Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G77630

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0010081: regulation of inflorescence meristem growth0.00E+00
2GO:0045176: apical protein localization0.00E+00
3GO:0009583: detection of light stimulus0.00E+00
4GO:0071000: response to magnetism0.00E+00
5GO:0007037: vacuolar phosphate transport0.00E+00
6GO:0010068: protoderm histogenesis0.00E+00
7GO:0080127: fruit septum development0.00E+00
8GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
9GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
10GO:1905177: tracheary element differentiation0.00E+00
11GO:0046620: regulation of organ growth3.50E-05
12GO:0000373: Group II intron splicing6.63E-05
13GO:1900865: chloroplast RNA modification8.70E-05
14GO:0045037: protein import into chloroplast stroma1.70E-04
15GO:0010582: floral meristem determinacy1.70E-04
16GO:0045038: protein import into chloroplast thylakoid membrane2.46E-04
17GO:0016554: cytidine to uridine editing3.46E-04
18GO:2000021: regulation of ion homeostasis5.49E-04
19GO:0043609: regulation of carbon utilization5.49E-04
20GO:0006436: tryptophanyl-tRNA aminoacylation5.49E-04
21GO:0051247: positive regulation of protein metabolic process5.49E-04
22GO:0000066: mitochondrial ornithine transport5.49E-04
23GO:1902458: positive regulation of stomatal opening5.49E-04
24GO:0015904: tetracycline transport5.49E-04
25GO:2000905: negative regulation of starch metabolic process5.49E-04
26GO:0034757: negative regulation of iron ion transport5.49E-04
27GO:0006419: alanyl-tRNA aminoacylation5.49E-04
28GO:0043266: regulation of potassium ion transport5.49E-04
29GO:0010080: regulation of floral meristem growth5.49E-04
30GO:0072387: flavin adenine dinucleotide metabolic process5.49E-04
31GO:0043087: regulation of GTPase activity5.49E-04
32GO:0048564: photosystem I assembly7.35E-04
33GO:0009657: plastid organization8.95E-04
34GO:0009926: auxin polar transport9.31E-04
35GO:0009786: regulation of asymmetric cell division1.18E-03
36GO:1903426: regulation of reactive oxygen species biosynthetic process1.18E-03
37GO:0010024: phytochromobilin biosynthetic process1.18E-03
38GO:0010343: singlet oxygen-mediated programmed cell death1.18E-03
39GO:1901529: positive regulation of anion channel activity1.18E-03
40GO:1905011: transmembrane phosphate ion transport from cytosol to vacuole1.18E-03
41GO:0060359: response to ammonium ion1.18E-03
42GO:0048255: mRNA stabilization1.18E-03
43GO:0010617: circadian regulation of calcium ion oscillation1.18E-03
44GO:0010271: regulation of chlorophyll catabolic process1.18E-03
45GO:0099402: plant organ development1.18E-03
46GO:0001736: establishment of planar polarity1.18E-03
47GO:0080009: mRNA methylation1.18E-03
48GO:0048829: root cap development1.47E-03
49GO:0043157: response to cation stress1.94E-03
50GO:0071398: cellular response to fatty acid1.94E-03
51GO:2001295: malonyl-CoA biosynthetic process1.94E-03
52GO:1902448: positive regulation of shade avoidance1.94E-03
53GO:0080117: secondary growth1.94E-03
54GO:0048586: regulation of long-day photoperiodism, flowering1.94E-03
55GO:0006000: fructose metabolic process1.94E-03
56GO:0006788: heme oxidation1.94E-03
57GO:0010623: programmed cell death involved in cell development1.94E-03
58GO:0010022: meristem determinacy1.94E-03
59GO:1901672: positive regulation of systemic acquired resistance1.94E-03
60GO:0090153: regulation of sphingolipid biosynthetic process1.94E-03
61GO:0009725: response to hormone2.22E-03
62GO:0006094: gluconeogenesis2.22E-03
63GO:0010207: photosystem II assembly2.50E-03
64GO:0010371: regulation of gibberellin biosynthetic process2.81E-03
65GO:0051513: regulation of monopolar cell growth2.81E-03
66GO:0051639: actin filament network formation2.81E-03
67GO:0034059: response to anoxia2.81E-03
68GO:0009800: cinnamic acid biosynthetic process2.81E-03
69GO:0044211: CTP salvage2.81E-03
