gene detail

Gene description

TAIR ID: AT1G23400

Short description: RNA-binding CRS1 / YhbY (CRM) domain-containing protein

Pathogen responsiveness: 0.01

General responsiveness: 1.27

Orthologous

Rice: No orthologous gene

Maize:

AC199526.5_FGT003

Wheat: No orthologous gene

GO biological process

mRNA processing, Group II intron splicing

GO cellular component

intracellular ribonucleoprotein complex, chloroplast stroma, chloroplast

GO molecular function

RNA binding

Protein domain

Pfam	PF01985, CRS1 / YhbY (CRM) domain
SMART	SM01103, CRS1_YhbY

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT5G61850, AT4G36990

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

21 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, ataf1, control	Col, ataf1, Bg h	-1.83	1.48E-08
GSE17464	Laer, JA+Flg22 0 h	Laer, JA+Flg22 1 h	-1.75	7.67E-03
GSE17464	Laer, JA+Flg22 0 h	Laer, JA+Flg22 2 h	-1.95	2.32E-03
GSE17464	Laer, control	Laer, Flg22 1 h	-1.70	3.81E-03
GSE17464	Laer, control	Laer, Flg22 2 h	-2.22	1.83E-04
GSE17464	Penta, control	Penta, Flg22 2 h	-2.76	4.49E-06
GSE17464	Penta, control	Penta, Flg22 2 h	-2.79	6.55E-06
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-1.60	7.91E-06
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-1.55	1.82E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.01	4.56E-08
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	-1.96	7.17E-09
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-1.95	1.38E-03
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-2.55	2.05E-12
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-2.33	1.06E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.09	4.01E-11
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.85	2.63E-10
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-2.78	5.69E-13
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-2.39	1.99E-13
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-1.98	9.28E-06
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.99	3.57E-07
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-1.78	1.81E-03