co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G59720

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010068: protoderm histogenesis	0.00E+00
2	GO:1905177: tracheary element differentiation	0.00E+00
3	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
4	GO:0090706: specification of plant organ position	0.00E+00
5	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
6	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
7	GO:0017038: protein import	0.00E+00
8	GO:0009828: plant-type cell wall loosening	4.55E-05
9	GO:0045038: protein import into chloroplast thylakoid membrane	9.88E-05
10	GO:0016123: xanthophyll biosynthetic process	9.88E-05
11	GO:0080110: sporopollenin biosynthetic process	9.88E-05
12	GO:0009658: chloroplast organization	1.21E-04
13	GO:0006730: one-carbon metabolic process	1.81E-04
14	GO:0043266: regulation of potassium ion transport	3.11E-04
15	GO:0010480: microsporocyte differentiation	3.11E-04
16	GO:0010080: regulation of floral meristem growth	3.11E-04
17	GO:0042371: vitamin K biosynthetic process	3.11E-04
18	GO:2000021: regulation of ion homeostasis	3.11E-04
19	GO:0051247: positive regulation of protein metabolic process	3.11E-04
20	GO:1902458: positive regulation of stomatal opening	3.11E-04
21	GO:0015904: tetracycline transport	3.11E-04
22	GO:2000905: negative regulation of starch metabolic process	3.11E-04
23	GO:0010450: inflorescence meristem growth	3.11E-04
24	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	3.11E-04
25	GO:0009664: plant-type cell wall organization	3.60E-04
26	GO:0032502: developmental process	4.56E-04
27	GO:0010583: response to cyclopentenone	4.56E-04
28	GO:0009826: unidimensional cell growth	6.22E-04
29	GO:1903426: regulation of reactive oxygen species biosynthetic process	6.81E-04
30	GO:2000123: positive regulation of stomatal complex development	6.81E-04
31	GO:0010024: phytochromobilin biosynthetic process	6.81E-04
32	GO:0060359: response to ammonium ion	6.81E-04
33	GO:0048255: mRNA stabilization	6.81E-04
34	GO:0009773: photosynthetic electron transport in photosystem I	7.52E-04
35	GO:0009725: response to hormone	9.73E-04
36	GO:0010207: photosystem II assembly	1.09E-03
37	GO:0010623: programmed cell death involved in cell development	1.10E-03
38	GO:0090153: regulation of sphingolipid biosynthetic process	1.10E-03
39	GO:0043157: response to cation stress	1.10E-03
40	GO:0045165: cell fate commitment	1.10E-03
41	GO:0006788: heme oxidation	1.10E-03
42	GO:0010022: meristem determinacy	1.10E-03
43	GO:0048586: regulation of long-day photoperiodism, flowering	1.10E-03
44	GO:0040008: regulation of growth	1.48E-03
45	GO:0016556: mRNA modification	1.58E-03
46	GO:0046739: transport of virus in multicellular host	1.58E-03
47	GO:0043572: plastid fission	1.58E-03
48	GO:2001141: regulation of RNA biosynthetic process	1.58E-03
49	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.58E-03
50	GO:0019048: modulation by virus of host morphology or physiology	1.58E-03
51	GO:0031048: chromatin silencing by small RNA	1.58E-03
52	GO:1990019: protein storage vacuole organization	1.58E-03
53	GO:0048645: animal organ formation	1.58E-03
54	GO:0030245: cellulose catabolic process	1.99E-03
55	GO:2000038: regulation of stomatal complex development	2.12E-03
56	GO:0010109: regulation of photosynthesis	2.12E-03
57	GO:0009765: photosynthesis, light harvesting	2.12E-03
58	GO:2000306: positive regulation of photomorphogenesis	2.12E-03
59	GO:0051567: histone H3-K9 methylation	2.12E-03
60	GO:0010508: positive regulation of autophagy	2.12E-03
61	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.17E-03
62	GO:0010584: pollen exine formation	2.36E-03
63	GO:0046907: intracellular transport	2.71E-03
64	GO:0010236: plastoquinone biosynthetic process	2.71E-03
65	GO:1902183: regulation of shoot apical meristem development	2.71E-03