70GO:0019048: modulation by virus of host morphology or physiology2.81E-03
71GO:0048645: animal organ formation2.81E-03
72GO:1901332: negative regulation of lateral root development2.81E-03
73GO:2000904: regulation of starch metabolic process2.81E-03
74GO:0031048: chromatin silencing by small RNA2.81E-03
75GO:1990019: protein storage vacuole organization2.81E-03
76GO:0016556: mRNA modification2.81E-03
77GO:0005992: trehalose biosynthetic process3.48E-03
78GO:0051017: actin filament bundle assembly3.48E-03
79GO:0051764: actin crosslink formation3.79E-03
80GO:2000306: positive regulation of photomorphogenesis3.79E-03
81GO:0051567: histone H3-K9 methylation3.79E-03
82GO:0010508: positive regulation of autophagy3.79E-03
83GO:1902347: response to strigolactone3.79E-03
84GO:0008295: spermidine biosynthetic process3.79E-03
85GO:0044206: UMP salvage3.79E-03
86GO:0010431: seed maturation4.23E-03
87GO:0016123: xanthophyll biosynthetic process4.86E-03
88GO:0010158: abaxial cell fate specification4.86E-03
89GO:0080110: sporopollenin biosynthetic process4.86E-03
90GO:0010117: photoprotection4.86E-03
91GO:0046283: anthocyanin-containing compound metabolic process4.86E-03
92GO:0048497: maintenance of floral organ identity4.86E-03
93GO:0009831: plant-type cell wall modification involved in multidimensional cell growth5.05E-03
94GO:0009733: response to auxin5.65E-03
95GO:0009636: response to toxic substance5.93E-03
96GO:0048827: phyllome development6.02E-03
97GO:0009959: negative gravitropism6.02E-03
98GO:0006555: methionine metabolic process6.02E-03
99GO:0009913: epidermal cell differentiation6.02E-03
100GO:0060918: auxin transport6.02E-03
101GO:0010358: leaf shaping6.02E-03
102GO:1902456: regulation of stomatal opening6.02E-03
103GO:0048831: regulation of shoot system development6.02E-03
104GO:0010190: cytochrome b6f complex assembly6.02E-03
105GO:0009920: cell plate formation involved in plant-type cell wall biogenesis6.02E-03
106GO:0003006: developmental process involved in reproduction6.02E-03
107GO:1901371: regulation of leaf morphogenesis6.02E-03
108GO:0006559: L-phenylalanine catabolic process6.02E-03
109GO:0006206: pyrimidine nucleobase metabolic process6.02E-03
110GO:0016458: gene silencing6.02E-03
111GO:0010087: phloem or xylem histogenesis6.45E-03
112GO:0010118: stomatal movement6.45E-03
113GO:0010182: sugar mediated signaling pathway6.96E-03
114GO:0009958: positive gravitropism6.96E-03
115GO:0007166: cell surface receptor signaling pathway7.14E-03
116GO:0009648: photoperiodism7.28E-03
117GO:0010310: regulation of hydrogen peroxide metabolic process7.28E-03
118GO:0042372: phylloquinone biosynthetic process7.28E-03
119GO:0010244: response to low fluence blue light stimulus by blue low-fluence system7.28E-03
120GO:0048509: regulation of meristem development7.28E-03
121GO:0030488: tRNA methylation7.28E-03
122GO:0009416: response to light stimulus7.80E-03
123GO:0048825: cotyledon development8.04E-03
124GO:0010098: suspensor development8.61E-03
125GO:0010050: vegetative phase change8.61E-03
126GO:0006400: tRNA modification8.61E-03
127GO:0051510: regulation of unidimensional cell growth8.61E-03
128GO:0010583: response to cyclopentenone9.21E-03
129GO:0000105: histidine biosynthetic process1.00E-02
130GO:0009850: auxin metabolic process1.00E-02
131GO:0009690: cytokinin metabolic process1.00E-02
132GO:2000070: regulation of response to water deprivation1.00E-02
133GO:0045010: actin nucleation1.00E-02
134GO:0009828: plant-type cell wall loosening1.05E-02
135GO:0009826: unidimensional cell growth1.07E-02
136GO:0006002: fructose 6-phosphate metabolic process1.15E-02
137GO:0015996: chlorophyll catabolic process1.15E-02
138GO:0007186: G-protein coupled receptor signaling pathway1.15E-02
139GO:0010497: plasmodesmata-mediated intercellular transport1.15E-02
140GO:0051607: defense response to virus1.18E-02
141GO:0009911: positive regulation of flower development1.25E-02
