co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G59870

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010941: regulation of cell death	2.41E-05
2	GO:0055046: microgametogenesis	2.52E-05
3	GO:0019483: beta-alanine biosynthetic process	6.16E-05
4	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	6.16E-05
5	GO:0071712: ER-associated misfolded protein catabolic process	6.16E-05
6	GO:0006212: uracil catabolic process	6.16E-05
7	GO:0071215: cellular response to abscisic acid stimulus	6.70E-05
8	GO:0010498: proteasomal protein catabolic process	1.09E-04
9	GO:0009617: response to bacterium	1.18E-04
10	GO:0010104: regulation of ethylene-activated signaling pathway	1.62E-04
11	GO:0002679: respiratory burst involved in defense response	1.62E-04
12	GO:0048194: Golgi vesicle budding	1.62E-04
13	GO:0051123: RNA polymerase II transcriptional preinitiation complex assembly	2.21E-04
14	GO:1902584: positive regulation of response to water deprivation	2.21E-04
15	GO:0008219: cell death	2.39E-04
16	GO:0048015: phosphatidylinositol-mediated signaling	2.84E-04
17	GO:0043966: histone H3 acetylation	4.20E-04
18	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.73E-04
19	GO:1900056: negative regulation of leaf senescence	4.92E-04
20	GO:0043562: cellular response to nitrogen levels	6.45E-04
21	GO:2000031: regulation of salicylic acid mediated signaling pathway	6.45E-04
22	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	6.45E-04
23	GO:0009626: plant-type hypersensitive response	6.55E-04
24	GO:0051865: protein autoubiquitination	7.25E-04
25	GO:0010112: regulation of systemic acquired resistance	7.25E-04
26	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	8.07E-04
27	GO:0009870: defense response signaling pathway, resistance gene-dependent	8.92E-04
28	GO:0009682: induced systemic resistance	9.78E-04
29	GO:0072593: reactive oxygen species metabolic process	9.78E-04
30	GO:0006352: DNA-templated transcription, initiation	9.78E-04
31	GO:0071365: cellular response to auxin stimulus	1.07E-03
32	GO:0006807: nitrogen compound metabolic process	1.16E-03
33	GO:0046854: phosphatidylinositol phosphorylation	1.35E-03
34	GO:0006468: protein phosphorylation	1.40E-03
35	GO:0016567: protein ubiquitination	1.48E-03
36	GO:0031408: oxylipin biosynthetic process	1.76E-03
37	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.87E-03
38	GO:0031348: negative regulation of defense response	1.87E-03
39	GO:0071456: cellular response to hypoxia	1.87E-03
40	GO:0009625: response to insect	1.98E-03
41	GO:0009561: megagametogenesis	2.10E-03
42	GO:0042631: cellular response to water deprivation	2.33E-03
43	GO:0010200: response to chitin	2.40E-03
44	GO:0008360: regulation of cell shape	2.45E-03
45	GO:0048544: recognition of pollen	2.57E-03
46	GO:0016042: lipid catabolic process	3.31E-03
47	GO:0051607: defense response to virus	3.49E-03
48	GO:0001666: response to hypoxia	3.63E-03
49	GO:0009627: systemic acquired resistance	3.90E-03
50	GO:0048573: photoperiodism, flowering	4.05E-03
51	GO:0006950: response to stress	4.05E-03
52	GO:0009867: jasmonic acid mediated signaling pathway	5.11E-03
53	GO:0006099: tricarboxylic acid cycle	5.26E-03
54	GO:0006897: endocytosis	5.75E-03
55	GO:0000209: protein polyubiquitination	6.25E-03
56	GO:0031347: regulation of defense response	6.94E-03
57	GO:0009736: cytokinin-activated signaling pathway	7.47E-03
58	GO:0042545: cell wall modification	9.36E-03
59	GO:0018105: peptidyl-serine phosphorylation	9.75E-03
60	GO:0051726: regulation of cell cycle	9.96E-03
61	GO:0006413: translational initiation	1.34E-02
62	GO:0045490: pectin catabolic process	1.40E-02
63	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.52E-02
64	GO:0007166: cell surface receptor signaling pathway	1.54E-02
65	GO:0006952: defense response	1.64E-02
66	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	2.29E-02
67	GO:0046777: protein autophosphorylation	2.34E-02
