Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G77630

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000492: box C/D snoRNP assembly0.00E+00
2GO:0042794: rRNA transcription from plastid promoter0.00E+00
3GO:0044154: histone H3-K14 acetylation0.00E+00
4GO:0045014: negative regulation of transcription by glucose0.00E+00
5GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
6GO:0000491: small nucleolar ribonucleoprotein complex assembly0.00E+00
7GO:0090627: plant epidermal cell differentiation0.00E+00
8GO:0035884: arabinan biosynthetic process0.00E+00
9GO:0009606: tropism0.00E+00
10GO:0097164: ammonium ion metabolic process0.00E+00
11GO:0090322: regulation of superoxide metabolic process0.00E+00
12GO:0000372: Group I intron splicing0.00E+00
13GO:1901528: hydrogen peroxide mediated signaling pathway involved in stomatal movement0.00E+00
14GO:0043972: histone H3-K23 acetylation0.00E+00
15GO:0080127: fruit septum development0.00E+00
16GO:0090615: mitochondrial mRNA processing0.00E+00
17GO:0009658: chloroplast organization1.41E-07
18GO:0042793: transcription from plastid promoter2.38E-06
19GO:0009913: epidermal cell differentiation1.56E-04
20GO:1901259: chloroplast rRNA processing2.12E-04
21GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway2.57E-04
22GO:0048437: floral organ development2.76E-04
23GO:0010501: RNA secondary structure unwinding3.18E-04
24GO:0034757: negative regulation of iron ion transport3.29E-04
25GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic3.29E-04
26GO:0080112: seed growth3.29E-04
27GO:1905039: carboxylic acid transmembrane transport3.29E-04
28GO:0043971: histone H3-K18 acetylation3.29E-04
29GO:1905200: gibberellic acid transmembrane transport3.29E-04
30GO:1903866: palisade mesophyll development3.29E-04
31GO:0010063: positive regulation of trichoblast fate specification3.29E-04
32GO:0010480: microsporocyte differentiation3.29E-04
33GO:0090063: positive regulation of microtubule nucleation3.29E-04
34GO:0033206: meiotic cytokinesis3.29E-04
35GO:0042255: ribosome assembly3.48E-04
36GO:0006353: DNA-templated transcription, termination3.48E-04
37GO:0009451: RNA modification3.65E-04
38GO:0000373: Group II intron splicing5.12E-04
39GO:1900865: chloroplast RNA modification6.05E-04
40GO:0010275: NAD(P)H dehydrogenase complex assembly7.18E-04
41GO:0010254: nectary development7.18E-04
42GO:1901529: positive regulation of anion channel activity7.18E-04
43GO:0033566: gamma-tubulin complex localization7.18E-04
44GO:1902326: positive regulation of chlorophyll biosynthetic process7.18E-04
45GO:0010569: regulation of double-strand break repair via homologous recombination7.18E-04
46GO:0010434: bract formation7.18E-04
47GO:0070981: L-asparagine biosynthetic process7.18E-04
48GO:0010271: regulation of chlorophyll catabolic process7.18E-04
49GO:0048439: flower morphogenesis7.18E-04
50GO:0010541: acropetal auxin transport7.18E-04
51GO:0009662: etioplast organization7.18E-04
52GO:1904143: positive regulation of carotenoid biosynthetic process7.18E-04
53GO:0080009: mRNA methylation7.18E-04
54GO:0006529: asparagine biosynthetic process7.18E-04
55GO:0048229: gametophyte development8.13E-04
56GO:0010582: floral meristem determinacy9.28E-04
57GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic1.16E-03
58GO:1901527: abscisic acid-activated signaling pathway involved in stomatal movement1.16E-03
59GO:0080117: secondary growth1.16E-03
60GO:0090391: granum assembly1.16E-03
61GO:0006518: peptide metabolic process1.16E-03
62GO:0042780: tRNA 3'-end processing1.16E-03
63GO:0030029: actin filament-based process1.16E-03
64GO:0009954: proximal/distal pattern formation1.16E-03
65GO:0009432: SOS response1.16E-03
66GO:0080188: RNA-directed DNA methylation1.32E-03
67GO:0006351: transcription, DNA-templated1.35E-03
68GO:0010071: root meristem specification1.67E-03
69GO:0010239: chloroplast mRNA processing1.67E-03
70GO:0043481: anthocyanin accumulation in tissues in response to UV light1.67E-03
71GO:0009800: cinnamic acid biosynthetic process1.67E-03
72GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis1.67E-03
73GO:0000730: DNA recombinase assembly1.67E-03
