gene detail

Gene description

TAIR ID: AT1G60000

Short description: RNA-binding (RRM/RBD/RNP motifs) family protein

Pathogen responsiveness: 0.05

General responsiveness: 2.20

Orthologous

Rice:

OS02G0815200 OS08G0117100

Maize:

GRMZM5G841101

Wheat: No orthologous gene

GO biological process

biological_process

GO cellular component

chloroplast, mitochondrion

GO molecular function

unkown

Protein domain

Pfam	PF00076, RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
SMART	SM00360, RRM

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

24 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	-1.77	4.04E-08
GSE17464	Laer, JA+Flg22 0 h	Laer, JA+Flg22 1 h	-1.58	1.72E-02
GSE17464	Laer, JA+Flg22 0 h	Laer, JA+Flg22 2 h	-1.92	3.00E-03
GSE17464	Laer, control	Laer, Flg22 1 h	-2.09	4.43E-04
GSE17464	Laer, control	Laer, Flg22 2 h	-2.51	4.15E-05
GSE17464	Penta, control	Penta, Flg22 2 h	-1.91	1.29E-03
GSE17464	Penta, control	Penta, Flg22 2 h	-2.53	3.44E-05
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-1.81	5.05E-05
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-2.08	7.91E-06
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.79	4.51E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-3.18	2.36E-09
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	-2.08	6.05E-05
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.74	1.21E-02
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-3.02	1.63E-12
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-2.16	2.77E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-1.57	2.41E-08
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.66	1.17E-08
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-2.56	1.69E-11
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-2.23	1.57E-13
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-2.04	1.79E-04
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-2.68	2.53E-07
GSE5615	Col, WT, water 4 h	Col, WT, HrpZ 4 h	-1.58	6.47E-08
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-1.97	1.29E-03
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-2.03	6.62E-07