GO Enrichment Analysis of Co-expressed Genes with
AT1G59720
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0010059: positive regulation of atrichoblast fate specification | 0.00E+00 |
| 2 | GO:0044249: cellular biosynthetic process | 0.00E+00 |
| 3 | GO:0002103: endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) | 0.00E+00 |
| 4 | GO:0090071: negative regulation of ribosome biogenesis | 0.00E+00 |
| 5 | GO:1901259: chloroplast rRNA processing | 3.45E-07 |
| 6 | GO:0009451: RNA modification | 1.00E-06 |
| 7 | GO:0009657: plastid organization | 1.29E-06 |
| 8 | GO:0010239: chloroplast mRNA processing | 6.84E-06 |
| 9 | GO:0010063: positive regulation of trichoblast fate specification | 1.23E-04 |
| 10 | GO:0010729: positive regulation of hydrogen peroxide biosynthetic process | 1.23E-04 |
| 11 | GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process | 1.23E-04 |
| 12 | GO:0019478: D-amino acid catabolic process | 1.23E-04 |
| 13 | GO:0018026: peptidyl-lysine monomethylation | 2.86E-04 |
| 14 | GO:1904143: positive regulation of carotenoid biosynthetic process | 2.86E-04 |
| 15 | GO:1902326: positive regulation of chlorophyll biosynthetic process | 2.86E-04 |
| 16 | GO:0006954: inflammatory response | 4.72E-04 |
| 17 | GO:0006518: peptide metabolic process | 4.72E-04 |
| 18 | GO:0005977: glycogen metabolic process | 4.72E-04 |
| 19 | GO:0010071: root meristem specification | 6.76E-04 |
| 20 | GO:0051513: regulation of monopolar cell growth | 6.76E-04 |
| 21 | GO:0016556: mRNA modification | 6.76E-04 |
| 22 | GO:0010021: amylopectin biosynthetic process | 8.97E-04 |
| 23 | GO:0042274: ribosomal small subunit biogenesis | 8.97E-04 |
| 24 | GO:0051322: anaphase | 8.97E-04 |
| 25 | GO:0048497: maintenance of floral organ identity | 1.13E-03 |
| 26 | GO:0009107: lipoate biosynthetic process | 1.13E-03 |
| 27 | GO:0009616: virus induced gene silencing | 1.13E-03 |
| 28 | GO:0009913: epidermal cell differentiation | 1.39E-03 |
| 29 | GO:0042793: transcription from plastid promoter | 1.39E-03 |
| 30 | GO:0050665: hydrogen peroxide biosynthetic process | 1.39E-03 |
| 31 | GO:0035194: posttranscriptional gene silencing by RNA | 1.39E-03 |
| 32 | GO:0006458: 'de novo' protein folding | 1.66E-03 |
| 33 | GO:0017148: negative regulation of translation | 1.66E-03 |
| 34 | GO:0009942: longitudinal axis specification | 1.66E-03 |
| 35 | GO:0009854: oxidative photosynthetic carbon pathway | 1.66E-03 |
| 36 | GO:0019509: L-methionine salvage from methylthioadenosine | 1.66E-03 |
| 37 | GO:0042026: protein refolding | 1.66E-03 |
| 38 | GO:0048528: post-embryonic root development | 1.95E-03 |
| 39 | GO:0048437: floral organ development | 1.95E-03 |
| 40 | GO:0006353: DNA-templated transcription, termination | 2.26E-03 |
| 41 | GO:0010204: defense response signaling pathway, resistance gene-independent | 2.58E-03 |
| 42 | GO:0007389: pattern specification process | 2.58E-03 |
| 43 | GO:0009658: chloroplast organization | 2.60E-03 |
| 44 | GO:0000373: Group II intron splicing | 2.91E-03 |
| 45 | GO:0000902: cell morphogenesis | 2.91E-03 |
| 46 | GO:0006535: cysteine biosynthetic process from serine | 3.62E-03 |
| 47 | GO:0006259: DNA metabolic process | 3.62E-03 |
| 48 | GO:0019538: protein metabolic process | 3.62E-03 |
| 49 | GO:0006265: DNA topological change | 4.00E-03 |