66	GO:0010158: abaxial cell fate specification	2.71E-03
67	GO:0010375: stomatal complex patterning	2.71E-03
68	GO:0016120: carotene biosynthetic process	2.71E-03
69	GO:0016458: gene silencing	3.35E-03
70	GO:0009959: negative gravitropism	3.35E-03
71	GO:0006555: methionine metabolic process	3.35E-03
72	GO:0016554: cytidine to uridine editing	3.35E-03
73	GO:0032973: amino acid export	3.35E-03
74	GO:0000741: karyogamy	3.35E-03
75	GO:0016032: viral process	3.92E-03
76	GO:0006458: 'de novo' protein folding	4.03E-03
77	GO:0017148: negative regulation of translation	4.03E-03
78	GO:0080086: stamen filament development	4.03E-03
79	GO:0042026: protein refolding	4.03E-03
80	GO:0042372: phylloquinone biosynthetic process	4.03E-03
81	GO:0010444: guard mother cell differentiation	4.76E-03
82	GO:0006955: immune response	4.76E-03
83	GO:0009772: photosynthetic electron transport in photosystem II	4.76E-03
84	GO:0043090: amino acid import	4.76E-03
85	GO:0048437: floral organ development	4.76E-03
86	GO:0010027: thylakoid membrane organization	5.31E-03
87	GO:0009690: cytokinin metabolic process	5.53E-03
88	GO:0006605: protein targeting	5.53E-03
89	GO:2000070: regulation of response to water deprivation	5.53E-03
90	GO:0048564: photosystem I assembly	5.53E-03
91	GO:0042255: ribosome assembly	5.53E-03
92	GO:0046620: regulation of organ growth	5.53E-03
93	GO:0006353: DNA-templated transcription, termination	5.53E-03
94	GO:0071555: cell wall organization	5.80E-03
95	GO:0010093: specification of floral organ identity	6.33E-03
96	GO:0071482: cellular response to light stimulus	6.33E-03
97	GO:0015996: chlorophyll catabolic process	6.33E-03
98	GO:0007186: G-protein coupled receptor signaling pathway	6.33E-03
99	GO:0010497: plasmodesmata-mediated intercellular transport	6.33E-03
100	GO:0009657: plastid organization	6.33E-03
101	GO:0080144: amino acid homeostasis	7.19E-03
102	GO:2000024: regulation of leaf development	7.19E-03
103	GO:0000373: Group II intron splicing	7.19E-03
104	GO:0006098: pentose-phosphate shunt	7.19E-03
105	GO:0009733: response to auxin	7.28E-03
106	GO:0009638: phototropism	8.07E-03
107	GO:0035999: tetrahydrofolate interconversion	8.07E-03
108	GO:0009086: methionine biosynthetic process	8.07E-03
109	GO:1900865: chloroplast RNA modification	8.07E-03
110	GO:0030422: production of siRNA involved in RNA interference	9.00E-03
111	GO:0045036: protein targeting to chloroplast	9.00E-03
112	GO:0009641: shade avoidance	9.00E-03
113	GO:0006949: syncytium formation	9.00E-03
114	GO:0009299: mRNA transcription	9.00E-03
115	GO:0009073: aromatic amino acid family biosynthetic process	9.96E-03
116	GO:0006352: DNA-templated transcription, initiation	9.96E-03
117	GO:0048229: gametophyte development	9.96E-03
118	GO:0019684: photosynthesis, light reaction	9.96E-03
119	GO:0009089: lysine biosynthetic process via diaminopimelate	9.96E-03
120	GO:0006415: translational termination	9.96E-03
121	GO:0006839: mitochondrial transport	1.00E-02
122	GO:0010582: floral meristem determinacy	1.10E-02
123	GO:0045037: protein import into chloroplast stroma	1.10E-02
124	GO:0010628: positive regulation of gene expression	1.20E-02
125	GO:0050826: response to freezing	1.20E-02
126	GO:0010075: regulation of meristem growth	1.20E-02
127	GO:0006094: gluconeogenesis	1.20E-02
128	GO:0010588: cotyledon vascular tissue pattern formation	1.20E-02
129	GO:0030048: actin filament-based movement	1.20E-02
130	GO:0009934: regulation of meristem structural organization	1.31E-02
131	GO:0010020: chloroplast fission	1.31E-02
132	GO:0009933: meristem structural organization	1.31E-02
133	GO:0010030: positive regulation of seed germination	1.42E-02
134	GO:0009944: polarity specification of adaxial/abaxial axis	1.65E-02
135	GO:0009909: regulation of flower development	1.70E-02
136	GO:0019953: sexual reproduction	1.77E-02
137	GO:0006096: glycolytic process	1.82E-02
