gene detail

Gene description

TAIR ID: AT1G25450

Short description: 3-ketoacyl-CoA synthase 5

Pathogen responsiveness: -0.54

General responsiveness: 0.79

Orthologous

Rice: No orthologous gene

Maize: No orthologous gene

Wheat: No orthologous gene

GO biological process

very long-chain fatty acid metabolic process, response to cold, pollen tube development, fatty acid biosynthetic process, cuticle development, response to light stimulus

GO cellular component

endoplasmic reticulum, membrane, integral component of membrane

GO molecular function

3-oxo-lignoceronyl-CoA synthase activity, 3-oxo-cerotoyl-CoA synthase activity, 3-oxo-arachidoyl-CoA synthase activity, very-long-chain 3-ketoacyl-CoA synthase activity, fatty acid elongase activity

Protein domain

Pfam	PF08541, 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Pfam	PF08392, FAE1/Type III polyketide synthase-like protein

Metabolic pathway

PWY-5080: very long chain fatty acid biosynthesis I

KEGG pathway

PATH:ath00062: Fatty acid elongation

Transcriptional regulation

Regulator:
AT1G24260, AT5G61850, AT2G43010

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view

Differentially expressed condition

11 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17464	Laer, control	Laer, PstDC3000 12 h	-1.66	1.07E-03
GSE17464	Penta, control	Penta, Alternaria brassicicola 3 d	-1.65	9.21E-04
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.10	7.54E-09
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-2.33	1.16E-03
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.71	9.83E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-2.61	6.63E-11
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.63	6.90E-08
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.92	1.45E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-2.71	3.65E-11
GSE50526	Col, WT, mock 24 h	Col, WT, A. brassicicola 24 h	-2.10	2.32E-04
GSE9674	Ws-4, WT, control	Ws-4, WT, Xanthomonas strain Xcc147 90-105 min	1.55	2.19E-02