| 50 | GO:0009073: aromatic amino acid family biosynthetic process | 4.00E-03 |
| 51 | GO:0045037: protein import into chloroplast stroma | 4.39E-03 |
| 52 | GO:0009691: cytokinin biosynthetic process | 4.79E-03 |
| 53 | GO:0010207: photosystem II assembly | 5.20E-03 |
| 54 | GO:0071732: cellular response to nitric oxide | 5.63E-03 |
| 55 | GO:0019344: cysteine biosynthetic process | 6.51E-03 |
| 56 | GO:0061077: chaperone-mediated protein folding | 7.45E-03 |
| 57 | GO:0016226: iron-sulfur cluster assembly | 7.93E-03 |
| 58 | GO:0006730: one-carbon metabolic process | 7.93E-03 |
| 59 | GO:0071369: cellular response to ethylene stimulus | 8.43E-03 |
| 60 | GO:0009831: plant-type cell wall modification involved in multidimensional cell growth | 8.43E-03 |
| 61 | GO:0009790: embryo development | 8.52E-03 |
| 62 | GO:0042127: regulation of cell proliferation | 8.93E-03 |
| 63 | GO:0008033: tRNA processing | 9.99E-03 |
| 64 | GO:0000226: microtubule cytoskeleton organization | 9.99E-03 |
| 65 | GO:0006662: glycerol ether metabolic process | 1.05E-02 |
| 66 | GO:0048868: pollen tube development | 1.05E-02 |
| 67 | GO:0009741: response to brassinosteroid | 1.05E-02 |
| 68 | GO:0010305: leaf vascular tissue pattern formation | 1.05E-02 |
| 69 | GO:0007059: chromosome segregation | 1.11E-02 |
| 70 | GO:0009646: response to absence of light | 1.11E-02 |
| 71 | GO:0048825: cotyledon development | 1.16E-02 |
| 72 | GO:0019252: starch biosynthetic process | 1.16E-02 |
| 73 | GO:0009851: auxin biosynthetic process | 1.16E-02 |
| 74 | GO:0002229: defense response to oomycetes | 1.22E-02 |
| 75 | GO:0010583: response to cyclopentenone | 1.28E-02 |
| 76 | GO:0032502: developmental process | 1.28E-02 |
| 77 | GO:0071281: cellular response to iron ion | 1.34E-02 |
| 78 | GO:0006464: cellular protein modification process | 1.40E-02 |
| 79 | GO:0009828: plant-type cell wall loosening | 1.40E-02 |
| 80 | GO:0010252: auxin homeostasis | 1.40E-02 |
| 81 | GO:0000910: cytokinesis | 1.52E-02 |
| 82 | GO:0010027: thylakoid membrane organization | 1.58E-02 |
| 83 | GO:0048481: plant ovule development | 1.91E-02 |
| 84 | GO:0000160: phosphorelay signal transduction system | 1.98E-02 |
| 85 | GO:0010200: response to chitin | 2.01E-02 |
| 86 | GO:0009407: toxin catabolic process | 2.05E-02 |
| 87 | GO:0034599: cellular response to oxidative stress | 2.34E-02 |
| 88 | GO:0009793: embryo development ending in seed dormancy | 2.55E-02 |
| 89 | GO:0008283: cell proliferation | 2.71E-02 |
| 90 | GO:0009926: auxin polar transport | 2.71E-02 |
| 91 | GO:0051707: response to other organism | 2.71E-02 |
| 92 | GO:0032259: methylation | 2.75E-02 |
| 93 | GO:0009664: plant-type cell wall organization | 3.19E-02 |
| 94 | GO:0009736: cytokinin-activated signaling pathway | 3.35E-02 |
| 95 | GO:0048367: shoot system development | 3.86E-02 |
| 96 | GO:0048316: seed development | 3.86E-02 |
| 97 | GO:0009734: auxin-activated signaling pathway | 4.03E-02 |
| 98 | GO:0009553: embryo sac development | 4.22E-02 |
| 99 | GO:0006396: RNA processing | 4.40E-02 |
| 100 | GO:0009742: brassinosteroid mediated signaling pathway | 4.49E-02 |
| 101 | GO:0005975: carbohydrate metabolic process | 4.72E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046523: S-methyl-5-thioribose-1-phosphate isomerase activity | 0.00E+00 |
| 2 | GO:0004519: endonuclease activity | 1.93E-06 |
