co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G02980

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
2	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
3	GO:0042407: cristae formation	0.00E+00
4	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
5	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
6	GO:0045184: establishment of protein localization	0.00E+00
7	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
8	GO:0031222: arabinan catabolic process	0.00E+00
9	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
10	GO:0042352: GDP-L-fucose salvage	0.00E+00
11	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
12	GO:0061157: mRNA destabilization	0.00E+00
13	GO:0043392: negative regulation of DNA binding	0.00E+00
14	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
15	GO:0017038: protein import	0.00E+00
16	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
17	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
18	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
19	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
20	GO:0001778: plasma membrane repair	0.00E+00
21	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
22	GO:0046620: regulation of organ growth	2.46E-06
23	GO:0018026: peptidyl-lysine monomethylation	2.77E-05
24	GO:0009734: auxin-activated signaling pathway	4.85E-05
25	GO:0009733: response to auxin	7.16E-05
26	GO:0009658: chloroplast organization	1.79E-04
27	GO:0046739: transport of virus in multicellular host	1.81E-04
28	GO:0040008: regulation of growth	2.28E-04
29	GO:0010182: sugar mediated signaling pathway	2.85E-04
30	GO:0005983: starch catabolic process	3.82E-04
31	GO:0009416: response to light stimulus	4.02E-04
32	GO:0010020: chloroplast fission	5.33E-04
33	GO:0042793: transcription from plastid promoter	6.24E-04
34	GO:0010027: thylakoid membrane organization	7.24E-04
35	GO:0009790: embryo development	7.48E-04
36	GO:0016042: lipid catabolic process	7.98E-04
37	GO:0090558: plant epidermis development	8.13E-04
38	GO:0042371: vitamin K biosynthetic process	8.13E-04
39	GO:0043686: co-translational protein modification	8.13E-04
40	GO:2000021: regulation of ion homeostasis	8.13E-04
41	GO:0046520: sphingoid biosynthetic process	8.13E-04
42	GO:0035987: endodermal cell differentiation	8.13E-04
43	GO:0043007: maintenance of rDNA	8.13E-04
44	GO:1902458: positive regulation of stomatal opening	8.13E-04
45	GO:0015904: tetracycline transport	8.13E-04
46	GO:0005991: trehalose metabolic process	8.13E-04
47	GO:0000305: response to oxygen radical	8.13E-04
48	GO:0000023: maltose metabolic process	8.13E-04
49	GO:0042659: regulation of cell fate specification	8.13E-04
50	GO:0000025: maltose catabolic process	8.13E-04
51	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	8.13E-04
52	GO:0043266: regulation of potassium ion transport	8.13E-04
53	GO:0010063: positive regulation of trichoblast fate specification	8.13E-04
54	GO:0010480: microsporocyte differentiation	8.13E-04
55	GO:0005980: glycogen catabolic process	8.13E-04
56	GO:0030198: extracellular matrix organization	8.13E-04
57	GO:0042372: phylloquinone biosynthetic process	8.25E-04
58	GO:0048437: floral organ development	1.05E-03
59	GO:2000070: regulation of response to water deprivation	1.31E-03
60	GO:0010497: plasmodesmata-mediated intercellular transport	1.59E-03
61	GO:0009742: brassinosteroid mediated signaling pathway	1.67E-03
