co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G59720

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
3	GO:0070681: glutaminyl-tRNAGln biosynthesis via transamidation	0.00E+00
4	GO:0042254: ribosome biogenesis	1.77E-12
5	GO:0006412: translation	5.52E-11
6	GO:0015995: chlorophyll biosynthetic process	3.18E-06
7	GO:0016123: xanthophyll biosynthetic process	1.41E-05
8	GO:0009658: chloroplast organization	2.27E-05
9	GO:0009735: response to cytokinin	2.91E-05
10	GO:0042372: phylloquinone biosynthetic process	3.05E-05
11	GO:0032544: plastid translation	6.86E-05
12	GO:0010027: thylakoid membrane organization	7.16E-05
13	GO:1904966: positive regulation of vitamin E biosynthetic process	9.69E-05
14	GO:1904964: positive regulation of phytol biosynthetic process	9.69E-05
15	GO:0042371: vitamin K biosynthetic process	9.69E-05
16	GO:0010729: positive regulation of hydrogen peroxide biosynthetic process	9.69E-05
17	GO:1902326: positive regulation of chlorophyll biosynthetic process	2.28E-04
18	GO:0045493: xylan catabolic process	3.80E-04
19	GO:0015979: photosynthesis	4.29E-04
20	GO:0016117: carotenoid biosynthetic process	5.25E-04
21	GO:0006424: glutamyl-tRNA aminoacylation	5.46E-04
22	GO:0043572: plastid fission	5.46E-04
23	GO:2000122: negative regulation of stomatal complex development	7.26E-04
24	GO:0010037: response to carbon dioxide	7.26E-04
25	GO:0015976: carbon utilization	7.26E-04
26	GO:0009765: photosynthesis, light harvesting	7.26E-04
27	GO:0006633: fatty acid biosynthetic process	8.88E-04
28	GO:0032543: mitochondrial translation	9.17E-04
29	GO:0010236: plastoquinone biosynthetic process	9.17E-04
30	GO:0016120: carotene biosynthetic process	9.17E-04
31	GO:0006655: phosphatidylglycerol biosynthetic process	1.12E-03
32	GO:0009117: nucleotide metabolic process	1.12E-03
33	GO:0032973: amino acid export	1.12E-03
34	GO:0010411: xyloglucan metabolic process	1.24E-03
35	GO:0010555: response to mannitol	1.34E-03
36	GO:0010444: guard mother cell differentiation	1.57E-03
37	GO:0009395: phospholipid catabolic process	1.57E-03
38	GO:0009772: photosynthetic electron transport in photosystem II	1.57E-03
39	GO:0043090: amino acid import	1.57E-03
40	GO:0048564: photosystem I assembly	1.81E-03
41	GO:0009642: response to light intensity	1.81E-03
42	GO:0042255: ribosome assembly	1.81E-03
43	GO:0006353: DNA-templated transcription, termination	1.81E-03
44	GO:0030001: metal ion transport	1.96E-03
45	GO:0017004: cytochrome complex assembly	2.07E-03
46	GO:0010206: photosystem II repair	2.33E-03
47	GO:0080144: amino acid homeostasis	2.33E-03
48	GO:0006783: heme biosynthetic process	2.33E-03
49	GO:0006782: protoporphyrinogen IX biosynthetic process	2.90E-03
50	GO:0018119: peptidyl-cysteine S-nitrosylation	3.20E-03
51	GO:0006415: translational termination	3.20E-03
52	GO:0016024: CDP-diacylglycerol biosynthetic process	3.50E-03
53	GO:0050826: response to freezing	3.82E-03
54	GO:0010207: photosystem II assembly	4.15E-03
55	GO:0010020: chloroplast fission	4.15E-03
56	GO:0009793: embryo development ending in seed dormancy	4.29E-03
57	GO:0019344: cysteine biosynthetic process	5.19E-03
58	GO:0000027: ribosomal large subunit assembly	5.19E-03
59	GO:0009790: embryo development	6.13E-03
60	GO:0009306: protein secretion	7.10E-03
61	GO:0008033: tRNA processing	7.93E-03
62	GO:0000413: protein peptidyl-prolyl isomerization	7.93E-03
63	GO:0042335: cuticle development	7.93E-03
64	GO:0000302: response to reactive oxygen species	9.68E-03
65	GO:0002229: defense response to oomycetes	9.68E-03
66	GO:0016032: viral process	1.01E-02
67	GO:0032502: developmental process	1.01E-02
68	GO:0009627: systemic acquired resistance	1.36E-02
69	GO:0016311: dephosphorylation	1.46E-02
70	GO:0018298: protein-chromophore linkage	1.51E-02
71	GO:0009817: defense response to fungus, incompatible interaction	1.51E-02
72	GO:0045454: cell redox homeostasis	1.67E-02
73	GO:0010119: regulation of stomatal movement	1.68E-02
74	GO:0006869: lipid transport	1.83E-02
75	GO:0034599: cellular response to oxidative stress	1.85E-02
76	GO:0042742: defense response to bacterium	1.86E-02
77	GO:0042546: cell wall biogenesis	2.20E-02
78	GO:0006508: proteolysis	2.37E-02
79	GO:0009624: response to nematode	3.41E-02
80	GO:0042744: hydrogen peroxide catabolic process	4.38E-02
81	GO:0040008: regulation of growth	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0061634: alpha-D-xyloside xylohydrolase	0.00E+00
2	GO:0080176: xyloglucan 1,6-alpha-xylosidase activity	0.00E+00
3	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
4	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
5	GO:0009974: zeinoxanthin epsilon hydroxylase activity	0.00E+00
6	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
7	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