142GO:0010027: thylakoid membrane organization1.25E-02
143GO:0009056: catabolic process1.31E-02
144GO:0090305: nucleic acid phosphodiester bond hydrolysis1.31E-02
145GO:0006098: pentose-phosphate shunt1.31E-02
146GO:0046916: cellular transition metal ion homeostasis1.31E-02
147GO:0048507: meristem development1.31E-02
148GO:0010029: regulation of seed germination1.32E-02
149GO:1900426: positive regulation of defense response to bacterium1.48E-02
150GO:0009638: phototropism1.48E-02
151GO:0035999: tetrahydrofolate interconversion1.48E-02
152GO:0010018: far-red light signaling pathway1.48E-02
153GO:0009086: methionine biosynthetic process1.48E-02
154GO:0010411: xyloglucan metabolic process1.48E-02
155GO:0031425: chloroplast RNA processing1.48E-02
156GO:0009734: auxin-activated signaling pathway1.56E-02
157GO:0018298: protein-chromophore linkage1.64E-02
158GO:0016441: posttranscriptional gene silencing1.65E-02
159GO:0006949: syncytium formation1.65E-02
160GO:0031627: telomeric loop formation1.65E-02
161GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.65E-02
162GO:0009299: mRNA transcription1.65E-02
163GO:0006535: cysteine biosynthetic process from serine1.65E-02
164GO:0030422: production of siRNA involved in RNA interference1.65E-02
165GO:0000160: phosphorelay signal transduction system1.72E-02
166GO:0010311: lateral root formation1.72E-02
167GO:0048765: root hair cell differentiation1.83E-02
168GO:0006415: translational termination1.83E-02
169GO:0007568: aging1.90E-02
170GO:0006865: amino acid transport1.99E-02
171GO:0010229: inflorescence development2.20E-02
172GO:0030036: actin cytoskeleton organization2.20E-02
173GO:0010075: regulation of meristem growth2.20E-02
174GO:0010588: cotyledon vascular tissue pattern formation2.20E-02
175GO:0030048: actin filament-based movement2.20E-02
176GO:0009785: blue light signaling pathway2.20E-02
177GO:0040008: regulation of growth2.22E-02
178GO:0006839: mitochondrial transport2.37E-02
179GO:0010540: basipetal auxin transport2.40E-02
180GO:0048467: gynoecium development2.40E-02
181GO:0010020: chloroplast fission2.40E-02
182GO:0006631: fatty acid metabolic process2.48E-02
183GO:0042546: cell wall biogenesis2.80E-02
184GO:0042753: positive regulation of circadian rhythm2.82E-02
185GO:0009644: response to high light intensity2.91E-02
186GO:0009793: embryo development ending in seed dormancy2.95E-02
187GO:0071555: cell wall organization3.01E-02
188GO:0019344: cysteine biosynthetic process3.03E-02
189GO:0030150: protein import into mitochondrial matrix3.03E-02
190GO:2000377: regulation of reactive oxygen species metabolic process3.03E-02
191GO:0006418: tRNA aminoacylation for protein translation3.25E-02
192GO:0009664: plant-type cell wall organization3.37E-02
193GO:0006306: DNA methylation3.48E-02
194GO:0003333: amino acid transmembrane transport3.48E-02
195GO:0009736: cytokinin-activated signaling pathway3.62E-02
196GO:0030245: cellulose catabolic process3.71E-02
197GO:0035428: hexose transmembrane transport3.71E-02
198GO:0006730: one-carbon metabolic process3.71E-02
199GO:0010082: regulation of root meristem growth3.95E-02
200GO:0009693: ethylene biosynthetic process3.95E-02
201GO:0071215: cellular response to abscisic acid stimulus3.95E-02
202GO:0009909: regulation of flower development4.00E-02
203GO:0009658: chloroplast organization4.06E-02
204GO:0010089: xylem development4.19E-02
205GO:0010584: pollen exine formation4.19E-02
206GO:0006284: base-excision repair4.19E-02
207GO:0019722: calcium-mediated signaling4.19E-02
208GO:0006096: glycolytic process4.27E-02
209GO:0048367: shoot system development4.41E-02
210GO:0048316: seed development4.41E-02
211GO:0070417: cellular response to cold4.44E-02
212GO:0080022: primary root development4.69E-02
213GO:0042335: cuticle development4.69E-02
214GO:0010501: RNA secondary structure unwinding4.69E-02
215GO:0009740: gibberellic acid mediated signaling pathway4.83E-02