62	GO:1904143: positive regulation of carotenoid biosynthetic process	1.76E-03
63	GO:0080009: mRNA methylation	1.76E-03
64	GO:0009786: regulation of asymmetric cell division	1.76E-03
65	GO:0046740: transport of virus in host, cell to cell	1.76E-03
66	GO:0031648: protein destabilization	1.76E-03
67	GO:0006423: cysteinyl-tRNA aminoacylation	1.76E-03
68	GO:0001682: tRNA 5'-leader removal	1.76E-03
69	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.76E-03
70	GO:0006568: tryptophan metabolic process	1.76E-03
71	GO:2000123: positive regulation of stomatal complex development	1.76E-03
72	GO:0010024: phytochromobilin biosynthetic process	1.76E-03
73	GO:0009629: response to gravity	1.76E-03
74	GO:1900871: chloroplast mRNA modification	1.76E-03
75	GO:0006432: phenylalanyl-tRNA aminoacylation	1.76E-03
76	GO:0007154: cell communication	1.76E-03
77	GO:0071497: cellular response to freezing	1.76E-03
78	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.76E-03
79	GO:1900033: negative regulation of trichome patterning	1.76E-03
80	GO:0010305: leaf vascular tissue pattern formation	1.97E-03
81	GO:0009741: response to brassinosteroid	1.97E-03
82	GO:0006662: glycerol ether metabolic process	1.97E-03
83	GO:0009098: leucine biosynthetic process	2.27E-03
84	GO:1900865: chloroplast RNA modification	2.27E-03
85	GO:0048829: root cap development	2.66E-03
86	GO:0009793: embryo development ending in seed dormancy	2.67E-03
87	GO:0032502: developmental process	2.82E-03
88	GO:0010583: response to cyclopentenone	2.82E-03
89	GO:0006788: heme oxidation	2.91E-03
90	GO:0071398: cellular response to fatty acid	2.91E-03
91	GO:0033591: response to L-ascorbic acid	2.91E-03
92	GO:0090708: specification of plant organ axis polarity	2.91E-03
93	GO:0009773: photosynthetic electron transport in photosystem I	3.08E-03
94	GO:0009682: induced systemic resistance	3.08E-03
95	GO:0010102: lateral root morphogenesis	4.03E-03
96	GO:0010588: cotyledon vascular tissue pattern formation	4.03E-03
97	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.11E-03
98	GO:0009451: RNA modification	4.14E-03
99	GO:0043572: plastid fission	4.25E-03
100	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	4.25E-03
101	GO:0090308: regulation of methylation-dependent chromatin silencing	4.25E-03
102	GO:0031048: chromatin silencing by small RNA	4.25E-03
103	GO:0010321: regulation of vegetative phase change	4.25E-03
104	GO:1990019: protein storage vacuole organization	4.25E-03
105	GO:0016556: mRNA modification	4.25E-03
106	GO:0010371: regulation of gibberellin biosynthetic process	4.25E-03
107	GO:0010071: root meristem specification	4.25E-03
108	GO:0009102: biotin biosynthetic process	4.25E-03
109	GO:0010306: rhamnogalacturonan II biosynthetic process	4.25E-03
110	GO:0032456: endocytic recycling	4.25E-03
111	GO:0006612: protein targeting to membrane	4.25E-03
112	GO:0010239: chloroplast mRNA processing	4.25E-03
113	GO:0019048: modulation by virus of host morphology or physiology	4.25E-03
114	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	4.25E-03
115	GO:0015995: chlorophyll biosynthetic process	5.15E-03
116	GO:0045454: cell redox homeostasis	5.49E-03
117	GO:0051567: histone H3-K9 methylation	5.75E-03
118	GO:0009755: hormone-mediated signaling pathway	5.75E-03
119	GO:0006749: glutathione metabolic process	5.75E-03
120	GO:1901141: regulation of lignin biosynthetic process	5.75E-03
