097164: ammonium ion metabolic process	0.00E+00
7	GO:0045184: establishment of protein localization	0.00E+00
8	GO:0071311: cellular response to acetate	0.00E+00
9	GO:0015843: methylammonium transport	0.00E+00
10	GO:0031222: arabinan catabolic process	0.00E+00
11	GO:0070979: protein K11-linked ubiquitination	0.00E+00
12	GO:0071260: cellular response to mechanical stimulus	0.00E+00
13	GO:0009734: auxin-activated signaling pathway	1.87E-12
14	GO:0009733: response to auxin	1.03E-11
15	GO:0046620: regulation of organ growth	3.50E-11
16	GO:0009926: auxin polar transport	3.67E-08
17	GO:0040008: regulation of growth	3.56E-06
18	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.33E-06
19	GO:0007389: pattern specification process	4.17E-05
20	GO:0051513: regulation of monopolar cell growth	8.30E-05
21	GO:2000038: regulation of stomatal complex development	1.44E-04
22	GO:0010252: auxin homeostasis	1.75E-04
23	GO:0032876: negative regulation of DNA endoreduplication	2.20E-04
24	GO:0042659: regulation of cell fate specification	5.12E-04
25	GO:1901537: positive regulation of DNA demethylation	5.12E-04
26	GO:0051418: microtubule nucleation by microtubule organizing center	5.12E-04
27	GO:0090558: plant epidermis development	5.12E-04
28	GO:0010480: microsporocyte differentiation	5.12E-04
29	GO:0035987: endodermal cell differentiation	5.12E-04
30	GO:0006436: tryptophanyl-tRNA aminoacylation	5.12E-04
31	GO:0034080: CENP-A containing nucleosome assembly	5.12E-04
32	GO:0000066: mitochondrial ornithine transport	5.12E-04
33	GO:0009416: response to light stimulus	6.14E-04
34	GO:0000373: Group II intron splicing	9.66E-04
35	GO:0033566: gamma-tubulin complex localization	1.10E-03
36	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.10E-03
37	GO:0010569: regulation of double-strand break repair via homologous recombination	1.10E-03
38	GO:2000039: regulation of trichome morphogenesis	1.10E-03
39	GO:0070981: L-asparagine biosynthetic process	1.10E-03
40	GO:0018026: peptidyl-lysine monomethylation	1.10E-03
41	GO:0071497: cellular response to freezing	1.10E-03
42	GO:1900033: negative regulation of trichome patterning	1.10E-03
43	GO:1904143: positive regulation of carotenoid biosynthetic process	1.10E-03
44	GO:0009786: regulation of asymmetric cell division	1.10E-03
45	GO:0006529: asparagine biosynthetic process	1.10E-03
46	GO:2000123: positive regulation of stomatal complex development	1.10E-03
47	GO:0032502: developmental process	1.15E-03
48	GO:0006816: calcium ion transport	1.53E-03
49	GO:0090708: specification of plant organ axis polarity	1.80E-03
50	GO:0071230: cellular response to amino acid stimulus	1.80E-03
51	GO:0031145: anaphase-promoting complex-dependent catabolic process	1.80E-03
52	GO:0071705: nitrogen compound transport	1.80E-03
53	GO:0006760: folic acid-containing compound metabolic process	1.80E-03
54	GO:0007052: mitotic spindle organization	1.80E-03
55	GO:2000012: regulation of auxin polar transport	2.00E-03
56	GO:0009767: photosynthetic electron transport chain	2.00E-03
57	GO:0009742: brassinosteroid mediated signaling pathway	2.34E-03
58	GO:0009658: chloroplast organization	2.46E-03
59	GO:0051639: actin filament network formation	2.61E-03
60	GO:0044211: CTP salvage	2.61E-03
61	GO:0090307: mitotic spindle assembly	2.61E-03
62	GO:0009800: cinnamic acid biosynthetic process	2.61E-03
63	GO:0015696: ammonium transport	2.61E-03
64	GO:0046739: transport of virus in multicellular host	2.61E-03
65	GO:2000904: regulation of starch metabolic process	2.61E-03
66	GO:0051415: interphase microtubule nucleation by interphase microtubule organizing center	2.61E-03
67	GO:0043572: plastid fission	2.61E-03
68	GO:0034508: centromere complex assembly	2.61E-03
69	GO:1902476: chloride transmembrane transport	2.61E-03
70	GO:0007231: osmosensory signaling pathway	2.61E-03
71	GO:0030071: regulation of mitotic metaphase/anaphase transition	2.61E-03
72	GO:0007275: multicellular organism development	2.63E-03
73	GO:0051764: actin crosslink formation	3.52E-03
74	GO:0071249: cellular response to nitrate	3.52E-03
