GO Enrichment Analysis of Co-expressed Genes with
AT1G60000
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0016553: base conversion or substitution editing | 0.00E+00 |
| 2 | GO:0042820: vitamin B6 catabolic process | 0.00E+00 |
| 3 | GO:0006399: tRNA metabolic process | 0.00E+00 |
| 4 | GO:0061635: regulation of protein complex stability | 0.00E+00 |
| 5 | GO:0042821: pyridoxal biosynthetic process | 0.00E+00 |
| 6 | GO:0015979: photosynthesis | 1.65E-14 |
| 7 | GO:0009735: response to cytokinin | 1.90E-12 |
| 8 | GO:0010027: thylakoid membrane organization | 5.46E-09 |
| 9 | GO:0032544: plastid translation | 1.83E-08 |
| 10 | GO:0006412: translation | 7.62E-08 |
| 11 | GO:0009773: photosynthetic electron transport in photosystem I | 9.69E-08 |
| 12 | GO:0015995: chlorophyll biosynthetic process | 4.22E-07 |
| 13 | GO:0090391: granum assembly | 4.66E-06 |
| 14 | GO:0009658: chloroplast organization | 9.94E-06 |
| 15 | GO:0031365: N-terminal protein amino acid modification | 3.28E-05 |
| 16 | GO:0010196: nonphotochemical quenching | 9.14E-05 |
| 17 | GO:0071482: cellular response to light stimulus | 1.47E-04 |
| 18 | GO:0009443: pyridoxal 5'-phosphate salvage | 1.60E-04 |
| 19 | GO:0043489: RNA stabilization | 1.60E-04 |
| 20 | GO:1904966: positive regulation of vitamin E biosynthetic process | 1.60E-04 |
| 21 | GO:1904964: positive regulation of phytol biosynthetic process | 1.60E-04 |
| 22 | GO:0042371: vitamin K biosynthetic process | 1.60E-04 |
| 23 | GO:0043686: co-translational protein modification | 1.60E-04 |
| 24 | GO:0071588: hydrogen peroxide mediated signaling pathway | 1.60E-04 |
| 25 | GO:0006352: DNA-templated transcription, initiation | 2.97E-04 |
| 26 | GO:0010115: regulation of abscisic acid biosynthetic process | 3.65E-04 |
| 27 | GO:0006729: tetrahydrobiopterin biosynthetic process | 3.65E-04 |
| 28 | GO:0006568: tryptophan metabolic process | 3.65E-04 |
| 29 | GO:0030388: fructose 1,6-bisphosphate metabolic process | 3.65E-04 |
| 30 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 3.65E-04 |
| 31 | GO:0051604: protein maturation | 5.97E-04 |
| 32 | GO:0071492: cellular response to UV-A | 5.97E-04 |
| 33 | GO:0006000: fructose metabolic process | 5.97E-04 |
| 34 | GO:0042254: ribosome biogenesis | 7.49E-04 |
| 35 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 8.53E-04 |
| 36 | GO:0006986: response to unfolded protein | 8.53E-04 |
| 37 | GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis | 8.53E-04 |
| 38 | GO:2001141: regulation of RNA biosynthetic process | 8.53E-04 |
| 39 | GO:0051085: chaperone mediated protein folding requiring cofactor | 8.53E-04 |
| 40 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 8.67E-04 |
| 41 | GO:0071483: cellular response to blue light | 1.13E-03 |
| 42 | GO:0071486: cellular response to high light intensity | 1.13E-03 |
| 43 | GO:0045727: positive regulation of translation | 1.13E-03 |
| 44 | GO:0015994: chlorophyll metabolic process | 1.13E-03 |
| 45 | GO:0006564: L-serine biosynthetic process | 1.43E-03 |
| 46 | GO:0010236: plastoquinone biosynthetic process | 1.43E-03 |
