co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G25450

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0035437: maintenance of protein localization in endoplasmic reticulum	0.00E+00
2	GO:0010432: bract development	0.00E+00
3	GO:0009667: plastid inner membrane organization	0.00E+00
4	GO:1904526: regulation of microtubule binding	0.00E+00
5	GO:1905499: trichome papilla formation	0.00E+00
6	GO:0010451: floral meristem growth	0.00E+00
7	GO:0010025: wax biosynthetic process	2.54E-14
8	GO:0042335: cuticle development	6.39E-11
9	GO:0009409: response to cold	6.43E-08
10	GO:0009631: cold acclimation	1.45E-07
11	GO:0006633: fatty acid biosynthetic process	8.23E-07
12	GO:0010143: cutin biosynthetic process	9.77E-07
13	GO:0009873: ethylene-activated signaling pathway	9.01E-06
14	GO:0000038: very long-chain fatty acid metabolic process	2.23E-05
15	GO:0009737: response to abscisic acid	2.95E-05
16	GO:0009414: response to water deprivation	4.28E-05
17	GO:0006665: sphingolipid metabolic process	6.67E-05
18	GO:0035435: phosphate ion transmembrane transport	9.77E-05
19	GO:0050832: defense response to fungus	1.07E-04
20	GO:0006631: fatty acid metabolic process	1.19E-04
21	GO:0070417: cellular response to cold	1.60E-04
22	GO:0050829: defense response to Gram-negative bacterium	1.77E-04
23	GO:0008610: lipid biosynthetic process	2.25E-04
24	GO:0009415: response to water	2.25E-04
25	GO:0009809: lignin biosynthetic process	2.30E-04
26	GO:0009609: response to symbiotic bacterium	2.46E-04
27	GO:0006723: cuticle hydrocarbon biosynthetic process	2.46E-04
28	GO:0042759: long-chain fatty acid biosynthetic process	2.46E-04
29	GO:0080051: cutin transport	2.46E-04
30	GO:0033481: galacturonate biosynthetic process	2.46E-04
31	GO:0042761: very long-chain fatty acid biosynthetic process	3.99E-04
32	GO:0006970: response to osmotic stress	4.07E-04
33	GO:0030148: sphingolipid biosynthetic process	5.39E-04
34	GO:0015908: fatty acid transport	5.44E-04
35	GO:0010115: regulation of abscisic acid biosynthetic process	5.44E-04
36	GO:1901679: nucleotide transmembrane transport	5.44E-04
37	GO:0015709: thiosulfate transport	5.44E-04
38	GO:0071422: succinate transmembrane transport	5.44E-04
39	GO:0031407: oxylipin metabolic process	5.44E-04
40	GO:0010289: homogalacturonan biosynthetic process	5.44E-04
41	GO:0050826: response to freezing	7.00E-04
42	GO:0009416: response to light stimulus	7.24E-04
43	GO:0070588: calcium ion transmembrane transport	8.79E-04
44	GO:0046168: glycerol-3-phosphate catabolic process	8.83E-04
45	GO:0043447: alkane biosynthetic process	8.83E-04
46	GO:0080121: AMP transport	8.83E-04
47	GO:0009062: fatty acid catabolic process	8.83E-04
48	GO:0006081: cellular aldehyde metabolic process	8.83E-04
49	GO:0010150: leaf senescence	9.41E-04
50	GO:0006072: glycerol-3-phosphate metabolic process	1.26E-03
51	GO:1901332: negative regulation of lateral root development	1.26E-03
52	GO:0010031: circumnutation	1.26E-03
53	GO:0009413: response to flooding	1.26E-03
54	GO:0051259: protein oligomerization	1.26E-03
55	GO:0006624: vacuolar protein processing	1.26E-03
56	GO:0010371: regulation of gibberellin biosynthetic process	1.26E-03
57	GO:0015729: oxaloacetate transport	1.26E-03
58	GO:0042538: hyperosmotic salinity response	1.49E-03
59	GO:0009651: response to salt stress	1.53E-03
60	GO:0001944: vasculature development	1.55E-03
61	GO:0022622: root system development	1.68E-03
62	GO:0006552: leucine catabolic process	1.68E-03
63	GO:0071585: detoxification of cadmium ion	1.68E-03
64	GO:0015867: ATP transport	1.68E-03
65	GO:0010222: stem vascular tissue pattern formation	1.68E-03
66	GO:0046345: abscisic acid catabolic process	1.68E-03
67	GO:0042631: cellular response to water deprivation	1.97E-03
68	GO:0009697: salicylic acid biosynthetic process	2.15E-03
69	GO:0071423: malate transmembrane transport	2.15E-03
70	GO:0048497: maintenance of floral organ identity	2.15E-03
71	GO:0000302: response to reactive oxygen species	2.61E-03
72	GO:0045962: positive regulation of development, heterochronic	2.65E-03
73	GO:0009913: epidermal cell differentiation	2.65E-03
