gene detail

Gene description

TAIR ID: AT1G53230

Short description: TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3

Pathogen responsiveness: -0.50

General responsiveness: 1.26

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

regulation of transcription, DNA-templated, leaf morphogenesis, response to auxin, transcription, leaf development, positive regulation of development, heterochronic, cell differentiation

GO cellular component

nucleus

GO molecular function

transcription factor activity, sequence-specific DNA binding, DNA binding

Protein domain

Pfam	PF03634, TCP family transcription factor

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G13790, AT2G02820, AT1G24260, AT5G41315, AT5G61850, AT2G43010, AT1G14350

Target:
AT2G37630, AT1G04240

Protein-protein interaction network

The number of partners (degree) is: 38 (Top5%)

click to view PPI network

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE26679_EDR1_GC  view

Differentially expressed condition

15 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE26679	Col, WT, GC 0 h	Col, WT, GC 18 h	1.57	2.49E-08
GSE26679	Col, WT, GC 0 h	Col, WT, GC 36 h	2.05	1.79E-10
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 18 h	1.71	5.13E-09
GSE26679	Col, edr1, GC 0 h	Col, edr1, GC 36 h	2.45	4.24E-12
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.93	1.47E-04
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-2.87	2.77E-08
GSE56094	Col, WT, control 10 h	Col, WT, PstDC3000 10 h	-2.92	2.08E-22
GSE56094	Col, WT, control 10 h	Col, WT, hrpA- 10 h	-1.59	1.30E-08
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	-2.00	3.17E-13
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.71	1.29E-10
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	-1.52	4.18E-09
GSE56094	Col, WT, control 6 h	Col, WT, PstDC3000 6 h	-1.56	1.94E-08
GSE56094	Col, WT, control 8 h	Col, WT, PstDC3000 8 h	-1.93	2.16E-12
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	-1.61	1.95E-09
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	-1.67	9.19E-07