co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G59870

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0019481: L-alanine catabolic process, by transamination	0.00E+00
2	GO:0010398: xylogalacturonan metabolic process	0.00E+00
3	GO:0009448: gamma-aminobutyric acid metabolic process	0.00E+00
4	GO:0098755: maintenance of seed dormancy by absisic acid	0.00E+00
5	GO:0042891: antibiotic transport	0.00E+00
6	GO:0006105: succinate metabolic process	0.00E+00
7	GO:0019484: beta-alanine catabolic process	0.00E+00
8	GO:0009399: nitrogen fixation	1.24E-05
9	GO:0006540: glutamate decarboxylation to succinate	1.73E-04
10	GO:0035266: meristem growth	1.73E-04
11	GO:0009450: gamma-aminobutyric acid catabolic process	1.73E-04
12	GO:0007292: female gamete generation	1.73E-04
13	GO:1990641: response to iron ion starvation	1.73E-04
14	GO:0010184: cytokinin transport	1.73E-04
15	GO:1902265: abscisic acid homeostasis	1.73E-04
16	GO:0009865: pollen tube adhesion	1.73E-04
17	GO:0046520: sphingoid biosynthetic process	1.73E-04
18	GO:0048829: root cap development	2.85E-04
19	GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine	3.92E-04
20	GO:0009257: 10-formyltetrahydrofolate biosynthetic process	3.92E-04
21	GO:0032509: endosome transport via multivesicular body sorting pathway	3.92E-04
22	GO:0010033: response to organic substance	3.92E-04
23	GO:0009727: detection of ethylene stimulus	3.92E-04
24	GO:0006101: citrate metabolic process	3.92E-04
25	GO:0051788: response to misfolded protein	3.92E-04
26	GO:0006099: tricarboxylic acid cycle	4.64E-04
27	GO:0007034: vacuolar transport	4.87E-04
28	GO:0009871: jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway	6.40E-04
29	GO:0060968: regulation of gene silencing	6.40E-04
30	GO:0006954: inflammatory response	6.40E-04
31	GO:1900140: regulation of seedling development	6.40E-04
32	GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	6.40E-04
33	GO:0017006: protein-tetrapyrrole linkage	6.40E-04
34	GO:0046686: response to cadmium ion	7.34E-04
35	GO:0006882: cellular zinc ion homeostasis	9.13E-04
36	GO:0000578: embryonic axis specification	9.13E-04
37	GO:0006624: vacuolar protein processing	9.13E-04
38	GO:0048194: Golgi vesicle budding	9.13E-04
39	GO:0006020: inositol metabolic process	9.13E-04
40	GO:0070301: cellular response to hydrogen peroxide	9.13E-04
41	GO:0009584: detection of visible light	9.13E-04
42	GO:0015749: monosaccharide transport	9.13E-04
43	GO:0009113: purine nucleobase biosynthetic process	9.13E-04
44	GO:0048367: shoot system development	1.12E-03
45	GO:0006878: cellular copper ion homeostasis	1.21E-03
46	GO:0006542: glutamine biosynthetic process	1.21E-03
47	GO:0009687: abscisic acid metabolic process	1.21E-03
48	GO:0006536: glutamate metabolic process	1.21E-03
49	GO:0042273: ribosomal large subunit biogenesis	1.21E-03
50	GO:0046323: glucose import	1.30E-03
51	GO:0048544: recognition of pollen	1.40E-03
52	GO:0043097: pyrimidine nucleoside salvage	1.54E-03
53	GO:0006090: pyruvate metabolic process	1.54E-03
54	GO:0050665: hydrogen peroxide biosynthetic process	1.89E-03
55	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.89E-03
56	GO:0048827: phyllome development	1.89E-03
57	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	1.89E-03
58	GO:0048232: male gamete generation	1.89E-03
59	GO:0043248: proteasome assembly	1.89E-03
60	GO:0042732: D-xylose metabolic process	1.89E-03
61	GO:1900425: negative regulation of defense response to bacterium	1.89E-03
62	GO:0006206: pyrimidine nucleobase metabolic process	1.89E-03