74	GO:1900425: negative regulation of defense response to bacterium	2.65E-03
75	GO:0006574: valine catabolic process	2.65E-03
76	GO:0015866: ADP transport	2.65E-03
77	GO:0010200: response to chitin	2.66E-03
78	GO:0009611: response to wounding	2.96E-03
79	GO:0042372: phylloquinone biosynthetic process	3.18E-03
80	GO:0045926: negative regulation of growth	3.18E-03
81	GO:0009082: branched-chain amino acid biosynthetic process	3.18E-03
82	GO:0098655: cation transmembrane transport	3.18E-03
83	GO:0010555: response to mannitol	3.18E-03
84	GO:0006904: vesicle docking involved in exocytosis	3.35E-03
85	GO:0010286: heat acclimation	3.35E-03
86	GO:0008272: sulfate transport	3.75E-03
87	GO:1902074: response to salt	3.75E-03
88	GO:0032880: regulation of protein localization	3.75E-03
89	GO:0009610: response to symbiotic fungus	3.75E-03
90	GO:0030497: fatty acid elongation	3.75E-03
91	GO:0009911: positive regulation of flower development	3.76E-03
92	GO:0009819: drought recovery	4.35E-03
93	GO:2000070: regulation of response to water deprivation	4.35E-03
94	GO:0050821: protein stabilization	4.35E-03
95	GO:0007155: cell adhesion	4.35E-03
96	GO:0007623: circadian rhythm	5.12E-03
97	GO:0048767: root hair elongation	5.15E-03
98	GO:0006098: pentose-phosphate shunt	5.65E-03
99	GO:0010345: suberin biosynthetic process	5.65E-03
100	GO:0098656: anion transmembrane transport	5.65E-03
101	GO:0009637: response to blue light	6.21E-03
102	GO:2000280: regulation of root development	6.33E-03
103	GO:0055114: oxidation-reduction process	7.05E-03
104	GO:0006949: syncytium formation	7.06E-03
105	GO:0006839: mitochondrial transport	7.08E-03
106	GO:0010015: root morphogenesis	7.80E-03
107	GO:0009744: response to sucrose	8.02E-03
108	GO:0051707: response to other organism	8.02E-03
109	GO:0016024: CDP-diacylglycerol biosynthetic process	8.58E-03
110	GO:0045037: protein import into chloroplast stroma	8.58E-03
111	GO:0010582: floral meristem determinacy	8.58E-03
112	GO:0010105: negative regulation of ethylene-activated signaling pathway	8.58E-03
113	GO:0009644: response to high light intensity	8.67E-03
114	GO:0010588: cotyledon vascular tissue pattern formation	9.38E-03
115	GO:2000012: regulation of auxin polar transport	9.38E-03
116	GO:0010102: lateral root morphogenesis	9.38E-03
117	GO:0018107: peptidyl-threonine phosphorylation	9.38E-03
118	GO:0009725: response to hormone	9.38E-03
119	GO:0071555: cell wall organization	9.79E-03
120	GO:0048440: carpel development	1.02E-02
121	GO:0010540: basipetal auxin transport	1.02E-02
122	GO:0009225: nucleotide-sugar metabolic process	1.11E-02
123	GO:0080167: response to karrikin	1.17E-02
124	GO:0030150: protein import into mitochondrial matrix	1.29E-02
125	GO:0048367: shoot system development	1.32E-02
126	GO:0031408: oxylipin biosynthetic process	1.47E-02
127	GO:0016998: cell wall macromolecule catabolic process	1.47E-02
128	GO:0051260: protein homooligomerization	1.47E-02
129	GO:0009269: response to desiccation	1.47E-02
130	GO:0042545: cell wall modification	1.50E-02
131	GO:0009624: response to nematode	1.54E-02
132	GO:0010017: red or far-red light signaling pathway	1.57E-02
133	GO:0006869: lipid transport	1.66E-02
134	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.67E-02
135	GO:0010091: trichome branching	1.77E-02
136	GO:0016042: lipid catabolic process	1.86E-02
137	GO:0008284: positive regulation of cell proliferation	1.88E-02
138	GO:0006629: lipid metabolic process	1.92E-02
139	GO:0048653: anther development	1.99E-02
140	GO:0005975: carbohydrate metabolic process	2.01E-02
141	GO:0009958: positive gravitropism	2.09E-02
142	GO:0010268: brassinosteroid homeostasis	2.09E-02
143	GO:0010183: pollen tube guidance	2.32E-02
144	GO:0009749: response to glucose	2.32E-02
145	GO:0008654: phospholipid biosynthetic process	2.32E-02
146	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.43E-02
147	GO:0006635: fatty acid beta-oxidation	2.43E-02
148	GO:0016132: brassinosteroid biosynthetic process	2.43E-02
149	GO:0048235: pollen sperm cell differentiation	2.55E-02