138	GO:0009416: response to light stimulus	1.84E-02
139	GO:0048367: shoot system development	1.88E-02
140	GO:0048316: seed development	1.88E-02
141	GO:0016998: cell wall macromolecule catabolic process	1.89E-02
142	GO:0010431: seed maturation	1.89E-02
143	GO:0061077: chaperone-mediated protein folding	1.89E-02
144	GO:0006306: DNA methylation	1.89E-02
145	GO:0009740: gibberellic acid mediated signaling pathway	2.06E-02
146	GO:0015979: photosynthesis	2.16E-02
147	GO:0010089: xylem development	2.27E-02
148	GO:0009742: brassinosteroid mediated signaling pathway	2.32E-02
149	GO:0016117: carotenoid biosynthetic process	2.41E-02
150	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.41E-02
151	GO:0051028: mRNA transport	2.41E-02
152	GO:0080022: primary root development	2.55E-02
153	GO:0008033: tRNA processing	2.55E-02
154	GO:0010087: phloem or xylem histogenesis	2.55E-02
155	GO:0048653: anther development	2.55E-02
156	GO:0042631: cellular response to water deprivation	2.55E-02
157	GO:0042335: cuticle development	2.55E-02
158	GO:0010305: leaf vascular tissue pattern formation	2.68E-02
159	GO:0010197: polar nucleus fusion	2.68E-02
160	GO:0010182: sugar mediated signaling pathway	2.68E-02
161	GO:0048868: pollen tube development	2.68E-02
162	GO:0006342: chromatin silencing	2.68E-02
163	GO:0010154: fruit development	2.68E-02
164	GO:0007018: microtubule-based movement	2.83E-02
165	GO:0009646: response to absence of light	2.83E-02
166	GO:0016042: lipid catabolic process	2.87E-02
167	GO:0009630: gravitropism	3.27E-02
168	GO:0010090: trichome morphogenesis	3.42E-02
169	GO:0005975: carbohydrate metabolic process	3.60E-02
170	GO:0007267: cell-cell signaling	3.73E-02
171	GO:0009451: RNA modification	3.87E-02
172	GO:0051607: defense response to virus	3.89E-02
173	GO:0001666: response to hypoxia	4.05E-02
174	GO:0009911: positive regulation of flower development	4.05E-02
175	GO:0010029: regulation of seed germination	4.22E-02
176	GO:0009816: defense response to bacterium, incompatible interaction	4.22E-02
177	GO:0007166: cell surface receptor signaling pathway	4.32E-02
178	GO:0009627: systemic acquired resistance	4.38E-02
179	GO:0009734: auxin-activated signaling pathway	4.54E-02

Rank	GO Term	Adjusted P value
1	GO:0015267: channel activity	0.00E+00
2	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
3	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
4	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	3.11E-04
5	GO:0008158: hedgehog receptor activity	3.11E-04
6	GO:0050139: nicotinate-N-glucosyltransferase activity	3.11E-04
7	GO:0042834: peptidoglycan binding	3.11E-04
8	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	6.81E-04
9	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	6.81E-04
10	GO:0043425: bHLH transcription factor binding	6.81E-04
11	GO:0008493: tetracycline transporter activity	6.81E-04
12	GO:0052692: raffinose alpha-galactosidase activity	1.10E-03
13	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.10E-03
14	GO:0004557: alpha-galactosidase activity	1.10E-03
15	GO:0016149: translation release factor activity, codon specific	1.58E-03
16	GO:0043023: ribosomal large subunit binding	1.58E-03
17	GO:0001872: (1->3)-beta-D-glucan binding	1.58E-03
18	GO:0035197: siRNA binding	1.58E-03
19	GO:0004392: heme oxygenase (decyclizing) activity	2.12E-03
20	GO:0004659: prenyltransferase activity	2.12E-03
21	GO:0001053: plastid sigma factor activity	2.12E-03
22	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.12E-03
23	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.12E-03
24	GO:0016987: sigma factor activity	2.12E-03
25	GO:0008810: cellulase activity	2.17E-03
26	GO:0016773: phosphotransferase activity, alcohol group as acceptor	2.71E-03
27	GO:0050662: coenzyme binding	3.20E-03
28	GO:0004462: lactoylglutathione lyase activity	3.35E-03