63	GO:0048364: root development	2.27E-03
64	GO:0006694: steroid biosynthetic process	2.27E-03
65	GO:0001666: response to hypoxia	2.30E-03
66	GO:0009395: phospholipid catabolic process	2.67E-03
67	GO:0070370: cellular heat acclimation	2.67E-03
68	GO:0009396: folic acid-containing compound biosynthetic process	2.67E-03
69	GO:0010078: maintenance of root meristem identity	3.09E-03
70	GO:0006102: isocitrate metabolic process	3.09E-03
71	GO:0016559: peroxisome fission	3.09E-03
72	GO:0009819: drought recovery	3.09E-03
73	GO:0009690: cytokinin metabolic process	3.09E-03
74	GO:0006491: N-glycan processing	3.09E-03
75	GO:1900150: regulation of defense response to fungus	3.09E-03
76	GO:0010311: lateral root formation	3.14E-03
77	GO:0006468: protein phosphorylation	3.52E-03
78	GO:0010262: somatic embryogenesis	3.54E-03
79	GO:0007338: single fertilization	4.00E-03
80	GO:0009051: pentose-phosphate shunt, oxidative branch	4.00E-03
81	GO:0006098: pentose-phosphate shunt	4.00E-03
82	GO:0046916: cellular transition metal ion homeostasis	4.00E-03
83	GO:0008202: steroid metabolic process	4.49E-03
84	GO:0035999: tetrahydrofolate interconversion	4.49E-03
85	GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway	4.49E-03
86	GO:0006535: cysteine biosynthetic process from serine	4.99E-03
87	GO:0006378: mRNA polyadenylation	5.52E-03
88	GO:0010015: root morphogenesis	5.52E-03
89	GO:0052544: defense response by callose deposition in cell wall	5.52E-03
90	GO:0010105: negative regulation of ethylene-activated signaling pathway	6.06E-03
91	GO:0071365: cellular response to auxin stimulus	6.06E-03
92	GO:0000266: mitochondrial fission	6.06E-03
93	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.48E-03
94	GO:0006813: potassium ion transport	6.55E-03
95	GO:0006108: malate metabolic process	6.61E-03
96	GO:0016192: vesicle-mediated transport	6.61E-03
97	GO:0034605: cellular response to heat	7.20E-03
98	GO:0006541: glutamine metabolic process	7.20E-03
99	GO:0002237: response to molecule of bacterial origin	7.20E-03
100	GO:0009933: meristem structural organization	7.20E-03
101	GO:0090351: seedling development	7.79E-03
102	GO:0010030: positive regulation of seed germination	7.79E-03
103	GO:0046854: phosphatidylinositol phosphorylation	7.79E-03
104	GO:0007031: peroxisome organization	7.79E-03
105	GO:0005985: sucrose metabolic process	7.79E-03
106	GO:0009626: plant-type hypersensitive response	8.25E-03
107	GO:0006863: purine nucleobase transport	8.41E-03
108	GO:0000162: tryptophan biosynthetic process	8.41E-03
109	GO:0006487: protein N-linked glycosylation	9.03E-03
110	GO:0019344: cysteine biosynthetic process	9.03E-03
111	GO:0009742: brassinosteroid mediated signaling pathway	9.89E-03
112	GO:0051260: protein homooligomerization	1.03E-02
113	GO:0031408: oxylipin biosynthetic process	1.03E-02
114	GO:0030433: ubiquitin-dependent ERAD pathway	1.10E-02
115	GO:0071456: cellular response to hypoxia	1.10E-02
116	GO:0010017: red or far-red light signaling pathway	1.10E-02
117	GO:0035428: hexose transmembrane transport	1.10E-02
118	GO:0009651: response to salt stress	1.16E-02
119	GO:0040007: growth	1.17E-02
120	GO:0001944: vasculature development	1.17E-02
121	GO:0009625: response to insect	1.17E-02
122	GO:0071215: cellular response to abscisic acid stimulus	1.17E-02
123	GO:0042147: retrograde transport, endosome to Golgi	1.32E-02
124	GO:0009790: embryo development	1.37E-02
125	GO:0042391: regulation of membrane potential	1.39E-02
126	GO:0080022: primary root development	1.39E-02
