gene detail

Gene description

TAIR ID: AT1G59720

Short description: Tetratricopeptide repeat (TPR)-like superfamily protein

Pathogen responsiveness: -1.69

General responsiveness: -0.43

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G144843

Wheat: No orthologous gene

GO biological process

chloroplast RNA processing, mRNA modification, mRNA processing, chloroplast RNA modification

GO cellular component

mitochondrion, chloroplast

GO molecular function

protein binding, RNA binding, zinc ion binding, endonuclease activity

Protein domain

Pfam	PF01535, PPR repeat
Pfam	PF14432, DYW family of nucleic acid deaminases
Pfam	PF13041, PPR repeat family

Metabolic pathway

PWY-3781: aerobic respiration (cytochrome c)

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G61850

Target:
none

Protein-protein interaction network

The number of partners (degree) is: 1

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE5686_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

6 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.62	5.49E-03
GSE40544	Col, WT, control	Col, WT, PstDC3000 AvrRpt2	-1.59	3.57E-04
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-1.93	4.77E-05
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 AvrRpt2	-1.77	1.33E-04
GSE40544	Col, Sid2, control	Col, Sid2, PstDC3000 EV	-1.62	7.79E-04
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-1.60	5.13E-12