216GO:0048868: pollen tube development4.94E-02
217GO:0046323: glucose import4.94E-02
218GO:0006342: chromatin silencing4.94E-02
219GO:0009741: response to brassinosteroid4.94E-02
220GO:0010268: brassinosteroid homeostasis4.94E-02
221GO:0010305: leaf vascular tissue pattern formation4.94E-02
RankGO TermAdjusted P value
1GO:0071633: dihydroceramidase activity0.00E+00
2GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
3GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
4GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
5GO:0001872: (1->3)-beta-D-glucan binding9.37E-05
6GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds5.05E-04
7GO:0010012: steroid 22-alpha hydroxylase activity5.49E-04
8GO:0005227: calcium activated cation channel activity5.49E-04
9GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity5.49E-04
10GO:0004813: alanine-tRNA ligase activity5.49E-04
11GO:0005290: L-histidine transmembrane transporter activity5.49E-04
12GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity5.49E-04
13GO:0008158: hedgehog receptor activity5.49E-04
14GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity5.49E-04
15GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity5.49E-04
16GO:0004830: tryptophan-tRNA ligase activity5.49E-04
17GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity5.49E-04
18GO:0003879: ATP phosphoribosyltransferase activity5.49E-04
19GO:0043425: bHLH transcription factor binding1.18E-03
20GO:0010296: prenylcysteine methylesterase activity1.18E-03
21GO:0004766: spermidine synthase activity1.18E-03
22GO:0008493: tetracycline transporter activity1.18E-03
23GO:0000064: L-ornithine transmembrane transporter activity1.18E-03
24GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.18E-03
25GO:0050736: O-malonyltransferase activity1.18E-03
26GO:0009884: cytokinin receptor activity1.18E-03
27GO:0050017: L-3-cyanoalanine synthase activity1.18E-03
28GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.21E-03
29GO:0004805: trehalose-phosphatase activity1.47E-03
30GO:0005034: osmosensor activity1.94E-03
31GO:0052692: raffinose alpha-galactosidase activity1.94E-03
32GO:0045548: phenylalanine ammonia-lyase activity1.94E-03
33GO:0003913: DNA photolyase activity1.94E-03
34GO:0004557: alpha-galactosidase activity1.94E-03
35GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.50E-03
36GO:0004300: enoyl-CoA hydratase activity2.81E-03
37GO:0015189: L-lysine transmembrane transporter activity2.81E-03
38GO:0016149: translation release factor activity, codon specific2.81E-03
39GO:0015181: arginine transmembrane transporter activity2.81E-03
40GO:0035197: siRNA binding2.81E-03
41GO:0009882: blue light photoreceptor activity2.81E-03
42GO:0005096: GTPase activator activity2.90E-03
43GO:0004845: uracil phosphoribosyltransferase activity3.79E-03
44GO:0010011: auxin binding3.79E-03
45GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed3.79E-03
46GO:0010328: auxin influx transmembrane transporter activity3.79E-03
47GO:0019199: transmembrane receptor protein kinase activity3.79E-03
48GO:0004392: heme oxygenase (decyclizing) activity3.79E-03
49GO:0005471: ATP:ADP antiporter activity4.86E-03
50GO:0003989: acetyl-CoA carboxylase activity4.86E-03
51GO:0008725: DNA-3-methyladenine glycosylase activity4.86E-03
52GO:2001070: starch binding6.02E-03
53GO:0004332: fructose-bisphosphate aldolase activity6.02E-03
54GO:0004709: MAP kinase kinase kinase activity6.02E-03
55GO:0004871: signal transducer activity6.46E-03
56GO:0019900: kinase binding7.28E-03
57GO:0004124: cysteine synthase activity7.28E-03
58GO:0004849: uridine kinase activity7.28E-03
59GO:0016832: aldehyde-lyase activity7.28E-03
60GO:0042802: identical protein binding8.39E-03
61GO:0016762: xyloglucan:xyloglucosyl transferase activity8.61E-03
62GO:0009881: photoreceptor activity8.61E-03
63GO:0003723: RNA binding9.01E-03
64GO:0004518: nuclease activity9.21E-03