127	GO:0015991: ATP hydrolysis coupled proton transport	1.39E-02
128	GO:0042631: cellular response to water deprivation	1.39E-02
129	GO:0010182: sugar mediated signaling pathway	1.47E-02
130	GO:0006885: regulation of pH	1.47E-02
131	GO:0045489: pectin biosynthetic process	1.47E-02
132	GO:0010154: fruit development	1.47E-02
133	GO:0009737: response to abscisic acid	1.51E-02
134	GO:0010150: leaf senescence	1.62E-02
135	GO:0010183: pollen tube guidance	1.62E-02
136	GO:0006891: intra-Golgi vesicle-mediated transport	1.70E-02
137	GO:0006635: fatty acid beta-oxidation	1.70E-02
138	GO:0009733: response to auxin	1.76E-02
139	GO:0010583: response to cyclopentenone	1.78E-02
140	GO:0007166: cell surface receptor signaling pathway	1.85E-02
141	GO:0071281: cellular response to iron ion	1.87E-02
142	GO:0006914: autophagy	1.95E-02
143	GO:0009567: double fertilization forming a zygote and endosperm	1.95E-02
144	GO:0010286: heat acclimation	2.04E-02
145	GO:0071805: potassium ion transmembrane transport	2.04E-02
146	GO:0051607: defense response to virus	2.12E-02
147	GO:0016126: sterol biosynthetic process	2.21E-02
148	GO:0010029: regulation of seed germination	2.30E-02
149	GO:0042128: nitrate assimilation	2.39E-02
150	GO:0048573: photoperiodism, flowering	2.48E-02
151	GO:0006950: response to stress	2.48E-02
152	GO:0006810: transport	2.62E-02
153	GO:0018298: protein-chromophore linkage	2.67E-02
154	GO:0008219: cell death	2.67E-02
155	GO:0006499: N-terminal protein myristoylation	2.87E-02
156	GO:0006811: ion transport	2.87E-02
157	GO:0009723: response to ethylene	2.90E-02
158	GO:0010043: response to zinc ion	2.96E-02
159	GO:0010119: regulation of stomatal movement	2.96E-02
160	GO:0006865: amino acid transport	3.06E-02
161	GO:0080167: response to karrikin	3.11E-02
162	GO:0016051: carbohydrate biosynthetic process	3.16E-02
163	GO:0045087: innate immune response	3.16E-02
164	GO:0030001: metal ion transport	3.47E-02
165	GO:0042542: response to hydrogen peroxide	3.68E-02
166	GO:0045454: cell redox homeostasis	3.72E-02
167	GO:0009640: photomorphogenesis	3.79E-02
168	GO:0051707: response to other organism	3.79E-02
169	GO:0006869: lipid transport	4.07E-02
170	GO:0009965: leaf morphogenesis	4.12E-02
171	GO:0000165: MAPK cascade	4.34E-02
172	GO:0007165: signal transduction	4.36E-02
173	GO:0006812: cation transport	4.45E-02
174	GO:0009408: response to heat	4.57E-02
175	GO:0006486: protein glycosylation	4.68E-02
176	GO:0009585: red, far-red light phototransduction	4.68E-02
177	GO:0051603: proteolysis involved in cellular protein catabolic process	4.80E-02
178	GO:0006857: oligopeptide transport	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0034387: 4-aminobutyrate:pyruvate transaminase activity	0.00E+00
2	GO:0015211: purine nucleoside transmembrane transporter activity	0.00E+00
3	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
4	GO:0009045: xylose isomerase activity	0.00E+00
5	GO:0005358: high-affinity hydrogen:glucose symporter activity	0.00E+00
6	GO:0004356: glutamate-ammonia ligase activity	3.73E-05
7	GO:0005524: ATP binding	5.17E-05
8	GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity	1.73E-04
9	GO:0009679: hexose:proton symporter activity	1.73E-04
10	GO:0000170: sphingosine hydroxylase activity	1.73E-04
11	GO:0046870: cadmium ion binding	1.73E-04
12	GO:0004112: cyclic-nucleotide phosphodiesterase activity	1.73E-04
13	GO:0003867: 4-aminobutyrate transaminase activity	1.73E-04
14	GO:0032791: lead ion binding	3.92E-04