68	GO:0006869: lipid transport	2.71E-02
69	GO:0009751: response to salicylic acid	2.92E-02
70	GO:0006629: lipid metabolic process	2.95E-02
71	GO:0009408: response to heat	2.95E-02
72	GO:0016310: phosphorylation	3.00E-02
73	GO:0048364: root development	3.04E-02
74	GO:0009873: ethylene-activated signaling pathway	3.54E-02
75	GO:0009738: abscisic acid-activated signaling pathway	4.33E-02
76	GO:0009611: response to wounding	4.50E-02
77	GO:0035556: intracellular signal transduction	4.61E-02
78	GO:0045893: positive regulation of transcription, DNA-templated	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0003837: beta-ureidopropionase activity	0.00E+00
2	GO:0004012: phospholipid-translocating ATPase activity	3.17E-06
3	GO:0001102: RNA polymerase II activating transcription factor binding	2.41E-05
4	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	2.41E-05
5	GO:0016303: 1-phosphatidylinositol-3-kinase activity	2.41E-05
6	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.52E-05
7	GO:0005524: ATP binding	2.62E-05
8	GO:0044390: ubiquitin-like protein conjugating enzyme binding	6.16E-05
9	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	1.09E-04
10	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	2.21E-04
11	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.21E-04
12	GO:0004842: ubiquitin-protein transferase activity	4.52E-04
13	GO:0004620: phospholipase activity	4.92E-04
14	GO:0070290: N-acylphosphatidylethanolamine-specific phospholipase D activity	6.45E-04
15	GO:0003843: 1,3-beta-D-glucan synthase activity	6.45E-04
16	GO:0004630: phospholipase D activity	6.45E-04
17	GO:0047372: acylglycerol lipase activity	9.78E-04
18	GO:0005516: calmodulin binding	1.29E-03
19	GO:0017025: TBP-class protein binding	1.35E-03
20	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.56E-03
21	GO:0000287: magnesium ion binding	1.85E-03
22	GO:0004402: histone acetyltransferase activity	2.33E-03
23	GO:0061630: ubiquitin protein ligase activity	2.44E-03
24	GO:0010181: FMN binding	2.57E-03
25	GO:0004672: protein kinase activity	3.04E-03
26	GO:0009931: calcium-dependent protein serine/threonine kinase activity	3.90E-03
27	GO:0030247: polysaccharide binding	4.05E-03
28	GO:0004683: calmodulin-dependent protein kinase activity	4.05E-03
29	GO:0005096: GTPase activator activity	4.49E-03
30	GO:0016301: kinase activity	5.45E-03
31	GO:0035091: phosphatidylinositol binding	6.42E-03
32	GO:0016298: lipase activity	7.65E-03
33	GO:0015171: amino acid transmembrane transporter activity	8.02E-03
34	GO:0031625: ubiquitin protein ligase binding	8.02E-03
35	GO:0045330: aspartyl esterase activity	8.02E-03
36	GO:0045735: nutrient reservoir activity	8.40E-03
37	GO:0030599: pectinesterase activity	9.16E-03
38	GO:0016746: transferase activity, transferring acyl groups	9.75E-03
39	GO:0008270: zinc ion binding	1.11E-02
40	GO:0046910: pectinesterase inhibitor activity	1.34E-02
41	GO:0004674: protein serine/threonine kinase activity	1.41E-02
42	GO:0003743: translation initiation factor activity	1.57E-02
43	GO:0046982: protein heterodimerization activity	1.89E-02
44	GO:0043531: ADP binding	2.04E-02
45	GO:0016887: ATPase activity	4.03E-02

Rank	GO Term	Adjusted P value
1	GO:0005942: phosphatidylinositol 3-kinase complex	0.00E+00
2	GO:0045252: oxoglutarate dehydrogenase complex	2.41E-05
3	GO:0000124: SAGA complex	6.16E-05
4	GO:0036513: Derlin-1 retrotranslocation complex	1.62E-04
5	GO:0005669: transcription factor TFIID complex	5.68E-04
6	GO:0000148: 1,3-beta-D-glucan synthase complex	6.45E-04
7	GO:0031410: cytoplasmic vesicle	1.87E-03
8	GO:0009504: cell plate	2.70E-03
9	GO:0071944: cell periphery	3.08E-03
10	GO:0000151: ubiquitin ligase complex	4.34E-03
11	GO:0016021: integral component of membrane	4.72E-03
12	GO:0005886: plasma membrane	5.17E-03
13	GO:0016020: membrane	1.38E-02
14	GO:0005774: vacuolar membrane	4.23E-02