121	GO:0048629: trichome patterning	5.75E-03
122	GO:0010109: regulation of photosynthesis	5.75E-03
123	GO:0042274: ribosomal small subunit biogenesis	5.75E-03
124	GO:0030104: water homeostasis	5.75E-03
125	GO:2000038: regulation of stomatal complex development	5.75E-03
126	GO:0006221: pyrimidine nucleotide biosynthetic process	5.75E-03
127	GO:0005992: trehalose biosynthetic process	6.35E-03
128	GO:0045038: protein import into chloroplast thylakoid membrane	7.40E-03
129	GO:0031365: N-terminal protein amino acid modification	7.40E-03
130	GO:0016123: xanthophyll biosynthetic process	7.40E-03
131	GO:0016131: brassinosteroid metabolic process	7.40E-03
132	GO:0010438: cellular response to sulfur starvation	7.40E-03
133	GO:0010375: stomatal complex patterning	7.40E-03
134	GO:0032543: mitochondrial translation	7.40E-03
135	GO:0010236: plastoquinone biosynthetic process	7.40E-03
136	GO:0006865: amino acid transport	7.51E-03
137	GO:0034599: cellular response to oxidative stress	8.43E-03
138	GO:0018258: protein O-linked glycosylation via hydroxyproline	9.20E-03
139	GO:0000741: karyogamy	9.20E-03
140	GO:0010405: arabinogalactan protein metabolic process	9.20E-03
141	GO:0009959: negative gravitropism	9.20E-03
142	GO:1902456: regulation of stomatal opening	9.20E-03
143	GO:0048831: regulation of shoot system development	9.20E-03
144	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	9.20E-03
145	GO:0016554: cytidine to uridine editing	9.20E-03
146	GO:0016458: gene silencing	9.20E-03
147	GO:0009926: auxin polar transport	1.10E-02
148	GO:0009640: photomorphogenesis	1.10E-02
149	GO:0009099: valine biosynthetic process	1.11E-02
150	GO:0030488: tRNA methylation	1.11E-02
151	GO:0042026: protein refolding	1.11E-02
152	GO:2000033: regulation of seed dormancy process	1.11E-02
153	GO:1901259: chloroplast rRNA processing	1.11E-02
154	GO:0031930: mitochondria-nucleus signaling pathway	1.11E-02
155	GO:0080086: stamen filament development	1.11E-02
156	GO:2000067: regulation of root morphogenesis	1.11E-02
157	GO:0009612: response to mechanical stimulus	1.11E-02
158	GO:0009082: branched-chain amino acid biosynthetic process	1.11E-02
159	GO:0006458: 'de novo' protein folding	1.11E-02
160	GO:0017148: negative regulation of translation	1.11E-02
161	GO:0048280: vesicle fusion with Golgi apparatus	1.11E-02
162	GO:0048509: regulation of meristem development	1.11E-02
163	GO:0008033: tRNA processing	1.19E-02
164	GO:0010197: polar nucleus fusion	1.28E-02
165	GO:0030307: positive regulation of cell growth	1.32E-02
166	GO:0010161: red light signaling pathway	1.32E-02
167	GO:0006955: immune response	1.32E-02
168	GO:0009772: photosynthetic electron transport in photosystem II	1.32E-02
169	GO:0010098: suspensor development	1.32E-02
170	GO:0030497: fatty acid elongation	1.32E-02
171	GO:0010444: guard mother cell differentiation	1.32E-02
172	GO:0006855: drug transmembrane transport	1.35E-02
173	GO:0009646: response to absence of light	1.38E-02
174	GO:0055075: potassium ion homeostasis	1.54E-02
175	GO:0070413: trehalose metabolism in response to stress	1.54E-02
176	GO:0000105: histidine biosynthetic process	1.54E-02
177	GO:0010439: regulation of glucosinolate biosynthetic process	1.54E-02
178	GO:0009690: cytokinin metabolic process	1.54E-02
179	GO:0006605: protein targeting	1.54E-02
180	GO:0009704: de-etiolation	1.54E-02
181	GO:0009819: drought recovery	1.54E-02