| 47 | GO:0006461: protein complex assembly | 1.43E-03 |
| 48 | GO:0009828: plant-type cell wall loosening | 1.74E-03 |
| 49 | GO:0006561: proline biosynthetic process | 1.76E-03 |
| 50 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 1.76E-03 |
| 51 | GO:0000470: maturation of LSU-rRNA | 1.76E-03 |
| 52 | GO:0000462: maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | 2.11E-03 |
| 53 | GO:0010189: vitamin E biosynthetic process | 2.11E-03 |
| 54 | GO:0010019: chloroplast-nucleus signaling pathway | 2.11E-03 |
| 55 | GO:0009451: RNA modification | 2.44E-03 |
| 56 | GO:0006400: tRNA modification | 2.48E-03 |
| 57 | GO:0009395: phospholipid catabolic process | 2.48E-03 |
| 58 | GO:0009772: photosynthetic electron transport in photosystem II | 2.48E-03 |
| 59 | GO:0018298: protein-chromophore linkage | 2.69E-03 |
| 60 | GO:0006353: DNA-templated transcription, termination | 2.88E-03 |
| 61 | GO:0006605: protein targeting | 2.88E-03 |
| 62 | GO:0042255: ribosome assembly | 2.88E-03 |
| 63 | GO:0009631: cold acclimation | 3.10E-03 |
| 64 | GO:0006002: fructose 6-phosphate metabolic process | 3.29E-03 |
| 65 | GO:0009657: plastid organization | 3.29E-03 |
| 66 | GO:0009637: response to blue light | 3.40E-03 |
| 67 | GO:0034599: cellular response to oxidative stress | 3.55E-03 |
| 68 | GO:0006779: porphyrin-containing compound biosynthetic process | 4.17E-03 |
| 69 | GO:0010114: response to red light | 4.37E-03 |
| 70 | GO:0009688: abscisic acid biosynthetic process | 4.64E-03 |
| 71 | GO:0006949: syncytium formation | 4.64E-03 |
| 72 | GO:0006782: protoporphyrinogen IX biosynthetic process | 4.64E-03 |
| 73 | GO:0009073: aromatic amino acid family biosynthetic process | 5.12E-03 |
| 74 | GO:0043085: positive regulation of catalytic activity | 5.12E-03 |
| 75 | GO:0009750: response to fructose | 5.12E-03 |
| 76 | GO:0018119: peptidyl-cysteine S-nitrosylation | 5.12E-03 |
| 77 | GO:0009664: plant-type cell wall organization | 5.48E-03 |
| 78 | GO:0016024: CDP-diacylglycerol biosynthetic process | 5.62E-03 |
| 79 | GO:0006364: rRNA processing | 5.88E-03 |
| 80 | GO:0006094: gluconeogenesis | 6.14E-03 |
| 81 | GO:0005986: sucrose biosynthetic process | 6.14E-03 |
| 82 | GO:0019253: reductive pentose-phosphate cycle | 6.67E-03 |
| 83 | GO:0010207: photosystem II assembly | 6.67E-03 |
| 84 | GO:0010143: cutin biosynthetic process | 6.67E-03 |
| 85 | GO:0090351: seedling development | 7.22E-03 |
| 86 | GO:0005985: sucrose metabolic process | 7.22E-03 |
| 87 | GO:0055114: oxidation-reduction process | 8.54E-03 |
| 88 | GO:0009695: jasmonic acid biosynthetic process | 8.97E-03 |
| 89 | GO:0009768: photosynthesis, light harvesting in photosystem I | 8.97E-03 |
| 90 | GO:0031408: oxylipin biosynthetic process | 9.59E-03 |
| 91 | GO:0016226: iron-sulfur cluster assembly | 1.02E-02 |
| 92 | GO:0009306: protein secretion | 1.15E-02 |
| 93 | GO:0042744: hydrogen peroxide catabolic process | 1.20E-02 |
| 94 | GO:0080022: primary root development | 1.29E-02 |
| 95 | GO:0008033: tRNA processing | 1.29E-02 |