74GO:0010371: regulation of gibberellin biosynthetic process1.67E-03
75GO:1902476: chloride transmembrane transport1.67E-03
76GO:0009793: embryo development ending in seed dormancy1.80E-03
77GO:1900864: mitochondrial RNA modification2.24E-03
78GO:2000038: regulation of stomatal complex development2.24E-03
79GO:0006479: protein methylation2.24E-03
80GO:0009736: cytokinin-activated signaling pathway2.81E-03
81GO:0032876: negative regulation of DNA endoreduplication2.87E-03
82GO:0030308: negative regulation of cell growth2.87E-03
83GO:0048497: maintenance of floral organ identity2.87E-03
84GO:0006355: regulation of transcription, DNA-templated3.02E-03
85GO:0009646: response to absence of light3.47E-03
86GO:0016554: cytidine to uridine editing3.54E-03
87GO:0042176: regulation of protein catabolic process3.54E-03
88GO:0010315: auxin efflux3.54E-03
89GO:0048831: regulation of shoot system development3.54E-03
90GO:0006559: L-phenylalanine catabolic process3.54E-03
91GO:0003006: developmental process involved in reproduction3.54E-03
92GO:0009643: photosynthetic acclimation3.54E-03
93GO:0010304: PSII associated light-harvesting complex II catabolic process3.54E-03
94GO:0048825: cotyledon development3.72E-03
95GO:0080156: mitochondrial mRNA modification3.98E-03
96GO:2000037: regulation of stomatal complex patterning4.26E-03
97GO:0010310: regulation of hydrogen peroxide metabolic process4.26E-03
98GO:0009955: adaxial/abaxial pattern specification4.26E-03
99GO:0009082: branched-chain amino acid biosynthetic process4.26E-03
100GO:2000033: regulation of seed dormancy process4.26E-03
101GO:0048509: regulation of meristem development4.26E-03
102GO:0009099: valine biosynthetic process4.26E-03
103GO:0032502: developmental process4.26E-03
104GO:0006955: immune response5.03E-03
105GO:0042148: strand invasion5.03E-03
106GO:0006821: chloride transport5.03E-03
107GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway5.03E-03
108GO:0006401: RNA catabolic process5.03E-03
109GO:0052543: callose deposition in cell wall5.85E-03
110GO:0009938: negative regulation of gibberellic acid mediated signaling pathway5.85E-03
111GO:0001522: pseudouridine synthesis5.85E-03
112GO:0009642: response to light intensity5.85E-03
113GO:0030162: regulation of proteolysis5.85E-03
114GO:0048766: root hair initiation5.85E-03
115GO:0009416: response to light stimulus6.07E-03
116GO:0010029: regulation of seed germination6.09E-03
117GO:0009845: seed germination6.48E-03
118GO:0009827: plant-type cell wall modification6.71E-03
119GO:0010212: response to ionizing radiation6.71E-03
120GO:0019430: removal of superoxide radicals6.71E-03
121GO:0009097: isoleucine biosynthetic process6.71E-03
122GO:0032544: plastid translation6.71E-03
123GO:0007389: pattern specification process6.71E-03
124GO:0044030: regulation of DNA methylation6.71E-03
125GO:0098656: anion transmembrane transport7.60E-03
126GO:0048507: meristem development7.60E-03
127GO:0048589: developmental growth7.60E-03
128GO:0000902: cell morphogenesis7.60E-03
129GO:0000160: phosphorelay signal transduction system7.91E-03
130GO:0042761: very long-chain fatty acid biosynthetic process8.55E-03
131GO:0006349: regulation of gene expression by genetic imprinting8.55E-03
132GO:0016571: histone methylation8.55E-03
133GO:0016573: histone acetylation8.55E-03
134GO:0048364: root development9.36E-03
135GO:0010048: vernalization response9.53E-03
136GO:0006535: cysteine biosynthetic process from serine9.53E-03
137GO:0048829: root cap development9.53E-03
138GO:0007166: cell surface receptor signaling pathway1.05E-02
139GO:0009089: lysine biosynthetic process via diaminopimelate1.06E-02
140GO:0015770: sucrose transport1.06E-02
141GO:0009750: response to fructose1.06E-02
142GO:0048765: root hair cell differentiation1.06E-02
143GO:0008380: RNA splicing1.11E-02
144GO:0008361: regulation of cell size1.16E-02
145GO:0006312: mitotic recombination1.16E-02
146GO:0010152: pollen maturation1.16E-02
147GO:0045037: protein import into chloroplast stroma1.16E-02
148GO:0008283: cell proliferation1.23E-02
149GO:0010102: lateral root morphogenesis1.27E-02
150GO:0010075: regulation of meristem growth1.27E-02