150	GO:0010090: trichome morphogenesis	2.67E-02
151	GO:0045490: pectin catabolic process	2.67E-02
152	GO:0019760: glucosinolate metabolic process	2.79E-02
153	GO:0010252: auxin homeostasis	2.79E-02
154	GO:0009639: response to red or far red light	2.79E-02
155	GO:0009828: plant-type cell wall loosening	2.79E-02
156	GO:0016125: sterol metabolic process	2.79E-02
157	GO:0006351: transcription, DNA-templated	2.85E-02
158	GO:0009739: response to gibberellin	2.99E-02
159	GO:0006470: protein dephosphorylation	3.06E-02
160	GO:0010468: regulation of gene expression	3.19E-02
161	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	3.29E-02
162	GO:0009908: flower development	3.47E-02
163	GO:0030154: cell differentiation	3.54E-02
164	GO:0010411: xyloglucan metabolic process	3.55E-02
165	GO:0016049: cell growth	3.69E-02
166	GO:0048481: plant ovule development	3.82E-02
167	GO:0018298: protein-chromophore linkage	3.82E-02
168	GO:0010311: lateral root formation	3.96E-02
169	GO:0009826: unidimensional cell growth	3.98E-02
170	GO:0006811: ion transport	4.10E-02
171	GO:0048527: lateral root development	4.24E-02
172	GO:0045087: innate immune response	4.52E-02

Rank	GO Term	Adjusted P value
1	GO:0005534: galactose binding	0.00E+00
2	GO:0052631: sphingolipid delta-8 desaturase activity	0.00E+00
3	GO:0019166: trans-2-enoyl-CoA reductase (NADPH) activity	0.00E+00
4	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	3.28E-10
5	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	3.28E-10
6	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	3.28E-10
7	GO:0009922: fatty acid elongase activity	2.08E-09
8	GO:0070330: aromatase activity	1.77E-08
9	GO:0018685: alkane 1-monooxygenase activity	5.73E-07
10	GO:0052747: sinapyl alcohol dehydrogenase activity	4.81E-06
11	GO:0045551: cinnamyl-alcohol dehydrogenase activity	2.81E-05
12	GO:0016746: transferase activity, transferring acyl groups	4.99E-05
13	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	9.77E-05
14	GO:0031957: very long-chain fatty acid-CoA ligase activity	2.46E-04
15	GO:0008909: isochorismate synthase activity	2.46E-04
16	GO:0015245: fatty acid transporter activity	2.46E-04
17	GO:0008809: carnitine racemase activity	2.46E-04
18	GO:0015117: thiosulfate transmembrane transporter activity	5.44E-04
19	GO:1901677: phosphate transmembrane transporter activity	5.44E-04
20	GO:0016629: 12-oxophytodienoate reductase activity	5.44E-04
21	GO:0001047: core promoter binding	5.44E-04
22	GO:0017040: ceramidase activity	5.44E-04
23	GO:0008083: growth factor activity	7.88E-04
24	GO:0050284: sinapate 1-glucosyltransferase activity	8.83E-04
25	GO:0015141: succinate transmembrane transporter activity	8.83E-04
26	GO:0010295: (+)-abscisic acid 8'-hydroxylase activity	8.83E-04
27	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	8.83E-04
28	GO:0004030: aldehyde dehydrogenase [NAD(P)+] activity	8.83E-04
29	GO:0005310: dicarboxylic acid transmembrane transporter activity	8.83E-04
30	GO:0015131: oxaloacetate transmembrane transporter activity	1.26E-03
31	GO:0003883: CTP synthase activity	1.26E-03
32	GO:0102361: esculetin 4-O-beta-glucosyltransferase activity	1.26E-03
33	GO:0052656: L-isoleucine transaminase activity	1.26E-03
34	GO:0003865: 3-oxo-5-alpha-steroid 4-dehydrogenase activity	1.26E-03
35	GO:0004165: dodecenoyl-CoA delta-isomerase activity	1.26E-03
36	GO:0052654: L-leucine transaminase activity	1.26E-03
37	GO:0047218: hydroxycinnamate 4-beta-glucosyltransferase activity	1.26E-03
38	GO:0102359: daphnetin 4-O-beta-glucosyltransferase activity	1.26E-03
39	GO:0052655: L-valine transaminase activity	1.26E-03
40	GO:0004084: branched-chain-amino-acid transaminase activity	1.68E-03
41	GO:0050378: UDP-glucuronate 4-epimerase activity	1.68E-03
42	GO:0043565: sequence-specific DNA binding	1.72E-03
43	GO:0008289: lipid binding	1.86E-03
44	GO:0080122: AMP transmembrane transporter activity	2.15E-03
45	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	2.15E-03
46	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.65E-03
47	GO:0004029: aldehyde dehydrogenase (NAD) activity	2.65E-03