75	GO:0072488: ammonium transmembrane transport	3.52E-03
76	GO:0022622: root system development	3.52E-03
77	GO:0030104: water homeostasis	3.52E-03
78	GO:0033500: carbohydrate homeostasis	3.52E-03
79	GO:0046656: folic acid biosynthetic process	3.52E-03
80	GO:0044206: UMP salvage	3.52E-03
81	GO:1901141: regulation of lignin biosynthetic process	3.52E-03
82	GO:0048629: trichome patterning	3.52E-03
83	GO:0006357: regulation of transcription from RNA polymerase II promoter	3.55E-03
84	GO:0010438: cellular response to sulfur starvation	4.52E-03
85	GO:0010158: abaxial cell fate specification	4.52E-03
86	GO:0030308: negative regulation of cell growth	4.52E-03
87	GO:0010375: stomatal complex patterning	4.52E-03
88	GO:0006544: glycine metabolic process	4.52E-03
89	GO:0009904: chloroplast accumulation movement	4.52E-03
90	GO:1902183: regulation of shoot apical meristem development	4.52E-03
91	GO:0016123: xanthophyll biosynthetic process	4.52E-03
92	GO:0010082: regulation of root meristem growth	4.54E-03
93	GO:0006655: phosphatidylglycerol biosynthetic process	5.60E-03
94	GO:0010315: auxin efflux	5.60E-03
95	GO:0042793: transcription from plastid promoter	5.60E-03
96	GO:0006559: L-phenylalanine catabolic process	5.60E-03
97	GO:0006206: pyrimidine nucleobase metabolic process	5.60E-03
98	GO:0018258: protein O-linked glycosylation via hydroxyproline	5.60E-03
99	GO:0006563: L-serine metabolic process	5.60E-03
100	GO:0010405: arabinogalactan protein metabolic process	5.60E-03
101	GO:0009958: positive gravitropism	6.25E-03
102	GO:0009741: response to brassinosteroid	6.25E-03
103	GO:0009646: response to absence of light	6.73E-03
104	GO:0009942: longitudinal axis specification	6.75E-03
105	GO:1901259: chloroplast rRNA processing	6.75E-03
106	GO:0046654: tetrahydrofolate biosynthetic process	6.75E-03
107	GO:0009903: chloroplast avoidance movement	6.75E-03
108	GO:0030488: tRNA methylation	6.75E-03
109	GO:0080086: stamen filament development	6.75E-03
110	GO:2000037: regulation of stomatal complex patterning	6.75E-03
111	GO:2000067: regulation of root morphogenesis	6.75E-03
112	GO:0010050: vegetative phase change	7.99E-03
113	GO:0048437: floral organ development	7.99E-03
114	GO:0006821: chloride transport	7.99E-03
115	GO:0030307: positive regulation of cell growth	7.99E-03
116	GO:0032880: regulation of protein localization	7.99E-03
117	GO:0009610: response to symbiotic fungus	7.99E-03
118	GO:0005975: carbohydrate metabolic process	8.90E-03
119	GO:0010439: regulation of glucosinolate biosynthetic process	9.31E-03
120	GO:0001522: pseudouridine synthesis	9.31E-03
121	GO:0009850: auxin metabolic process	9.31E-03
122	GO:0042255: ribosome assembly	9.31E-03
123	GO:0048766: root hair initiation	9.31E-03
124	GO:0032875: regulation of DNA endoreduplication	9.31E-03
125	GO:0055075: potassium ion homeostasis	9.31E-03
126	GO:0009827: plant-type cell wall modification	1.07E-02
127	GO:0010497: plasmodesmata-mediated intercellular transport	1.07E-02
128	GO:0009657: plastid organization	1.07E-02
129	GO:0030154: cell differentiation	1.11E-02
130	GO:0009051: pentose-phosphate shunt, oxidative branch	1.22E-02
131	GO:2000024: regulation of leaf development	1.22E-02
132	GO:0000902: cell morphogenesis	1.22E-02
133	GO:0080167: response to karrikin	1.33E-02
134	GO:0009638: phototropism	1.37E-02
135	GO:0035999: tetrahydrofolate interconversion	1.37E-02
136	GO:2000280: regulation of root development	1.37E-02
137	GO:0006535: cysteine biosynthetic process from serine	1.53E-02
138	GO:0048829: root cap development	1.53E-02
139	GO:0009641: shade avoidance	1.53E-02
140	GO:0006949: syncytium formation	1.53E-02
141	GO:0006259: DNA metabolic process	1.53E-02
142	GO:0009790: embryo development	1.67E-02
143	GO:0009773: photosynthetic electron transport in photosystem I	1.69E-02
144	GO:0009682: induced systemic resistance	1.69E-02
145	GO:0006265: DNA topological change	1.69E-02
146	GO:0048229: gametophyte development	1.69E-02
147	GO:0010015: root morphogenesis	1.69E-02
148	GO:0015706: nitrate transport	1.86E-02