182	GO:0016032: viral process	1.70E-02
183	GO:0006857: oligopeptide transport	1.77E-02
184	GO:0009657: plastid organization	1.78E-02
185	GO:0007166: cell surface receptor signaling pathway	1.78E-02
186	GO:0010099: regulation of photomorphogenesis	1.78E-02
187	GO:0015996: chlorophyll catabolic process	1.78E-02
188	GO:0009097: isoleucine biosynthetic process	1.78E-02
189	GO:0010100: negative regulation of photomorphogenesis	1.78E-02
190	GO:0007186: G-protein coupled receptor signaling pathway	1.78E-02
191	GO:0032544: plastid translation	1.78E-02
192	GO:1901657: glycosyl compound metabolic process	1.81E-02
193	GO:0000373: Group II intron splicing	2.02E-02
194	GO:0048507: meristem development	2.02E-02
195	GO:0000902: cell morphogenesis	2.02E-02
196	GO:0051865: protein autoubiquitination	2.02E-02
197	GO:0046685: response to arsenic-containing substance	2.02E-02
198	GO:0010206: photosystem II repair	2.02E-02
199	GO:0046916: cellular transition metal ion homeostasis	2.02E-02
200	GO:0006783: heme biosynthetic process	2.02E-02
201	GO:0048367: shoot system development	2.09E-02
202	GO:0051607: defense response to virus	2.17E-02
203	GO:2000280: regulation of root development	2.28E-02
204	GO:0009638: phototropism	2.28E-02
205	GO:0043067: regulation of programmed cell death	2.28E-02
206	GO:0030422: production of siRNA involved in RNA interference	2.54E-02
207	GO:0009641: shade avoidance	2.54E-02
208	GO:0016441: posttranscriptional gene silencing	2.54E-02
209	GO:0009299: mRNA transcription	2.54E-02
210	GO:0010162: seed dormancy process	2.54E-02
211	GO:0006896: Golgi to vacuole transport	2.54E-02
212	GO:0048229: gametophyte development	2.82E-02
213	GO:0010216: maintenance of DNA methylation	2.82E-02
214	GO:0010015: root morphogenesis	2.82E-02
215	GO:0009073: aromatic amino acid family biosynthetic process	2.82E-02
216	GO:0043085: positive regulation of catalytic activity	2.82E-02
217	GO:0000272: polysaccharide catabolic process	2.82E-02
218	GO:0045037: protein import into chloroplast stroma	3.10E-02
219	GO:0006820: anion transport	3.10E-02
220	GO:0010105: negative regulation of ethylene-activated signaling pathway	3.10E-02
221	GO:0050826: response to freezing	3.40E-02
222	GO:0009691: cytokinin biosynthetic process	3.40E-02
223	GO:0009718: anthocyanin-containing compound biosynthetic process	3.40E-02
224	GO:0010075: regulation of meristem growth	3.40E-02
225	GO:0009725: response to hormone	3.40E-02
226	GO:0009767: photosynthetic electron transport chain	3.40E-02
227	GO:0010628: positive regulation of gene expression	3.40E-02
228	GO:2000012: regulation of auxin polar transport	3.40E-02
229	GO:0006006: glucose metabolic process	3.40E-02
230	GO:0009266: response to temperature stimulus	3.71E-02
231	GO:0009934: regulation of meristem structural organization	3.71E-02
232	GO:0010207: photosystem II assembly	3.71E-02
233	GO:0007275: multicellular organism development	3.76E-02
234	GO:0090351: seedling development	4.02E-02
235	GO:0010030: positive regulation of seed germination	4.02E-02
236	GO:0019853: L-ascorbic acid biosynthetic process	4.02E-02
237	GO:0006457: protein folding	4.02E-02
238	GO:0080188: RNA-directed DNA methylation	4.02E-02
239	GO:0006071: glycerol metabolic process	4.34E-02
240	GO:0006833: water transport	4.34E-02
241	GO:0019762: glucosinolate catabolic process	4.34E-02
242	GO:0030001: metal ion transport	4.34E-02
243	GO:0000162: tryptophan biosynthetic process	4.34E-02