48	GO:0016791: phosphatase activity	3.16E-03
49	GO:0102391: decanoate--CoA ligase activity	3.18E-03
50	GO:0005347: ATP transmembrane transporter activity	3.18E-03
51	GO:0015217: ADP transmembrane transporter activity	3.18E-03
52	GO:0009881: photoreceptor activity	3.75E-03
53	GO:0015140: malate transmembrane transporter activity	3.75E-03
54	GO:0004467: long-chain fatty acid-CoA ligase activity	3.75E-03
55	GO:0016621: cinnamoyl-CoA reductase activity	3.75E-03
56	GO:0015288: porin activity	4.35E-03
57	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.66E-03
58	GO:0016627: oxidoreductase activity, acting on the CH-CH group of donors	5.65E-03
59	GO:0009672: auxin:proton symporter activity	6.33E-03
60	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	6.33E-03
61	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	6.94E-03
62	GO:0004864: protein phosphatase inhibitor activity	7.06E-03
63	GO:0003680: AT DNA binding	7.80E-03
64	GO:0015116: sulfate transmembrane transporter activity	8.58E-03
65	GO:0016788: hydrolase activity, acting on ester bonds	9.14E-03
66	GO:0005388: calcium-transporting ATPase activity	9.38E-03
67	GO:0010329: auxin efflux transmembrane transporter activity	9.38E-03
68	GO:0015266: protein channel activity	9.38E-03
69	GO:0005262: calcium channel activity	9.38E-03
70	GO:0015114: phosphate ion transmembrane transporter activity	9.38E-03
71	GO:0005506: iron ion binding	9.52E-03
72	GO:0044212: transcription regulatory region DNA binding	9.79E-03
73	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.02E-02
74	GO:0008146: sulfotransferase activity	1.11E-02
75	GO:0003824: catalytic activity	1.15E-02
76	GO:0045330: aspartyl esterase activity	1.20E-02
77	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.32E-02
78	GO:0052689: carboxylic ester hydrolase activity	1.33E-02
79	GO:0080043: quercetin 3-O-glucosyltransferase activity	1.41E-02
80	GO:0080044: quercetin 7-O-glucosyltransferase activity	1.41E-02
81	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.44E-02
82	GO:0030599: pectinesterase activity	1.45E-02
83	GO:0035251: UDP-glucosyltransferase activity	1.47E-02
84	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.66E-02
85	GO:0019825: oxygen binding	1.86E-02
86	GO:0010181: FMN binding	2.21E-02
87	GO:0004872: receptor activity	2.32E-02
88	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.43E-02
89	GO:0004197: cysteine-type endopeptidase activity	2.55E-02
90	GO:0016798: hydrolase activity, acting on glycosyl bonds	3.55E-02
91	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.82E-02
92	GO:0005096: GTPase activator activity	3.96E-02
93	GO:0003677: DNA binding	4.31E-02
94	GO:0003993: acid phosphatase activity	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0034426: etioplast membrane	0.00E+00
2	GO:0005783: endoplasmic reticulum	1.84E-05
3	GO:0046658: anchored component of plasma membrane	3.42E-05
4	GO:0031225: anchored component of membrane	1.07E-04
5	GO:0005789: endoplasmic reticulum membrane	1.83E-04
6	GO:0009923: fatty acid elongase complex	2.46E-04
7	GO:0009505: plant-type cell wall	4.04E-04
8	GO:0031357: integral component of chloroplast inner membrane	5.44E-04
9	GO:0005618: cell wall	8.52E-04
10	GO:0009897: external side of plasma membrane	8.83E-04
11	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.26E-03
12	GO:0009527: plastid outer membrane	1.68E-03
13	GO:0000145: exocyst	2.78E-03
14	GO:0016020: membrane	3.70E-03
15	GO:0031305: integral component of mitochondrial inner membrane	4.35E-03
16	GO:0046930: pore complex	4.98E-03
17	GO:0016021: integral component of membrane	8.01E-03
18	GO:0005576: extracellular region	1.48E-02
19	GO:0005743: mitochondrial inner membrane	1.76E-02
20	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.77E-02
21	GO:0043231: intracellular membrane-bounded organelle	2.18E-02
22	GO:0071944: cell periphery	2.67E-02
23	GO:0032580: Golgi cisterna membrane	2.79E-02
24	GO:0005778: peroxisomal membrane	2.91E-02
25	GO:0005788: endoplasmic reticulum lumen	3.29E-02
26	GO:0009707: chloroplast outer membrane	3.82E-02
27	GO:0005874: microtubule	4.93E-02