65GO:0051015: actin filament binding9.82E-03
66GO:0004519: endonuclease activity9.96E-03
67GO:0043022: ribosome binding1.00E-02
68GO:0003724: RNA helicase activity1.15E-02
69GO:0046914: transition metal ion binding1.15E-02
70GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.31E-02
71GO:0003747: translation release factor activity1.31E-02
72GO:0071949: FAD binding1.31E-02
73GO:0030955: potassium ion binding1.48E-02
74GO:0016798: hydrolase activity, acting on glycosyl bonds1.48E-02
75GO:0004743: pyruvate kinase activity1.48E-02
76GO:0030247: polysaccharide binding1.48E-02
77GO:0004673: protein histidine kinase activity1.65E-02
78GO:0016301: kinase activity1.78E-02
79GO:0004222: metalloendopeptidase activity1.81E-02
80GO:0003691: double-stranded telomeric DNA binding1.83E-02
81GO:0005089: Rho guanyl-nucleotide exchange factor activity1.83E-02
82GO:0004521: endoribonuclease activity2.01E-02
83GO:0000049: tRNA binding2.01E-02
84GO:0000155: phosphorelay sensor kinase activity2.20E-02
85GO:0015266: protein channel activity2.20E-02
86GO:0003774: motor activity2.40E-02
87GO:0008146: sulfotransferase activity2.61E-02
88GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.82E-02
89GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.82E-02
90GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.82E-02
91GO:0043621: protein self-association2.91E-02
92GO:0051536: iron-sulfur cluster binding3.03E-02
93GO:0031418: L-ascorbic acid binding3.03E-02
94GO:0005524: ATP binding3.14E-02
95GO:0043424: protein histidine kinase binding3.25E-02
96GO:0030570: pectate lyase activity3.95E-02
97GO:0008810: cellulase activity3.95E-02
98GO:0015171: amino acid transmembrane transporter activity4.00E-02
99GO:0004812: aminoacyl-tRNA ligase activity4.44E-02
100GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity4.94E-02
RankGO TermAdjusted P value
1GO:0035452: extrinsic component of plastid membrane0.00E+00
2GO:0000408: EKC/KEOPS complex0.00E+00
3GO:0009507: chloroplast2.36E-05
4GO:0046658: anchored component of plasma membrane5.52E-04
5GO:0009986: cell surface5.91E-04
6GO:0080085: signal recognition particle, chloroplast targeting1.18E-03
7GO:0016605: PML body1.94E-03
8GO:0009528: plastid inner membrane1.94E-03
9GO:0030139: endocytic vesicle1.94E-03
10GO:0009317: acetyl-CoA carboxylase complex1.94E-03
11GO:0031225: anchored component of membrane2.31E-03
12GO:0009570: chloroplast stroma2.40E-03
13GO:0032585: multivesicular body membrane2.81E-03
14GO:0032432: actin filament bundle2.81E-03
15GO:0005719: nuclear euchromatin2.81E-03
16GO:0009527: plastid outer membrane3.79E-03
17GO:0015629: actin cytoskeleton5.05E-03
18GO:0031209: SCAR complex6.02E-03
19GO:0031305: integral component of mitochondrial inner membrane1.00E-02
20GO:0000783: nuclear telomere cap complex1.15E-02
21GO:0005786: signal recognition particle, endoplasmic reticulum targeting1.15E-02
22GO:0009706: chloroplast inner membrane1.18E-02
23GO:0010494: cytoplasmic stress granule1.31E-02
24GO:0015030: Cajal body1.48E-02
25GO:0016604: nuclear body1.48E-02
26GO:0005886: plasma membrane1.49E-02
27GO:0005623: cell1.62E-02
28GO:0009707: chloroplast outer membrane1.64E-02
29GO:0016459: myosin complex1.65E-02
30GO:0005884: actin filament1.83E-02
31GO:0000311: plastid large ribosomal subunit2.01E-02
32GO:0005578: proteinaceous extracellular matrix2.20E-02
33GO:0009574: preprophase band2.20E-02
34GO:0030095: chloroplast photosystem II2.40E-02
35GO:0009535: chloroplast thylakoid membrane2.74E-02
36GO:0005856: cytoskeleton3.02E-02
37GO:0009654: photosystem II oxygen evolving complex3.25E-02
38GO:0042651: thylakoid membrane3.25E-02
39GO:0009532: plastid stroma3.48E-02
40GO:0005744: mitochondrial inner membrane presequence translocase complex4.19E-02
41GO:0005871: kinesin complex4.44E-02
42GO:0005770: late endosome4.94E-02
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Gene type



Gene DE type