244	GO:0006631: fatty acid metabolic process	4.52E-02
245	GO:0010187: negative regulation of seed germination	4.68E-02
246	GO:0080147: root hair cell development	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
2	GO:0015267: channel activity	0.00E+00
3	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
4	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
5	GO:0005201: extracellular matrix structural constituent	0.00E+00
6	GO:0047341: fucose-1-phosphate guanylyltransferase activity	0.00E+00
7	GO:0004076: biotin synthase activity	0.00E+00
8	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
9	GO:0071633: dihydroceramidase activity	0.00E+00
10	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
11	GO:0005363: maltose transmembrane transporter activity	0.00E+00
12	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
13	GO:0050201: fucokinase activity	0.00E+00
14	GO:0004823: leucine-tRNA ligase activity	0.00E+00
15	GO:0047661: amino-acid racemase activity	0.00E+00
16	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
17	GO:0016279: protein-lysine N-methyltransferase activity	3.02E-04
18	GO:0042586: peptide deformylase activity	8.13E-04
19	GO:0052381: tRNA dimethylallyltransferase activity	8.13E-04
20	GO:0010313: phytochrome binding	8.13E-04
21	GO:0000170: sphingosine hydroxylase activity	8.13E-04
22	GO:0050139: nicotinate-N-glucosyltransferase activity	8.13E-04
23	GO:0004425: indole-3-glycerol-phosphate synthase activity	8.13E-04
24	GO:0004856: xylulokinase activity	8.13E-04
25	GO:0004134: 4-alpha-glucanotransferase activity	8.13E-04
26	GO:0004645: phosphorylase activity	8.13E-04
27	GO:0008184: glycogen phosphorylase activity	8.13E-04
28	GO:0019203: carbohydrate phosphatase activity	8.13E-04
29	GO:0042834: peptidoglycan binding	8.13E-04
30	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	8.13E-04
31	GO:0008395: steroid hydroxylase activity	8.13E-04
32	GO:0080042: ADP-glucose pyrophosphohydrolase activity	8.13E-04
33	GO:0005080: protein kinase C binding	8.13E-04
34	GO:0050308: sugar-phosphatase activity	8.13E-04
35	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	8.13E-04
36	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	8.13E-04
37	GO:0004176: ATP-dependent peptidase activity	1.04E-03
38	GO:0047134: protein-disulfide reductase activity	1.62E-03
39	GO:0008493: tetracycline transporter activity	1.76E-03
40	GO:0004826: phenylalanine-tRNA ligase activity	1.76E-03
41	GO:0017118: lipoyltransferase activity	1.76E-03
42	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.76E-03
43	GO:0004362: glutathione-disulfide reductase activity	1.76E-03
44	GO:1901981: phosphatidylinositol phosphate binding	1.76E-03
45	GO:0003852: 2-isopropylmalate synthase activity	1.76E-03
46	GO:0080041: ADP-ribose pyrophosphohydrolase activity	1.76E-03
47	GO:0043425: bHLH transcription factor binding	1.76E-03
48	GO:0004817: cysteine-tRNA ligase activity	1.76E-03
49	GO:0008805: carbon-monoxide oxygenase activity	1.76E-03
50	GO:0042284: sphingolipid delta-4 desaturase activity	1.76E-03
51	GO:0004791: thioredoxin-disulfide reductase activity	2.17E-03
52	GO:0016788: hydrolase activity, acting on ester bonds	2.60E-03
53	GO:0002161: aminoacyl-tRNA editing activity	2.91E-03
54	GO:0016805: dipeptidase activity	2.91E-03
55	GO:0004148: dihydrolipoyl dehydrogenase activity	2.91E-03