149	GO:0016024: CDP-diacylglycerol biosynthetic process	1.86E-02
150	GO:0045037: protein import into chloroplast stroma	1.86E-02
151	GO:0010582: floral meristem determinacy	1.86E-02
152	GO:0008361: regulation of cell size	1.86E-02
153	GO:0009785: blue light signaling pathway	2.04E-02
154	GO:0010628: positive regulation of gene expression	2.04E-02
155	GO:0009691: cytokinin biosynthetic process	2.04E-02
156	GO:0006006: glucose metabolic process	2.04E-02
157	GO:0010075: regulation of meristem growth	2.04E-02
158	GO:0006839: mitochondrial transport	2.13E-02
159	GO:0006541: glutamine metabolic process	2.23E-02
160	GO:0010207: photosystem II assembly	2.23E-02
161	GO:0010020: chloroplast fission	2.23E-02
162	GO:0009934: regulation of meristem structural organization	2.23E-02
163	GO:0009751: response to salicylic acid	2.34E-02
164	GO:0009739: response to gibberellin	2.37E-02
165	GO:0080188: RNA-directed DNA methylation	2.41E-02
166	GO:0010167: response to nitrate	2.41E-02
167	GO:0070588: calcium ion transmembrane transport	2.41E-02
168	GO:0071555: cell wall organization	2.46E-02
169	GO:0006468: protein phosphorylation	2.48E-02
170	GO:0048364: root development	2.55E-02
171	GO:0006071: glycerol metabolic process	2.61E-02
172	GO:0006833: water transport	2.61E-02
173	GO:0009944: polarity specification of adaxial/abaxial axis	2.81E-02
174	GO:0080147: root hair cell development	2.81E-02
175	GO:0051017: actin filament bundle assembly	2.81E-02
176	GO:0005992: trehalose biosynthetic process	2.81E-02
177	GO:0019344: cysteine biosynthetic process	2.81E-02
178	GO:0006418: tRNA aminoacylation for protein translation	3.01E-02
179	GO:0006874: cellular calcium ion homeostasis	3.01E-02
180	GO:0006825: copper ion transport	3.01E-02
181	GO:0051302: regulation of cell division	3.01E-02
182	GO:0016998: cell wall macromolecule catabolic process	3.22E-02
183	GO:0006730: one-carbon metabolic process	3.44E-02
184	GO:0031348: negative regulation of defense response	3.44E-02
185	GO:0019748: secondary metabolic process	3.44E-02
186	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	3.66E-02
187	GO:0009625: response to insect	3.66E-02
188	GO:0006284: base-excision repair	3.88E-02
189	GO:0019722: calcium-mediated signaling	3.88E-02
190	GO:0070417: cellular response to cold	4.11E-02
191	GO:0008284: positive regulation of cell proliferation	4.11E-02
192	GO:0009723: response to ethylene	4.25E-02
193	GO:0048653: anther development	4.34E-02
194	GO:0042631: cellular response to water deprivation	4.34E-02
195	GO:0000226: microtubule cytoskeleton organization	4.34E-02
196	GO:0008033: tRNA processing	4.34E-02
197	GO:0034220: ion transmembrane transport	4.34E-02
198	GO:0010087: phloem or xylem histogenesis	4.34E-02
199	GO:0006662: glycerol ether metabolic process	4.58E-02
200	GO:0007059: chromosome segregation	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
2	GO:0015276: ligand-gated ion channel activity	0.00E+00
3	GO:0009672: auxin:proton symporter activity	7.40E-05
4	GO:0010329: auxin efflux transmembrane transporter activity	1.76E-04
5	GO:0008066: glutamate receptor activity	5.12E-04
6	GO:0005290: L-histidine transmembrane transporter activity	5.12E-04
7	GO:0004008: copper-exporting ATPase activity	5.12E-04
8	GO:0004071: aspartate-ammonia ligase activity	5.12E-04
9	GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity	5.12E-04
10	GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity	5.12E-04
11	GO:0052381: tRNA dimethylallyltransferase activity	5.12E-04
12	GO:0004830: tryptophan-tRNA ligase activity	5.12E-04
13	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.10E-03
14	GO:0008805: carbon-monoxide oxygenase activity	1.10E-03
15	GO:0000064: L-ornithine transmembrane transporter activity	1.10E-03
16	GO:0015929: hexosaminidase activity	1.10E-03
17	GO:0004150: dihydroneopterin aldolase activity	1.10E-03
18	GO:0004563: beta-N-acetylhexosaminidase activity	1.10E-03
19	GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity	1.10E-03
20	GO:0050017: L-3-cyanoalanine synthase activity	1.10E-03