29	GO:0008200: ion channel inhibitor activity	3.35E-03
30	GO:0004332: fructose-bisphosphate aldolase activity	3.35E-03
31	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	4.03E-03
32	GO:0003747: translation release factor activity	7.19E-03
33	GO:0004222: metalloendopeptidase activity	7.65E-03
34	GO:0030955: potassium ion binding	8.07E-03
35	GO:0004743: pyruvate kinase activity	8.07E-03
36	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	8.54E-03
37	GO:0004519: endonuclease activity	8.81E-03
38	GO:0044183: protein binding involved in protein folding	9.96E-03
39	GO:0004521: endoribonuclease activity	1.10E-02
40	GO:0004089: carbonate dehydratase activity	1.20E-02
41	GO:0008266: poly(U) RNA binding	1.31E-02
42	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.31E-02
43	GO:0003774: motor activity	1.31E-02
44	GO:0016788: hydrolase activity, acting on ester bonds	1.42E-02
45	GO:0008146: sulfotransferase activity	1.42E-02
46	GO:0003690: double-stranded DNA binding	1.59E-02
47	GO:0005528: FK506 binding	1.65E-02
48	GO:0003777: microtubule motor activity	1.70E-02
49	GO:0005345: purine nucleobase transmembrane transporter activity	1.77E-02
50	GO:0004176: ATP-dependent peptidase activity	1.89E-02
51	GO:0033612: receptor serine/threonine kinase binding	1.89E-02
52	GO:0052689: carboxylic ester hydrolase activity	2.07E-02
53	GO:0030570: pectate lyase activity	2.14E-02
54	GO:0051082: unfolded protein binding	2.19E-02
55	GO:0003727: single-stranded RNA binding	2.27E-02
56	GO:0004871: signal transducer activity	2.43E-02
57	GO:0005199: structural constituent of cell wall	2.68E-02
58	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.82E-02
59	GO:0046983: protein dimerization activity	2.91E-02
60	GO:0016829: lyase activity	2.97E-02
61	GO:0019901: protein kinase binding	2.97E-02
62	GO:0004872: receptor activity	2.97E-02
63	GO:0048038: quinone binding	3.12E-02
64	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.53E-02
65	GO:0005200: structural constituent of cytoskeleton	3.73E-02
66	GO:0008237: metallopeptidase activity	3.73E-02
67	GO:0016597: amino acid binding	3.89E-02
68	GO:0008017: microtubule binding	3.96E-02
69	GO:0030247: polysaccharide binding	4.55E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	7.40E-07
2	GO:0009570: chloroplast stroma	2.42E-04
3	GO:0009535: chloroplast thylakoid membrane	4.61E-04
4	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	4.73E-04
5	GO:0046658: anchored component of plasma membrane	5.03E-04
6	GO:0080085: signal recognition particle, chloroplast targeting	6.81E-04
7	GO:0009528: plastid inner membrane	1.10E-03
8	GO:0005719: nuclear euchromatin	1.58E-03
9	GO:0009532: plastid stroma	1.82E-03
10	GO:0009527: plastid outer membrane	2.12E-03
11	GO:0031225: anchored component of membrane	3.47E-03
12	GO:0005886: plasma membrane	4.48E-03
13	GO:0010319: stromule	4.73E-03
14	GO:0030529: intracellular ribonucleoprotein complex	5.31E-03
15	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	6.33E-03
16	GO:0009707: chloroplast outer membrane	6.93E-03
17	GO:0015030: Cajal body	8.07E-03
18	GO:0009941: chloroplast envelope	8.85E-03
19	GO:0016459: myosin complex	9.00E-03
20	GO:0009505: plant-type cell wall	9.01E-03
21	GO:0005578: proteinaceous extracellular matrix	1.20E-02
22	GO:0005576: extracellular region	1.74E-02
23	GO:0005874: microtubule	1.75E-02
24	GO:0042651: thylakoid membrane	1.77E-02
25	GO:0009654: photosystem II oxygen evolving complex	1.77E-02
26	GO:0031969: chloroplast membrane	1.83E-02
27	GO:0015629: actin cytoskeleton	2.14E-02
28	GO:0005871: kinesin complex	2.41E-02
29	GO:0005654: nucleoplasm	2.67E-02
30	GO:0009543: chloroplast thylakoid lumen	2.75E-02
31	GO:0005623: cell	2.82E-02
32	GO:0019898: extrinsic component of membrane	2.97E-02
33	GO:0043231: intracellular membrane-bounded organelle	3.36E-02
34	GO:0005643: nuclear pore	4.89E-02