56	GO:0015462: ATPase-coupled protein transmembrane transporter activity	2.91E-03
57	GO:0004180: carboxypeptidase activity	2.91E-03
58	GO:0003913: DNA photolyase activity	2.91E-03
59	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.06E-03
60	GO:0008237: metallopeptidase activity	3.59E-03
61	GO:0016298: lipase activity	3.88E-03
62	GO:0031072: heat shock protein binding	4.03E-03
63	GO:0009041: uridylate kinase activity	4.25E-03
64	GO:0043023: ribosomal large subunit binding	4.25E-03
65	GO:0052654: L-leucine transaminase activity	4.25E-03
66	GO:0035197: siRNA binding	4.25E-03
67	GO:0016851: magnesium chelatase activity	4.25E-03
68	GO:0052655: L-valine transaminase activity	4.25E-03
69	GO:0001872: (1->3)-beta-D-glucan binding	4.25E-03
70	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	4.25E-03
71	GO:0052656: L-isoleucine transaminase activity	4.25E-03
72	GO:0052689: carboxylic ester hydrolase activity	4.68E-03
73	GO:0019199: transmembrane receptor protein kinase activity	5.75E-03
74	GO:0046556: alpha-L-arabinofuranosidase activity	5.75E-03
75	GO:0004335: galactokinase activity	5.75E-03
76	GO:0004659: prenyltransferase activity	5.75E-03
77	GO:0004392: heme oxygenase (decyclizing) activity	5.75E-03
78	GO:0004084: branched-chain-amino-acid transaminase activity	5.75E-03
79	GO:0015238: drug transmembrane transporter activity	6.26E-03
80	GO:0005528: FK506 binding	6.35E-03
81	GO:0015035: protein disulfide oxidoreductase activity	6.61E-03
82	GO:0004222: metalloendopeptidase activity	6.66E-03
83	GO:0016773: phosphotransferase activity, alcohol group as acceptor	7.40E-03
84	GO:0003968: RNA-directed 5'-3' RNA polymerase activity	9.20E-03
85	GO:0035673: oligopeptide transmembrane transporter activity	9.20E-03
86	GO:0102229: amylopectin maltohydrolase activity	9.20E-03
87	GO:2001070: starch binding	9.20E-03
88	GO:0080030: methyl indole-3-acetate esterase activity	9.20E-03
89	GO:1990714: hydroxyproline O-galactosyltransferase activity	9.20E-03
90	GO:0004526: ribonuclease P activity	9.20E-03
91	GO:0004709: MAP kinase kinase kinase activity	9.20E-03
92	GO:0016208: AMP binding	9.20E-03
93	GO:0005215: transporter activity	9.38E-03
94	GO:0004519: endonuclease activity	9.76E-03
95	GO:0003727: single-stranded RNA binding	1.01E-02
96	GO:0016161: beta-amylase activity	1.11E-02
97	GO:0008195: phosphatidate phosphatase activity	1.11E-02
98	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.11E-02
99	GO:0016832: aldehyde-lyase activity	1.11E-02
100	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.11E-02
101	GO:0043621: protein self-association	1.22E-02
102	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	1.31E-02
103	GO:0004033: aldo-keto reductase (NADP) activity	1.54E-02
104	GO:0046914: transition metal ion binding	1.78E-02
105	GO:0008173: RNA methyltransferase activity	1.78E-02
106	GO:0015171: amino acid transmembrane transporter activity	1.84E-02
107	GO:0004871: signal transducer activity	1.85E-02
108	GO:0003723: RNA binding	1.90E-02
109	GO:0005524: ATP binding	2.01E-02
110	GO:0071949: FAD binding	2.02E-02
111	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	2.02E-02
112	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	2.02E-02
113	GO:0008889: glycerophosphodiester phosphodiesterase activity	2.02E-02
114	GO:0016787: hydrolase activity	2.23E-02
115	GO:0051082: unfolded protein binding	2.53E-02
116	GO:0004805: trehalose-phosphatase activity	2.54E-02