15	GO:0009883: red or far-red light photoreceptor activity	3.92E-04
16	GO:0003994: aconitate hydratase activity	3.92E-04
17	GO:0004488: methylenetetrahydrofolate dehydrogenase (NADP+) activity	3.92E-04
18	GO:0004477: methenyltetrahydrofolate cyclohydrolase activity	3.92E-04
19	GO:0038199: ethylene receptor activity	3.92E-04
20	GO:0032934: sterol binding	3.92E-04
21	GO:0042284: sphingolipid delta-4 desaturase activity	3.92E-04
22	GO:0047012: sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity	3.92E-04
23	GO:0004329: formate-tetrahydrofolate ligase activity	3.92E-04
24	GO:0000155: phosphorelay sensor kinase activity	4.32E-04
25	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	6.36E-04
26	GO:0042802: identical protein binding	6.36E-04
27	GO:0008020: G-protein coupled photoreceptor activity	6.40E-04
28	GO:0016595: glutamate binding	6.40E-04
29	GO:0004473: malate dehydrogenase (decarboxylating) (NADP+) activity	6.40E-04
30	GO:0003854: 3-beta-hydroxy-delta5-steroid dehydrogenase activity	6.40E-04
31	GO:0003955: NAD(P)H dehydrogenase (quinone) activity	6.40E-04
32	GO:0032403: protein complex binding	6.40E-04
33	GO:0016301: kinase activity	7.95E-04
34	GO:0051740: ethylene binding	9.13E-04
35	GO:0004571: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity	9.13E-04
36	GO:0048027: mRNA 5'-UTR binding	9.13E-04
37	GO:0000285: 1-phosphatidylinositol-3-phosphate 5-kinase activity	9.13E-04
38	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	9.13E-04
39	GO:0004108: citrate (Si)-synthase activity	9.13E-04
40	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	1.21E-03
41	GO:0004834: tryptophan synthase activity	1.21E-03
42	GO:0004737: pyruvate decarboxylase activity	1.21E-03
43	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.21E-03
44	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	1.21E-03
45	GO:0043015: gamma-tubulin binding	1.21E-03
46	GO:0004470: malic enzyme activity	1.21E-03
47	GO:0004576: oligosaccharyl transferase activity	1.21E-03
48	GO:0010294: abscisic acid glucosyltransferase activity	1.54E-03
49	GO:0015145: monosaccharide transmembrane transporter activity	1.54E-03
50	GO:0008948: oxaloacetate decarboxylase activity	1.54E-03
51	GO:0035252: UDP-xylosyltransferase activity	1.89E-03
52	GO:0036402: proteasome-activating ATPase activity	1.89E-03
53	GO:0030976: thiamine pyrophosphate binding	1.89E-03
54	GO:0004559: alpha-mannosidase activity	2.27E-03
55	GO:0004124: cysteine synthase activity	2.27E-03
56	GO:0070300: phosphatidic acid binding	2.27E-03
57	GO:0004849: uridine kinase activity	2.27E-03
58	GO:0004012: phospholipid-translocating ATPase activity	2.27E-03
59	GO:0004620: phospholipase activity	2.67E-03
60	GO:0016831: carboxy-lyase activity	2.67E-03
61	GO:0009881: photoreceptor activity	2.67E-03
62	GO:0004525: ribonuclease III activity	3.09E-03
63	GO:0050897: cobalt ion binding	3.45E-03
64	GO:0008142: oxysterol binding	3.54E-03
65	GO:0071949: FAD binding	4.00E-03
66	GO:0004673: protein histidine kinase activity	4.99E-03
67	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	4.99E-03
68	GO:0004713: protein tyrosine kinase activity	4.99E-03
69	GO:0047372: acylglycerol lipase activity	5.52E-03
70	GO:0004022: alcohol dehydrogenase (NAD) activity	6.61E-03
71	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	6.61E-03
72	GO:0004175: endopeptidase activity	7.20E-03
73	GO:0015171: amino acid transmembrane transporter activity	7.25E-03
74	GO:0030552: cAMP binding	7.79E-03
75	GO:0030553: cGMP binding	7.79E-03
76	GO:0017025: TBP-class protein binding	7.79E-03