151GO:0009934: regulation of meristem structural organization1.38E-02
152GO:0048467: gynoecium development1.38E-02
153GO:0006541: glutamine metabolic process1.38E-02
154GO:0010020: chloroplast fission1.38E-02
155GO:0010540: basipetal auxin transport1.38E-02
156GO:0009266: response to temperature stimulus1.38E-02
157GO:0009734: auxin-activated signaling pathway1.47E-02
158GO:0009901: anther dehiscence1.50E-02
159GO:0042538: hyperosmotic salinity response1.55E-02
160GO:0006071: glycerol metabolic process1.62E-02
161GO:0006364: rRNA processing1.67E-02
162GO:0006468: protein phosphorylation1.69E-02
163GO:0019344: cysteine biosynthetic process1.75E-02
164GO:0009944: polarity specification of adaxial/abaxial axis1.75E-02
165GO:0009863: salicylic acid mediated signaling pathway1.75E-02
166GO:0006338: chromatin remodeling1.75E-02
167GO:0010187: negative regulation of seed germination1.75E-02
168GO:2000377: regulation of reactive oxygen species metabolic process1.75E-02
169GO:0048366: leaf development1.90E-02
170GO:0010431: seed maturation2.00E-02
171GO:0003333: amino acid transmembrane transport2.00E-02
172GO:0016998: cell wall macromolecule catabolic process2.00E-02
173GO:0048367: shoot system development2.04E-02
174GO:0009740: gibberellic acid mediated signaling pathway2.24E-02
175GO:0016569: covalent chromatin modification2.24E-02
176GO:0009831: plant-type cell wall modification involved in multidimensional cell growth2.27E-02
177GO:0071215: cellular response to abscisic acid stimulus2.27E-02
178GO:0010082: regulation of root meristem growth2.27E-02
179GO:0010227: floral organ abscission2.27E-02
180GO:0048443: stamen development2.41E-02
181GO:0006284: base-excision repair2.41E-02
182GO:0042127: regulation of cell proliferation2.41E-02
183GO:0070417: cellular response to cold2.55E-02
184GO:0045892: negative regulation of transcription, DNA-templated2.59E-02
185GO:0048653: anther development2.70E-02
186GO:0042631: cellular response to water deprivation2.70E-02
187GO:0042335: cuticle development2.70E-02
188GO:0010087: phloem or xylem histogenesis2.70E-02
189GO:0009741: response to brassinosteroid2.85E-02
190GO:0009960: endosperm development2.85E-02
191GO:0009958: positive gravitropism2.85E-02
192GO:0010305: leaf vascular tissue pattern formation2.85E-02
193GO:0007018: microtubule-based movement3.00E-02
194GO:0006814: sodium ion transport3.00E-02
195GO:0009749: response to glucose3.15E-02
196GO:0006281: DNA repair3.30E-02
197GO:0010583: response to cyclopentenone3.47E-02
198GO:0016032: viral process3.47E-02
199GO:0009630: gravitropism3.47E-02
200GO:0010090: trichome morphogenesis3.63E-02
201GO:0010252: auxin homeostasis3.79E-02
202GO:0009828: plant-type cell wall loosening3.79E-02
203GO:0006310: DNA recombination3.79E-02
204GO:0040008: regulation of growth3.92E-02
205GO:0071805: potassium ion transmembrane transport3.96E-02
206GO:0045490: pectin catabolic process4.10E-02
207GO:0001666: response to hypoxia4.30E-02
208GO:0010027: thylakoid membrane organization4.30E-02
209GO:0009739: response to gibberellin4.58E-02
210GO:0006974: cellular response to DNA damage stimulus4.65E-02
RankGO TermAdjusted P value
1GO:0008859: exoribonuclease II activity0.00E+00
2GO:0003723: RNA binding6.83E-06
3GO:0004519: endonuclease activity1.39E-04
4GO:0003727: single-stranded RNA binding2.57E-04
5GO:0004016: adenylate cyclase activity3.29E-04
6GO:1905201: gibberellin transmembrane transporter activity3.29E-04
7GO:0008836: diaminopimelate decarboxylase activity3.29E-04
8GO:0042834: peptidoglycan binding3.29E-04
9GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity3.29E-04
10GO:0016274: protein-arginine N-methyltransferase activity3.29E-04
11GO:0004071: aspartate-ammonia ligase activity3.29E-04
12GO:0004160: dihydroxy-acid dehydratase activity3.29E-04
13GO:0005515: protein binding4.19E-04
14GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity7.18E-04
15GO:0009884: cytokinin receptor activity7.18E-04
16GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity7.18E-04
17GO:0004004: ATP-dependent RNA helicase activity9.11E-04
18GO:0009982: pseudouridine synthase activity1.05E-03
19GO:0019843: rRNA binding1.10E-03
