gene detail

Gene description

TAIR ID: AT1G59870

Short description: ABC-2 and Plant PDR ABC-type transporter family protein

Pathogen responsiveness: 0.10

General responsiveness: 0.04

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G029506

Wheat: No orthologous gene

GO biological process

systemic acquired resistance, defense response to bacterium, defense response to fungus, incompatible interaction, drug transmembrane transport, defense response by callose deposition in cell wall, indole glucosinolate catabolic process, cadmium ion transport, response to abscisic acid, negative regulation of defense response, cellular response to indolebutyric acid stimulus

GO cellular component

chloroplast envelope, plasma membrane, chloroplast, mitochondrion, vacuolar membrane, integral component of membrane, membrane

GO molecular function

ATPase activity, coupled to transmembrane movement of substances, cadmium ion transmembrane transporter activity, ATP binding

Protein domain

Pfam	PF14510, ABC-transporter extracellular N-terminal
Pfam	PF00005, ABC transporter
Pfam	PF08370, Plant PDR ABC transporter associated
Pfam	PF01061, ABC-2 type transporter
SMART	SM00382, AAA

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G56110, AT3G15210, AT1G62300, AT1G50640

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 30 (Top5%)

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

19 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE11807	Col, WT, water 4 h	Col, WT, Flg22 4 h	2.12	2.37E-02
GSE18329	Col, wrky72_1, control	Col, wrky72_1, Hpa noco2 96 h	2.12	2.65E-11
GSE18329	Col, wrky72_1, control	Col, wrky72_2, Hpa noco2 96 h	1.62	1.80E-09
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	1.52	8.00E-05
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-1.53	2.11E-02
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	1.69	3.02E-08
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	1.50	3.06E-07
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	2.27	5.44E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	1.57	8.86E-08
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	2.36	2.93E-10
GSE45214	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 4 h	2.29	7.19E-10
GSE45214	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	2.02	5.21E-09
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	3.44	6.34E-13
GSE45214	Col, npr1, PstDC3000 AvrRpt2 0 h	Col, npr1, PstDC3000 AvrRpt2 4 h	2.24	1.40E-09
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	1.90	2.55E-02
GSE52979	Col, WT, acetone	Col, WT, acetone flg22_2 h	2.87	7.64E-11
GSE52979	Col, WT, oxo_C14_HSL	Col, WT, oxo_C14_HSL flg22_2 h	3.05	2.87E-11
GSE56094	Col, WT, control 3 h	Col, WT, hrpA- 3 h	1.85	2.14E-05
GSE6556	Col, gh3.5, control	Col, gh3.5, PstDC3000 AvrRpt2 48 h	2.37	6.08E-05