77	GO:0004672: protein kinase activity	7.95E-03
78	GO:0030246: carbohydrate binding	7.99E-03
79	GO:0005507: copper ion binding	8.70E-03
80	GO:0004674: protein serine/threonine kinase activity	8.93E-03
81	GO:0043424: protein histidine kinase binding	9.69E-03
82	GO:0005345: purine nucleobase transmembrane transporter activity	9.69E-03
83	GO:0005216: ion channel activity	9.69E-03
84	GO:0015079: potassium ion transmembrane transporter activity	9.69E-03
85	GO:0004707: MAP kinase activity	1.03E-02
86	GO:0030170: pyridoxal phosphate binding	1.30E-02
87	GO:0005451: monovalent cation:proton antiporter activity	1.39E-02
88	GO:0005249: voltage-gated potassium channel activity	1.39E-02
89	GO:0030551: cyclic nucleotide binding	1.39E-02
90	GO:0015144: carbohydrate transmembrane transporter activity	1.40E-02
91	GO:0015299: solute:proton antiporter activity	1.54E-02
92	GO:0005355: glucose transmembrane transporter activity	1.54E-02
93	GO:0010181: FMN binding	1.54E-02
94	GO:0005515: protein binding	1.58E-02
95	GO:0005351: sugar:proton symporter activity	1.58E-02
96	GO:0008017: microtubule binding	1.69E-02
97	GO:0005215: transporter activity	1.72E-02
98	GO:0004197: cysteine-type endopeptidase activity	1.78E-02
99	GO:0016887: ATPase activity	1.78E-02
100	GO:0015385: sodium:proton antiporter activity	1.87E-02
101	GO:0000156: phosphorelay response regulator activity	1.87E-02
102	GO:0008375: acetylglucosaminyltransferase activity	2.39E-02
103	GO:0000287: magnesium ion binding	2.46E-02
104	GO:0030247: polysaccharide binding	2.48E-02
105	GO:0005096: GTPase activator activity	2.77E-02
106	GO:0004222: metalloendopeptidase activity	2.87E-02
107	GO:0004497: monooxygenase activity	3.11E-02
108	GO:0003993: acid phosphatase activity	3.27E-02
109	GO:0051539: 4 iron, 4 sulfur cluster binding	3.47E-02
110	GO:0005516: calmodulin binding	3.51E-02
111	GO:0043621: protein self-association	4.01E-02
112	GO:0051287: NAD binding	4.34E-02
113	GO:0016298: lipase activity	4.80E-02
114	GO:0005506: iron ion binding	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	8.05E-08
2	GO:0016021: integral component of membrane	1.15E-07
3	GO:0005774: vacuolar membrane	2.64E-05
4	GO:0005783: endoplasmic reticulum	1.03E-04
5	GO:0010008: endosome membrane	1.38E-04
6	GO:0005794: Golgi apparatus	1.41E-04
7	GO:0045252: oxoglutarate dehydrogenase complex	1.73E-04
8	GO:0005849: mRNA cleavage factor complex	9.13E-04
9	GO:0005775: vacuolar lumen	9.13E-04
10	GO:0000323: lytic vacuole	9.13E-04
11	GO:0005776: autophagosome	1.21E-03
12	GO:0033179: proton-transporting V-type ATPase, V0 domain	1.21E-03
13	GO:0000813: ESCRT I complex	1.54E-03
14	GO:0016020: membrane	1.87E-03
15	GO:0031597: cytosolic proteasome complex	2.27E-03
16	GO:0009506: plasmodesma	2.32E-03
17	GO:0031595: nuclear proteasome complex	2.67E-03
18	GO:0030687: preribosome, large subunit precursor	2.67E-03
19	GO:0005779: integral component of peroxisomal membrane	3.54E-03
20	GO:0005773: vacuole	3.81E-03
21	GO:0008540: proteasome regulatory particle, base subcomplex	4.49E-03
22	GO:0005777: peroxisome	6.28E-03
23	GO:0016602: CCAAT-binding factor complex	6.61E-03
24	GO:0005795: Golgi stack	7.79E-03
25	GO:0005789: endoplasmic reticulum membrane	8.51E-03
26	GO:0005802: trans-Golgi network	1.04E-02
27	GO:0031410: cytoplasmic vesicle	1.10E-02
28	GO:0031965: nuclear membrane	1.62E-02
29	GO:0005778: peroxisomal membrane	2.04E-02
30	GO:0000786: nucleosome	3.06E-02
31	GO:0005768: endosome	4.43E-02
32	GO:0000502: proteasome complex	4.68E-02