| 96 | GO:0006662: glycerol ether metabolic process | 1.36E-02 |
| 97 | GO:0010182: sugar mediated signaling pathway | 1.36E-02 |
| 98 | GO:0015986: ATP synthesis coupled proton transport | 1.43E-02 |
| 99 | GO:0000302: response to reactive oxygen species | 1.58E-02 |
| 100 | GO:0048510: regulation of timing of transition from vegetative to reproductive phase | 1.58E-02 |
| 101 | GO:0032502: developmental process | 1.65E-02 |
| 102 | GO:0009409: response to cold | 1.98E-02 |
| 103 | GO:0009826: unidimensional cell growth | 2.17E-02 |
| 104 | GO:0045893: positive regulation of transcription, DNA-templated | 2.19E-02 |
| 105 | GO:0055085: transmembrane transport | 2.48E-02 |
| 106 | GO:0006457: protein folding | 2.54E-02 |
| 107 | GO:0010218: response to far red light | 2.65E-02 |
| 108 | GO:0045087: innate immune response | 2.93E-02 |
| 109 | GO:0030001: metal ion transport | 3.21E-02 |
| 110 | GO:0006839: mitochondrial transport | 3.21E-02 |
| 111 | GO:0045454: cell redox homeostasis | 3.34E-02 |
| 112 | GO:0009644: response to high light intensity | 3.71E-02 |
| 113 | GO:0032259: methylation | 3.94E-02 |
| 114 | GO:0009793: embryo development ending in seed dormancy | 4.33E-02 |
| 115 | GO:0009809: lignin biosynthetic process | 4.34E-02 |
| 116 | GO:0042742: defense response to bacterium | 4.42E-02 |
| 117 | GO:0051603: proteolysis involved in cellular protein catabolic process | 4.44E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity | 0.00E+00 |
| 2 | GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity | 0.00E+00 |
| 3 | GO:1990534: thermospermine oxidase activity | 0.00E+00 |
| 4 | GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity | 0.00E+00 |
| 5 | GO:0050236: pyridoxine:NADP 4-dehydrogenase activity | 0.00E+00 |
| 6 | GO:0010301: xanthoxin dehydrogenase activity | 0.00E+00 |
| 7 | GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | 0.00E+00 |
| 8 | GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity | 0.00E+00 |
| 9 | GO:0019843: rRNA binding | 2.65E-14 |
| 10 | GO:0003735: structural constituent of ribosome | 1.59E-08 |
| 11 | GO:0016851: magnesium chelatase activity | 1.08E-05 |
| 12 | GO:0008266: poly(U) RNA binding | 1.61E-05 |
| 13 | GO:0001053: plastid sigma factor activity | 2.01E-05 |
| 14 | GO:0016987: sigma factor activity | 2.01E-05 |
| 15 | GO:0005528: FK506 binding | 2.78E-05 |
| 16 | GO:0003755: peptidyl-prolyl cis-trans isomerase activity | 6.08E-05 |
| 17 | GO:0004033: aldo-keto reductase (NADP) activity | 1.18E-04 |
| 18 | GO:0042586: peptide deformylase activity | 1.60E-04 |
| 19 | GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | 1.60E-04 |
| 20 | GO:0004321: fatty-acyl-CoA synthase activity | 1.60E-04 |
| 21 | GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity | 1.60E-04 |
| 22 | GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity | 1.60E-04 |
| 23 | GO:0047381: dodecanoyl-[acyl-carrier-protein] hydrolase activity | 1.60E-04 |
| 24 | GO:0004425: indole-3-glycerol-phosphate synthase activity | 1.60E-04 |
| 25 | GO:0016168: chlorophyll binding | 2.10E-04 |