8	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
9	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
10	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
11	GO:0019843: rRNA binding	3.17E-14
12	GO:0003735: structural constituent of ribosome	8.30E-13
13	GO:0016851: magnesium chelatase activity	4.47E-06
14	GO:0051920: peroxiredoxin activity	3.05E-05
15	GO:0016209: antioxidant activity	5.40E-05
16	GO:0009374: biotin binding	9.69E-05
17	GO:0050567: glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity	9.69E-05
18	GO:0004853: uroporphyrinogen decarboxylase activity	9.69E-05
19	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	2.28E-04
20	GO:0004148: dihydrolipoyl dehydrogenase activity	3.80E-04
21	GO:0035529: NADH pyrophosphatase activity	5.46E-04
22	GO:0016149: translation release factor activity, codon specific	5.46E-04
23	GO:0043023: ribosomal large subunit binding	5.46E-04
24	GO:0008097: 5S rRNA binding	5.46E-04
25	GO:0009044: xylan 1,4-beta-xylosidase activity	7.26E-04
26	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	7.26E-04
27	GO:0046556: alpha-L-arabinofuranosidase activity	7.26E-04
28	GO:0004659: prenyltransferase activity	7.26E-04
29	GO:0016836: hydro-lyase activity	7.26E-04
30	GO:0043495: protein anchor	7.26E-04
31	GO:0003989: acetyl-CoA carboxylase activity	9.17E-04
32	GO:0008237: metallopeptidase activity	9.50E-04
33	GO:0016208: AMP binding	1.12E-03
34	GO:0016462: pyrophosphatase activity	1.12E-03
35	GO:0004130: cytochrome-c peroxidase activity	1.12E-03
36	GO:0004222: metalloendopeptidase activity	1.50E-03
37	GO:0019899: enzyme binding	1.57E-03
38	GO:0004601: peroxidase activity	1.71E-03
39	GO:0003993: acid phosphatase activity	1.80E-03
40	GO:0003747: translation release factor activity	2.33E-03
41	GO:0003690: double-stranded DNA binding	3.07E-03
42	GO:0004089: carbonate dehydratase activity	3.82E-03
43	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	5.39E-03
44	GO:0004176: ATP-dependent peptidase activity	5.93E-03
45	GO:0030570: pectate lyase activity	6.70E-03
46	GO:0022891: substrate-specific transmembrane transporter activity	6.70E-03
47	GO:0003727: single-stranded RNA binding	7.10E-03
48	GO:0016762: xyloglucan:xyloglucosyl transferase activity	9.68E-03
49	GO:0016597: amino acid binding	1.20E-02
50	GO:0016168: chlorophyll binding	1.30E-02
51	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.41E-02
52	GO:0008236: serine-type peptidase activity	1.46E-02
53	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.51E-02
54	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.39E-02
55	GO:0015171: amino acid transmembrane transporter activity	2.85E-02
56	GO:0008289: lipid binding	2.87E-02
57	GO:0004650: polygalacturonase activity	3.19E-02
58	GO:0016887: ATPase activity	3.19E-02
59	GO:0016746: transferase activity, transferring acyl groups	3.48E-02
60	GO:0000166: nucleotide binding	3.65E-02
61	GO:0016829: lyase activity	4.23E-02
62	GO:0004252: serine-type endopeptidase activity	4.30E-02
63	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0044391: ribosomal subunit	0.00E+00
3	GO:0009507: chloroplast	3.99E-34
4	GO:0009570: chloroplast stroma	1.31E-24
5	GO:0009941: chloroplast envelope	1.06E-23
6	GO:0009579: thylakoid	4.04E-15
7	GO:0009535: chloroplast thylakoid membrane	6.01E-15
8	GO:0005840: ribosome	8.05E-11
9	GO:0009543: chloroplast thylakoid lumen	8.28E-11
10	GO:0031977: thylakoid lumen	9.51E-11
11	GO:0009534: chloroplast thylakoid	2.74E-08
12	GO:0010007: magnesium chelatase complex	1.89E-06
13	GO:0031969: chloroplast membrane	3.73E-05
14	GO:0009536: plastid	5.38E-05
15	GO:0030956: glutamyl-tRNA(Gln) amidotransferase complex	9.69E-05
16	GO:0000311: plastid large ribosomal subunit	1.68E-04
17	GO:0048046: apoplast	2.03E-04
18	GO:0009505: plant-type cell wall	3.31E-04
19	GO:0042651: thylakoid membrane	3.41E-04
20	GO:0009654: photosystem II oxygen evolving complex	3.41E-04
21	GO:0009317: acetyl-CoA carboxylase complex	3.80E-04
22	GO:0019898: extrinsic component of membrane	6.99E-04
23	GO:0005618: cell wall	9.50E-04
24	GO:0022626: cytosolic ribosome	1.40E-03
25	GO:0009533: chloroplast stromal thylakoid	1.57E-03
26	GO:0016020: membrane	2.23E-03
27	GO:0030095: chloroplast photosystem II	4.15E-03
28	GO:0009706: chloroplast inner membrane	4.20E-03
29	GO:0005875: microtubule associated complex	4.83E-03
30	GO:0015935: small ribosomal subunit	5.93E-03
31	GO:0009523: photosystem II	9.23E-03
32	GO:0046658: anchored component of plasma membrane	9.59E-03
33	GO:0005778: peroxisomal membrane	1.16E-02
34	GO:0031225: anchored component of membrane	1.34E-02
35	GO:0022625: cytosolic large ribosomal subunit	1.47E-02
36	GO:0015934: large ribosomal subunit	1.68E-02
37	GO:0010287: plastoglobule	3.85E-02