20GO:0017150: tRNA dihydrouridine synthase activity1.16E-03
21GO:0045548: phenylalanine ammonia-lyase activity1.16E-03
22GO:0042781: 3'-tRNA processing endoribonuclease activity1.16E-03
23GO:0047334: diphosphate-fructose-6-phosphate 1-phosphotransferase activity1.16E-03
24GO:0005034: osmosensor activity1.16E-03
25GO:0070180: large ribosomal subunit rRNA binding1.16E-03
26GO:0003697: single-stranded DNA binding1.39E-03
27GO:0008508: bile acid:sodium symporter activity1.67E-03
28GO:0010011: auxin binding2.24E-03
29GO:0016836: hydro-lyase activity2.24E-03
30GO:0010328: auxin influx transmembrane transporter activity2.24E-03
31GO:0010385: double-stranded methylated DNA binding2.24E-03
32GO:0005253: anion channel activity2.24E-03
33GO:0030570: pectate lyase activity2.36E-03
34GO:0008725: DNA-3-methyladenine glycosylase activity2.87E-03
35GO:0003690: double-stranded DNA binding2.93E-03
36GO:0003777: microtubule motor activity3.20E-03
37GO:0004784: superoxide dismutase activity3.54E-03
38GO:0005247: voltage-gated chloride channel activity3.54E-03
39GO:0004124: cysteine synthase activity4.26E-03
40GO:0019900: kinase binding4.26E-03
41GO:0008026: ATP-dependent helicase activity4.74E-03
42GO:0000150: recombinase activity5.03E-03
43GO:0030515: snoRNA binding5.03E-03
44GO:0000400: four-way junction DNA binding5.85E-03
45GO:0004520: endodeoxyribonuclease activity5.85E-03
46GO:0008173: RNA methyltransferase activity6.71E-03
47GO:0008889: glycerophosphodiester phosphodiesterase activity7.60E-03
48GO:0000989: transcription factor activity, transcription factor binding7.60E-03
49GO:0004675: transmembrane receptor protein serine/threonine kinase activity8.08E-03
50GO:0004222: metalloendopeptidase activity8.30E-03
51GO:0009672: auxin:proton symporter activity8.55E-03
52GO:0004673: protein histidine kinase activity9.53E-03
53GO:0008515: sucrose transmembrane transporter activity1.06E-02
54GO:0008559: xenobiotic-transporting ATPase activity1.06E-02
55GO:0051539: 4 iron, 4 sulfur cluster binding1.09E-02
56GO:0000175: 3'-5'-exoribonuclease activity1.27E-02
57GO:0003725: double-stranded RNA binding1.27E-02
58GO:0010329: auxin efflux transmembrane transporter activity1.27E-02
59GO:0005315: inorganic phosphate transmembrane transporter activity1.27E-02
60GO:0031072: heat shock protein binding1.27E-02
61GO:0000155: phosphorelay sensor kinase activity1.27E-02
62GO:0043565: sequence-specific DNA binding1.34E-02
63GO:0003677: DNA binding1.41E-02
64GO:0004672: protein kinase activity1.44E-02
65GO:0008289: lipid binding1.45E-02
66GO:0008168: methyltransferase activity1.47E-02
67GO:0005524: ATP binding1.49E-02
68GO:0051119: sugar transmembrane transporter activity1.50E-02
69GO:0016887: ATPase activity1.70E-02
70GO:0043424: protein histidine kinase binding1.87E-02
71GO:0015079: potassium ion transmembrane transporter activity1.87E-02
72GO:0008094: DNA-dependent ATPase activity2.00E-02
73GO:0004540: ribonuclease activity2.00E-02
74GO:0004176: ATP-dependent peptidase activity2.00E-02
75GO:0033612: receptor serine/threonine kinase binding2.00E-02
76GO:0003779: actin binding2.31E-02
77GO:0008514: organic anion transmembrane transporter activity2.41E-02
78GO:0005215: transporter activity2.44E-02
79GO:0018024: histone-lysine N-methyltransferase activity2.55E-02
80GO:0004871: signal transducer activity2.69E-02
81GO:0042803: protein homodimerization activity2.69E-02
82GO:0004402: histone acetyltransferase activity2.70E-02
83GO:0004674: protein serine/threonine kinase activity2.80E-02
84GO:0003713: transcription coactivator activity2.85E-02
85GO:0019901: protein kinase binding3.15E-02
86GO:0015144: carbohydrate transmembrane transporter activity3.56E-02
87GO:0000156: phosphorelay response regulator activity3.63E-02
88GO:0003700: transcription factor activity, sequence-specific DNA binding3.89E-02
89GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity3.96E-02
90GO:0008237: metallopeptidase activity3.96E-02
91GO:0005200: structural constituent of cytoskeleton3.96E-02
92GO:0005351: sugar:proton symporter activity4.01E-02
93GO:0008375: acetylglucosaminyltransferase activity4.65E-02
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Gene type



Gene DE type