| 26 | GO:0016630: protochlorophyllide reductase activity | 3.65E-04 |
| 27 | GO:0047746: chlorophyllase activity | 3.65E-04 |
| 28 | GO:0004617: phosphoglycerate dehydrogenase activity | 3.65E-04 |
| 29 | GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity | 3.65E-04 |
| 30 | GO:0004751: ribose-5-phosphate isomerase activity | 5.97E-04 |
| 31 | GO:0070402: NADPH binding | 5.97E-04 |
| 32 | GO:0016296: palmitoyl-[acyl-carrier-protein] hydrolase activity | 5.97E-04 |
| 33 | GO:0016295: myristoyl-[acyl-carrier-protein] hydrolase activity | 5.97E-04 |
| 34 | GO:0051087: chaperone binding | 6.66E-04 |
| 35 | GO:0022891: substrate-specific transmembrane transporter activity | 8.67E-04 |
| 36 | GO:0043495: protein anchor | 1.13E-03 |
| 37 | GO:0003959: NADPH dehydrogenase activity | 1.43E-03 |
| 38 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 1.43E-03 |
| 39 | GO:0016688: L-ascorbate peroxidase activity | 1.76E-03 |
| 40 | GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity | 1.76E-03 |
| 41 | GO:0004130: cytochrome-c peroxidase activity | 1.76E-03 |
| 42 | GO:0004366: glycerol-3-phosphate O-acyltransferase activity | 1.76E-03 |
| 43 | GO:0016597: amino acid binding | 1.95E-03 |
| 44 | GO:0051920: peroxiredoxin activity | 2.11E-03 |
| 45 | GO:0019899: enzyme binding | 2.48E-03 |
| 46 | GO:0008235: metalloexopeptidase activity | 2.48E-03 |
| 47 | GO:0003723: RNA binding | 2.72E-03 |
| 48 | GO:0052747: sinapyl alcohol dehydrogenase activity | 2.88E-03 |
| 49 | GO:0016209: antioxidant activity | 2.88E-03 |
| 50 | GO:0016207: 4-coumarate-CoA ligase activity | 3.72E-03 |
| 51 | GO:0004601: peroxidase activity | 4.12E-03 |
| 52 | GO:0047617: acyl-CoA hydrolase activity | 4.17E-03 |
| 53 | GO:0016788: hydrolase activity, acting on ester bonds | 4.21E-03 |
| 54 | GO:0008047: enzyme activator activity | 4.64E-03 |
| 55 | GO:0004177: aminopeptidase activity | 5.12E-03 |
| 56 | GO:0045551: cinnamyl-alcohol dehydrogenase activity | 5.62E-03 |
| 57 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 5.88E-03 |
| 58 | GO:0004022: alcohol dehydrogenase (NAD) activity | 6.14E-03 |
| 59 | GO:0008131: primary amine oxidase activity | 6.67E-03 |
| 60 | GO:0031409: pigment binding | 7.79E-03 |
| 61 | GO:0051536: iron-sulfur cluster binding | 8.38E-03 |
| 62 | GO:0009055: electron carrier activity | 9.70E-03 |
| 63 | GO:0003727: single-stranded RNA binding | 1.15E-02 |
| 64 | GO:0047134: protein-disulfide reductase activity | 1.22E-02 |
| 65 | GO:0046933: proton-transporting ATP synthase activity, rotational mechanism | 1.36E-02 |
| 66 | GO:0008080: N-acetyltransferase activity | 1.36E-02 |
| 67 | GO:0050662: coenzyme binding | 1.43E-02 |
| 68 | GO:0004791: thioredoxin-disulfide reductase activity | 1.43E-02 |
| 69 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.73E-02 |
| 70 | GO:0016791: phosphatase activity | 1.81E-02 |
| 71 | GO:0008483: transaminase activity | 1.89E-02 |
| 72 | GO:0016491: oxidoreductase activity | 1.90E-02 |
| 73 | GO:0008168: methyltransferase activity | 2.17E-02 |
