gene detail

Gene description

TAIR ID: AT1G77630

Short description: Peptidoglycan-binding LysM domain-containing protein

Pathogen responsiveness: -0.76

General responsiveness: -0.86

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

defense response, cell wall macromolecule catabolic process, immune response

GO cellular component

plasma membrane, anchored component of membrane, anchored component of plasma membrane

GO molecular function

unkown

Protein domain

Pfam	PF01476, LysM domain
SMART	SM00257, LysM

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790, AT5G22220, AT1G24260, AT5G61850

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

12 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-1.76	8.50E-06
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-2.03	1.19E-06
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.70	8.73E-06
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-1.83	1.49E-10
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	-1.54	4.07E-06
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-2.12	5.91E-04
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.98	3.21E-15
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	-1.53	4.99E-13
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-2.01	3.99E-15
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-1.61	3.93E-14
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-2.18	4.93E-05
GSE5520	Col, WT, control 24 h	Col, WT, PstDC3000 24 h	-1.97	4.07E-04