co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G53230

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009583: detection of light stimulus	0.00E+00
2	GO:0036172: thiamine salvage	0.00E+00
3	GO:0071000: response to magnetism	0.00E+00
4	GO:0046460: neutral lipid biosynthetic process	0.00E+00
5	GO:0032928: regulation of superoxide anion generation	0.00E+00
6	GO:0010117: photoprotection	3.83E-06
7	GO:0072387: flavin adenine dinucleotide metabolic process	4.45E-05
8	GO:0048438: floral whorl development	4.45E-05
9	GO:0010343: singlet oxygen-mediated programmed cell death	1.10E-04
10	GO:1901529: positive regulation of anion channel activity	1.10E-04
11	GO:0010617: circadian regulation of calcium ion oscillation	1.10E-04
12	GO:0099402: plant organ development	1.10E-04
13	GO:0016122: xanthophyll metabolic process	1.10E-04
14	GO:1902448: positive regulation of shade avoidance	1.89E-04
15	GO:1901672: positive regulation of systemic acquired resistance	1.89E-04
16	GO:0009961: response to 1-aminocyclopropane-1-carboxylic acid	1.89E-04
17	GO:0010476: gibberellin mediated signaling pathway	1.89E-04
18	GO:0010325: raffinose family oligosaccharide biosynthetic process	1.89E-04
19	GO:0000394: RNA splicing, via endonucleolytic cleavage and ligation	1.89E-04
20	GO:1901332: negative regulation of lateral root development	2.78E-04
21	GO:0009939: positive regulation of gibberellic acid mediated signaling pathway	3.73E-04
22	GO:0031935: regulation of chromatin silencing	3.73E-04
23	GO:0051567: histone H3-K9 methylation	3.73E-04
24	GO:0006749: glutathione metabolic process	3.73E-04
25	GO:1902347: response to strigolactone	3.73E-04
26	GO:0034613: cellular protein localization	3.73E-04
27	GO:0046283: anthocyanin-containing compound metabolic process	4.75E-04
28	GO:0009229: thiamine diphosphate biosynthetic process	4.75E-04
29	GO:0031053: primary miRNA processing	5.82E-04
30	GO:1901371: regulation of leaf morphogenesis	5.82E-04
31	GO:0000741: karyogamy	5.82E-04
32	GO:0009228: thiamine biosynthetic process	5.82E-04
33	GO:0060918: auxin transport	5.82E-04
34	GO:0042793: transcription from plastid promoter	5.82E-04
35	GO:0016458: gene silencing	5.82E-04
36	GO:0016070: RNA metabolic process	5.82E-04
37	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	6.94E-04
38	GO:0034389: lipid particle organization	6.94E-04
39	GO:0010076: maintenance of floral meristem identity	6.94E-04
40	GO:0048444: floral organ morphogenesis	6.94E-04
41	GO:0010310: regulation of hydrogen peroxide metabolic process	6.94E-04
42	GO:0080111: DNA demethylation	8.11E-04
43	GO:0051510: regulation of unidimensional cell growth	8.11E-04
44	GO:0045292: mRNA cis splicing, via spliceosome	9.32E-04
45	GO:0010928: regulation of auxin mediated signaling pathway	9.32E-04
46	GO:0009704: de-etiolation	9.32E-04
47	GO:0010100: negative regulation of photomorphogenesis	1.06E-03
48	GO:0098656: anion transmembrane transport	1.19E-03
49	GO:0019432: triglyceride biosynthetic process	1.19E-03
50	GO:0009056: catabolic process	1.19E-03
51	GO:0009638: phototropism	1.32E-03
52	GO:1900426: positive regulation of defense response to bacterium	1.32E-03
53	GO:0009688: abscisic acid biosynthetic process	1.47E-03
54	GO:0045036: protein targeting to chloroplast	1.47E-03
55	GO:0010582: floral meristem determinacy	1.77E-03
56	GO:0009785: blue light signaling pathway	1.92E-03
57	GO:0010075: regulation of meristem growth	1.92E-03
58	GO:0009266: response to temperature stimulus	2.09E-03
59	GO:0006071: glycerol metabolic process	2.42E-03
60	GO:2000377: regulation of reactive oxygen species metabolic process	2.60E-03
61	GO:0006306: DNA methylation	2.96E-03
62	GO:0010051: xylem and phloem pattern formation	3.93E-03
63	GO:0010087: phloem or xylem histogenesis	3.93E-03
64	GO:0010118: stomatal movement	3.93E-03
65	GO:0009958: positive gravitropism	4.14E-03
66	GO:0010197: polar nucleus fusion	4.14E-03
67	GO:0009646: response to absence of light	4.35E-03
68	GO:0042752: regulation of circadian rhythm	4.35E-03
69	GO:0007264: small GTPase mediated signal transduction	4.99E-03
70	GO:0018298: protein-chromophore linkage	7.39E-03
71	GO:0009407: toxin catabolic process	7.91E-03
72	GO:0010218: response to far red light	7.91E-03
73	GO:0009910: negative regulation of flower development	8.18E-03
74	GO:0009637: response to blue light	8.71E-03
75	GO:0006839: mitochondrial transport	9.55E-03
76	GO:0006897: endocytosis	9.83E-03
77	GO:0009640: photomorphogenesis	1.04E-02
78	GO:0010114: response to red light	1.04E-02
79	GO:0009644: response to high light intensity	1.10E-02
80	GO:0009636: response to toxic substance	1.13E-02
81	GO:0009965: leaf morphogenesis	1.13E-02
82	GO:0000165: MAPK cascade	1.19E-02
83	GO:0009585: red, far-red light phototransduction	1.28E-02
84	GO:0006417: regulation of translation	1.38E-02
85	GO:0045893: positive regulation of transcription, DNA-templated	1.51E-02
86	GO:0006396: RNA processing	1.68E-02
87	GO:0000398: mRNA splicing, via spliceosome	1.83E-02
88	GO:0009058: biosynthetic process	2.01E-02
89	GO:0007623: circadian rhythm	2.43E-02
90	GO:0009451: RNA modification	2.47E-02
91	GO:0009739: response to gibberellin	2.63E-02
92	GO:0006355: regulation of transcription, DNA-templated	2.90E-02
93	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	3.14E-02
94	GO:0009658: chloroplast organization	3.32E-02
95	GO:0080167: response to karrikin	3.87E-02
96	GO:0046777: protein autophosphorylation	4.06E-02
97	GO:0044550: secondary metabolite biosynthetic process	4.11E-02
98	GO:0045892: negative regulation of transcription, DNA-templated	4.45E-02
99	GO:0032259: methylation	4.95E-02
100	GO:0016042: lipid catabolic process	5.00E-02