| 74 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 2.39E-02 |
| 75 | GO:0008236: serine-type peptidase activity | 2.39E-02 |
| 76 | GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity | 2.47E-02 |
| 77 | GO:0005507: copper ion binding | 2.86E-02 |
| 78 | GO:0046872: metal ion binding | 2.93E-02 |
| 79 | GO:0003993: acid phosphatase activity | 3.02E-02 |
| 80 | GO:0051539: 4 iron, 4 sulfur cluster binding | 3.21E-02 |
| 81 | GO:0004185: serine-type carboxypeptidase activity | 3.51E-02 |
| 82 | GO:0051287: NAD binding | 4.02E-02 |
| 83 | GO:0003690: double-stranded DNA binding | 4.44E-02 |
| 84 | GO:0004519: endonuclease activity | 4.46E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0009515: granal stacked thylakoid | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 2.49E-51 |
| 3 | GO:0009570: chloroplast stroma | 4.41E-34 |
| 4 | GO:0009941: chloroplast envelope | 1.44E-24 |
| 5 | GO:0009535: chloroplast thylakoid membrane | 3.30E-22 |
| 6 | GO:0009579: thylakoid | 1.75E-18 |
| 7 | GO:0009534: chloroplast thylakoid | 1.21E-15 |
| 8 | GO:0009543: chloroplast thylakoid lumen | 4.33E-11 |
| 9 | GO:0005840: ribosome | 4.65E-09 |
| 10 | GO:0031977: thylakoid lumen | 5.06E-08 |
| 11 | GO:0010007: magnesium chelatase complex | 4.66E-06 |
| 12 | GO:0009523: photosystem II | 1.03E-04 |
| 13 | GO:0009547: plastid ribosome | 1.60E-04 |
| 14 | GO:0010319: stromule | 1.64E-04 |
| 15 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 1.80E-04 |
| 16 | GO:0048046: apoplast | 3.71E-04 |
| 17 | GO:0000312: plastid small ribosomal subunit | 4.38E-04 |
| 18 | GO:0030095: chloroplast photosystem II | 4.38E-04 |
| 19 | GO:0042651: thylakoid membrane | 6.66E-04 |
| 20 | GO:0009654: photosystem II oxygen evolving complex | 6.66E-04 |
| 21 | GO:0015935: small ribosomal subunit | 7.30E-04 |
| 22 | GO:0009526: plastid envelope | 1.13E-03 |
| 23 | GO:0009706: chloroplast inner membrane | 1.19E-03 |
| 24 | GO:0019898: extrinsic component of membrane | 1.35E-03 |
| 25 | GO:0055035: plastid thylakoid membrane | 1.43E-03 |
| 26 | GO:0010287: plastoglobule | 1.47E-03 |
| 27 | GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1) | 1.76E-03 |
| 28 | GO:0009533: chloroplast stromal thylakoid | 2.48E-03 |
| 29 | GO:0016020: membrane | 5.36E-03 |
| 30 | GO:0000311: plastid large ribosomal subunit | 5.62E-03 |
| 31 | GO:0005578: proteinaceous extracellular matrix | 6.14E-03 |
| 32 | GO:0030076: light-harvesting complex | 7.22E-03 |
| 33 | GO:0005618: cell wall | 1.29E-02 |
| 34 | GO:0005759: mitochondrial matrix | 1.32E-02 |
| 35 | GO:0009522: photosystem I | 1.43E-02 |
| 36 | GO:0009536: plastid | 1.71E-02 |
| 37 | GO:0009505: plant-type cell wall | 1.76E-02 |
| 38 | GO:0009295: nucleoid | 1.89E-02 |
| 39 | GO:0022627: cytosolic small ribosomal subunit | 1.92E-02 |
| 40 | GO:0030529: intracellular ribonucleoprotein complex | 2.05E-02 |
| 41 | GO:0005777: peroxisome | 2.19E-02 |
| 42 | GO:0015934: large ribosomal subunit | 2.74E-02 |
| 43 | GO:0031969: chloroplast membrane | 2.79E-02 |
| 44 | GO:0043231: intracellular membrane-bounded organelle | 4.52E-02 |