117	GO:0030234: enzyme regulator activity	2.54E-02
118	GO:0008047: enzyme activator activity	2.54E-02
119	GO:0015020: glucuronosyltransferase activity	2.54E-02
120	GO:0102483: scopolin beta-glucosidase activity	2.72E-02
121	GO:0008559: xenobiotic-transporting ATPase activity	2.82E-02
122	GO:0044183: protein binding involved in protein folding	2.82E-02
123	GO:0000049: tRNA binding	3.10E-02
124	GO:0015198: oligopeptide transporter activity	3.10E-02
125	GO:0004521: endoribonuclease activity	3.10E-02
126	GO:0004089: carbonate dehydratase activity	3.40E-02
127	GO:0009982: pseudouridine synthase activity	3.40E-02
128	GO:0050660: flavin adenine dinucleotide binding	3.47E-02
129	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.48E-02
130	GO:0008266: poly(U) RNA binding	3.71E-02
131	GO:0003993: acid phosphatase activity	3.99E-02
132	GO:0008146: sulfotransferase activity	4.02E-02
133	GO:0000149: SNARE binding	4.16E-02
134	GO:0008422: beta-glucosidase activity	4.16E-02
135	GO:0031418: L-ascorbic acid binding	4.68E-02
136	GO:0015297: antiporter activity	4.71E-02
137	GO:0003824: catalytic activity	4.87E-02
138	GO:0005484: SNAP receptor activity	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0009507: chloroplast	1.44E-14
3	GO:0009570: chloroplast stroma	5.89E-10
4	GO:0009508: plastid chromosome	1.22E-06
5	GO:0009295: nucleoid	6.40E-06
6	GO:0032541: cortical endoplasmic reticulum	8.13E-04
7	GO:0009501: amyloplast	1.31E-03
8	GO:0009706: chloroplast inner membrane	1.50E-03
9	GO:0009941: chloroplast envelope	1.52E-03
10	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.76E-03
11	GO:0031357: integral component of chloroplast inner membrane	1.76E-03
12	GO:0009534: chloroplast thylakoid	1.94E-03
13	GO:0030139: endocytic vesicle	2.91E-03
14	GO:0009528: plastid inner membrane	2.91E-03
15	GO:0019897: extrinsic component of plasma membrane	2.91E-03
16	GO:0010007: magnesium chelatase complex	2.91E-03
17	GO:0032585: multivesicular body membrane	4.25E-03
18	GO:0005719: nuclear euchromatin	4.25E-03
19	GO:0009536: plastid	5.10E-03
20	GO:0009535: chloroplast thylakoid membrane	5.38E-03
21	GO:0005886: plasma membrane	5.65E-03
22	GO:0009544: chloroplast ATP synthase complex	5.75E-03
23	GO:0009527: plastid outer membrane	5.75E-03
24	GO:0009898: cytoplasmic side of plasma membrane	5.75E-03
25	GO:0009654: photosystem II oxygen evolving complex	7.02E-03
26	GO:0009543: chloroplast thylakoid lumen	8.92E-03
27	GO:0043231: intracellular membrane-bounded organelle	1.00E-02
28	GO:0005655: nucleolar ribonuclease P complex	1.11E-02
29	GO:0031969: chloroplast membrane	1.25E-02
30	GO:0009986: cell surface	1.32E-02
31	GO:0019898: extrinsic component of membrane	1.48E-02
32	GO:0048226: Casparian strip	1.54E-02
33	GO:0012507: ER to Golgi transport vesicle membrane	1.54E-02
34	GO:0005720: nuclear heterochromatin	2.02E-02
35	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.02E-02
36	GO:0015030: Cajal body	2.28E-02
37	GO:0030529: intracellular ribonucleoprotein complex	2.30E-02
38	GO:0000418: DNA-directed RNA polymerase IV complex	2.54E-02
39	GO:0009707: chloroplast outer membrane	3.01E-02
40	GO:0005578: proteinaceous extracellular matrix	3.40E-02
41	GO:0030095: chloroplast photosystem II	3.71E-02
42	GO:0031201: SNARE complex	4.52E-02
43	GO:0031902: late endosome membrane	4.52E-02
44	GO:0031977: thylakoid lumen	4.52E-02
45	GO:0016021: integral component of membrane	4.94E-02