Rank	GO Term	Adjusted P value
1	GO:0008170: N-methyltransferase activity	0.00E+00
2	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
3	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
4	GO:0009008: DNA-methyltransferase activity	0.00E+00
5	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.10E-04
6	GO:0010331: gibberellin binding	1.10E-04
7	GO:0004848: ureidoglycolate hydrolase activity	1.89E-04
8	GO:0019003: GDP binding	1.89E-04
9	GO:0000900: translation repressor activity, nucleic acid binding	1.89E-04
10	GO:0000339: RNA cap binding	2.78E-04
11	GO:0009882: blue light photoreceptor activity	2.78E-04
12	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	6.94E-04
13	GO:0004144: diacylglycerol O-acyltransferase activity	6.94E-04
14	GO:0004525: ribonuclease III activity	9.32E-04
15	GO:0071949: FAD binding	1.19E-03
16	GO:0001055: RNA polymerase II activity	1.32E-03
17	GO:0001054: RNA polymerase I activity	1.61E-03
18	GO:0001056: RNA polymerase III activity	1.77E-03
19	GO:0005315: inorganic phosphate transmembrane transporter activity	1.92E-03
20	GO:0008514: organic anion transmembrane transporter activity	3.53E-03
21	GO:0008080: N-acetyltransferase activity	4.14E-03
22	GO:0004806: triglyceride lipase activity	6.89E-03
23	GO:0005096: GTPase activator activity	7.65E-03
24	GO:0004712: protein serine/threonine/tyrosine kinase activity	9.27E-03
25	GO:0051539: 4 iron, 4 sulfur cluster binding	9.55E-03
26	GO:0004364: glutathione transferase activity	1.01E-02
27	GO:0035091: phosphatidylinositol binding	1.10E-02
28	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	1.28E-02
29	GO:0008234: cysteine-type peptidase activity	1.38E-02
30	GO:0008026: ATP-dependent helicase activity	1.72E-02
31	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.97E-02
32	GO:0003723: RNA binding	2.04E-02
33	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.12E-02
34	GO:0015144: carbohydrate transmembrane transporter activity	2.20E-02
35	GO:0005351: sugar:proton symporter activity	2.39E-02
36	GO:0005515: protein binding	2.41E-02
37	GO:0005509: calcium ion binding	2.46E-02
38	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.73E-02
39	GO:0042802: identical protein binding	2.88E-02
40	GO:0003824: catalytic activity	2.92E-02
41	GO:0008168: methyltransferase activity	3.23E-02
42	GO:0004497: monooxygenase activity	3.87E-02
43	GO:0042803: protein homodimerization activity	4.55E-02
44	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	4.65E-02

Rank	GO Term	Adjusted P value
1	GO:0030427: site of polarized growth	0.00E+00
2	GO:0005845: mRNA cap binding complex	4.45E-05
3	GO:0005846: nuclear cap binding complex	1.10E-04
4	GO:0016605: PML body	1.89E-04
5	GO:0009517: PSII associated light-harvesting complex II	3.73E-04
6	GO:0030140: trans-Golgi network transport vesicle	5.82E-04
7	GO:0000123: histone acetyltransferase complex	8.11E-04
8	GO:0005811: lipid particle	1.06E-03
9	GO:0016604: nuclear body	1.32E-03
10	GO:0009508: plastid chromosome	1.92E-03
11	GO:0000419: DNA-directed RNA polymerase V complex	2.42E-03
12	GO:0015935: small ribosomal subunit	2.96E-03
13	GO:0031969: chloroplast membrane	5.00E-03
14	GO:0009295: nucleoid	5.68E-03
15	GO:0005819: spindle	9.27E-03
16	GO:0005654: nucleoplasm	1.90E-02
17	GO:0005623: cell	1.97E-02
18	GO:0005615: extracellular space	2.63E-02
19	GO:0009536: plastid	3.27E-02
20	GO:0009507: chloroplast	4.74E-02
21	GO:0005743: mitochondrial inner membrane	4.85E-02