21	GO:0102083: 7,8-dihydromonapterin aldolase activity	1.10E-03
22	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	1.34E-03
23	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	1.66E-03
24	GO:0017150: tRNA dihydrouridine synthase activity	1.80E-03
25	GO:0045548: phenylalanine ammonia-lyase activity	1.80E-03
26	GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity	1.80E-03
27	GO:0004650: polygalacturonase activity	1.86E-03
28	GO:0005262: calcium channel activity	2.00E-03
29	GO:0015181: arginine transmembrane transporter activity	2.61E-03
30	GO:0017172: cysteine dioxygenase activity	2.61E-03
31	GO:0001872: (1->3)-beta-D-glucan binding	2.61E-03
32	GO:0015189: L-lysine transmembrane transporter activity	2.61E-03
33	GO:0004674: protein serine/threonine kinase activity	3.01E-03
34	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.22E-03
35	GO:0016829: lyase activity	3.41E-03
36	GO:0043015: gamma-tubulin binding	3.52E-03
37	GO:0019199: transmembrane receptor protein kinase activity	3.52E-03
38	GO:0005253: anion channel activity	3.52E-03
39	GO:0046556: alpha-L-arabinofuranosidase activity	3.52E-03
40	GO:0016279: protein-lysine N-methyltransferase activity	3.52E-03
41	GO:0004845: uracil phosphoribosyltransferase activity	3.52E-03
42	GO:0004345: glucose-6-phosphate dehydrogenase activity	3.52E-03
43	GO:0004523: RNA-DNA hybrid ribonuclease activity	4.52E-03
44	GO:0004372: glycine hydroxymethyltransferase activity	4.52E-03
45	GO:0008725: DNA-3-methyladenine glycosylase activity	4.52E-03
46	GO:0004871: signal transducer activity	5.36E-03
47	GO:0008519: ammonium transmembrane transporter activity	5.60E-03
48	GO:0005247: voltage-gated chloride channel activity	5.60E-03
49	GO:0004605: phosphatidate cytidylyltransferase activity	5.60E-03
50	GO:1990714: hydroxyproline O-galactosyltransferase activity	5.60E-03
51	GO:0008195: phosphatidate phosphatase activity	6.75E-03
52	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	6.75E-03
53	GO:0004849: uridine kinase activity	6.75E-03
54	GO:0004656: procollagen-proline 4-dioxygenase activity	6.75E-03
55	GO:0004124: cysteine synthase activity	6.75E-03
56	GO:0004518: nuclease activity	8.27E-03
57	GO:0005375: copper ion transmembrane transporter activity	1.07E-02
58	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	1.07E-02
59	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.22E-02
60	GO:0004805: trehalose-phosphatase activity	1.53E-02
61	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.69E-02
62	GO:0003725: double-stranded RNA binding	2.04E-02
63	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.04E-02
64	GO:0004022: alcohol dehydrogenase (NAD) activity	2.04E-02
65	GO:0004089: carbonate dehydratase activity	2.04E-02
66	GO:0031072: heat shock protein binding	2.04E-02
67	GO:0009982: pseudouridine synthase activity	2.04E-02
68	GO:0004672: protein kinase activity	2.08E-02
69	GO:0042393: histone binding	2.13E-02
70	GO:0008083: growth factor activity	2.23E-02
71	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.23E-02
72	GO:0004970: ionotropic glutamate receptor activity	2.41E-02
73	GO:0005217: intracellular ligand-gated ion channel activity	2.41E-02
74	GO:0044212: transcription regulatory region DNA binding	2.46E-02
75	GO:0043621: protein self-association	2.61E-02
76	GO:0031418: L-ascorbic acid binding	2.81E-02
77	GO:0004857: enzyme inhibitor activity	2.81E-02
78	GO:0005215: transporter activity	2.97E-02
79	GO:0005345: purine nucleobase transmembrane transporter activity	3.01E-02
80	GO:0035251: UDP-glucosyltransferase activity	3.22E-02
81	GO:0004176: ATP-dependent peptidase activity	3.22E-02
82	GO:0033612: receptor serine/threonine kinase binding	3.22E-02
83	GO:0043565: sequence-specific DNA binding	3.26E-02
84	GO:0003727: single-stranded RNA binding	3.88E-02
85	GO:0016301: kinase activity	3.88E-02
86	GO:0047134: protein-disulfide reductase activity	4.11E-02
87	GO:0004812: aminoacyl-tRNA ligase activity	4.11E-02
88	GO:0004791: thioredoxin-disulfide reductase activity	4.82E-02