| 3 | GO:0019843: rRNA binding | 1.18E-04 |
| 4 | GO:0052381: tRNA dimethylallyltransferase activity | 1.23E-04 |
| 5 | GO:0019156: isoamylase activity | 2.86E-04 |
| 6 | GO:0017118: lipoyltransferase activity | 2.86E-04 |
| 7 | GO:0004326: tetrahydrofolylpolyglutamate synthase activity | 2.86E-04 |
| 8 | GO:0016415: octanoyltransferase activity | 2.86E-04 |
| 9 | GO:0004047: aminomethyltransferase activity | 2.86E-04 |
| 10 | GO:0003723: RNA binding | 3.42E-04 |
| 11 | GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity | 6.76E-04 |
| 12 | GO:0043023: ribosomal large subunit binding | 6.76E-04 |
| 13 | GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity | 6.76E-04 |
| 14 | GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity | 6.76E-04 |
| 15 | GO:0008891: glycolate oxidase activity | 8.97E-04 |
| 16 | GO:0016279: protein-lysine N-methyltransferase activity | 8.97E-04 |
| 17 | GO:0070696: transmembrane receptor protein serine/threonine kinase binding | 1.13E-03 |
| 18 | GO:0004556: alpha-amylase activity | 1.39E-03 |
| 19 | GO:0080030: methyl indole-3-acetate esterase activity | 1.39E-03 |
| 20 | GO:0004124: cysteine synthase activity | 1.66E-03 |
| 21 | GO:0008173: RNA methyltransferase activity | 2.58E-03 |
| 22 | GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity | 2.58E-03 |
| 23 | GO:0003724: RNA helicase activity | 2.58E-03 |
| 24 | GO:0016788: hydrolase activity, acting on ester bonds | 2.66E-03 |
| 25 | GO:0009672: auxin:proton symporter activity | 3.26E-03 |
| 26 | GO:0044183: protein binding involved in protein folding | 4.00E-03 |
| 27 | GO:0003690: double-stranded DNA binding | 4.25E-03 |
| 28 | GO:0004565: beta-galactosidase activity | 4.79E-03 |
| 29 | GO:0010329: auxin efflux transmembrane transporter activity | 4.79E-03 |
| 30 | GO:0003887: DNA-directed DNA polymerase activity | 6.06E-03 |
| 31 | GO:0043424: protein histidine kinase binding | 6.98E-03 |
| 32 | GO:0003727: single-stranded RNA binding | 8.93E-03 |
| 33 | GO:0047134: protein-disulfide reductase activity | 9.45E-03 |
| 34 | GO:0004791: thioredoxin-disulfide reductase activity | 1.11E-02 |
| 35 | GO:0016853: isomerase activity | 1.11E-02 |
| 36 | GO:0010181: FMN binding | 1.11E-02 |
| 37 | GO:0004518: nuclease activity | 1.28E-02 |
| 38 | GO:0000156: phosphorelay response regulator activity | 1.34E-02 |
| 39 | GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor | 1.34E-02 |
| 40 | GO:0003684: damaged DNA binding | 1.40E-02 |
| 41 | GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity | 1.46E-02 |
| 42 | GO:0008168: methyltransferase activity | 1.51E-02 |
| 43 | GO:0004601: peroxidase activity | 1.56E-02 |
| 44 | GO:0004222: metalloendopeptidase activity | 2.05E-02 |
| 45 | GO:0003746: translation elongation factor activity | 2.26E-02 |
| 46 | GO:0003697: single-stranded DNA binding | 2.26E-02 |
| 47 | GO:0004364: glutathione transferase activity | 2.63E-02 |
| 48 | GO:0043621: protein self-association | 2.87E-02 |
| 49 | GO:0003899: DNA-directed 5'-3' RNA polymerase activity | 3.35E-02 |
| 50 | GO:0008234: cysteine-type peptidase activity | 3.60E-02 |
| 51 | GO:0051082: unfolded protein binding | 4.31E-02 |
| 52 | GO:0015035: protein disulfide oxidoreductase activity | 4.40E-02 |
| 53 | GO:0008026: ATP-dependent helicase activity | 4.49E-02 |
| 54 | GO:0004386: helicase activity | 4.58E-02 |