Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G23400

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
2GO:0090470: shoot organ boundary specification0.00E+00
3GO:0061635: regulation of protein complex stability0.00E+00
4GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
5GO:0006066: alcohol metabolic process0.00E+00
6GO:0042821: pyridoxal biosynthetic process0.00E+00
7GO:0035970: peptidyl-threonine dephosphorylation0.00E+00
8GO:0090042: tubulin deacetylation0.00E+00
9GO:0042820: vitamin B6 catabolic process0.00E+00
10GO:2001294: malonyl-CoA catabolic process0.00E+00
11GO:0006399: tRNA metabolic process0.00E+00
12GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
13GO:0015979: photosynthesis1.20E-11
14GO:0009773: photosynthetic electron transport in photosystem I3.41E-09
15GO:0010027: thylakoid membrane organization3.02E-08
16GO:0009658: chloroplast organization3.95E-06
17GO:0015994: chlorophyll metabolic process3.85E-05
18GO:0018298: protein-chromophore linkage4.87E-05
19GO:0031365: N-terminal protein amino acid modification6.16E-05
20GO:0010196: nonphotochemical quenching1.64E-04
21GO:0006400: tRNA modification1.64E-04
22GO:0048564: photosystem I assembly2.09E-04
23GO:0015969: guanosine tetraphosphate metabolic process2.34E-04
24GO:0009443: pyridoxal 5'-phosphate salvage2.34E-04
25GO:1902025: nitrate import2.34E-04
26GO:1904966: positive regulation of vitamin E biosynthetic process2.34E-04
27GO:0000481: maturation of 5S rRNA2.34E-04
28GO:1904964: positive regulation of phytol biosynthetic process2.34E-04
29GO:0080051: cutin transport2.34E-04
30GO:0033481: galacturonate biosynthetic process2.34E-04
31GO:0043686: co-translational protein modification2.34E-04
32GO:0090548: response to nitrate starvation2.34E-04
33GO:0034337: RNA folding2.34E-04
34GO:0071588: hydrogen peroxide mediated signaling pathway2.34E-04
35GO:0071482: cellular response to light stimulus2.59E-04
36GO:0032544: plastid translation2.59E-04
37GO:0009915: phloem sucrose loading5.20E-04
38GO:1902326: positive regulation of chlorophyll biosynthetic process5.20E-04
39GO:0015908: fatty acid transport5.20E-04
40GO:0010115: regulation of abscisic acid biosynthetic process5.20E-04
41GO:0016122: xanthophyll metabolic process5.20E-04
42GO:0030388: fructose 1,6-bisphosphate metabolic process5.20E-04
43GO:0010270: photosystem II oxygen evolving complex assembly5.20E-04
44GO:0009735: response to cytokinin5.24E-04
45GO:0006094: gluconeogenesis6.54E-04
46GO:0005986: sucrose biosynthetic process6.54E-04
47GO:0006000: fructose metabolic process8.44E-04
48GO:0010581: regulation of starch biosynthetic process8.44E-04
49GO:0006753: nucleoside phosphate metabolic process8.44E-04
50GO:0007017: microtubule-based process1.11E-03
51GO:0009768: photosynthesis, light harvesting in photosystem I1.11E-03
52GO:0009644: response to high light intensity1.13E-03
53GO:2001141: regulation of RNA biosynthetic process1.20E-03
54GO:0010371: regulation of gibberellin biosynthetic process1.20E-03
55GO:0006020: inositol metabolic process1.20E-03
56GO:0009152: purine ribonucleotide biosynthetic process1.20E-03
57GO:0046653: tetrahydrofolate metabolic process1.20E-03
58GO:0045727: positive regulation of translation1.61E-03
59GO:0006021: inositol biosynthetic process1.61E-03
60GO:0010021: amylopectin biosynthetic process1.61E-03
61GO:0010222: stem vascular tissue pattern formation1.61E-03
62GO:0042335: cuticle development1.83E-03
63GO:0080110: sporopollenin biosynthetic process2.05E-03
64GO:0006564: L-serine biosynthetic process2.05E-03
65GO:0006461: protein complex assembly2.05E-03
66GO:0016554: cytidine to uridine editing2.52E-03
67GO:0009913: epidermal cell differentiation2.52E-03
68GO:0006828: manganese ion transport2.52E-03
69GO:0010190: cytochrome b6f complex assembly2.52E-03
70GO:0006596: polyamine biosynthetic process2.52E-03
71GO:0046855: inositol phosphate dephosphorylation2.52E-03
72GO:0006561: proline biosynthetic process2.52E-03
73GO:0048759: xylem vessel member cell differentiation2.52E-03
74GO:0010304: PSII associated light-harvesting complex II catabolic process2.52E-03
75GO:0042549: photosystem II stabilization2.52E-03
76GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway2.52E-03
77GO:0010189: vitamin E biosynthetic process3.03E-03
78GO:0010019: chloroplast-nucleus signaling pathway3.03E-03
79GO:0015937: coenzyme A biosynthetic process3.58E-03
80GO:0050829: defense response to Gram-negative bacterium3.58E-03
81GO:0009645: response to low light intensity stimulus3.58E-03
82GO:0042744: hydrogen peroxide catabolic process3.66E-03
83GO:0015995: chlorophyll biosynthetic process4.13E-03
84GO:0008610: lipid biosynthetic process4.15E-03
85GO:0006605: protein targeting4.15E-03
86GO:0009704: de-etiolation4.15E-03
87GO:0032508: DNA duplex unwinding4.15E-03
88GO:0019430: removal of superoxide radicals4.74E-03
89GO:0009657: plastid organization4.74E-03
90GO:0017004: cytochrome complex assembly4.74E-03
91GO:0006002: fructose 6-phosphate metabolic process4.74E-03
92GO:0009051: pentose-phosphate shunt, oxidative branch5.37E-03
93GO:0006098: pentose-phosphate shunt5.37E-03
94GO:0090305: nucleic acid phosphodiester bond hydrolysis5.37E-03
95GO:0010206: photosystem II repair5.37E-03
96GO:0000902: cell morphogenesis5.37E-03
97GO:0009637: response to blue light5.79E-03
98GO:0010205: photoinhibition6.03E-03
99GO:0006779: porphyrin-containing compound biosynthetic process6.03E-03
100GO:1900865: chloroplast RNA modification6.03E-03
101GO:0010380: regulation of chlorophyll biosynthetic process6.03E-03
102GO:0006782: protoporphyrinogen IX biosynthetic process6.71E-03
103GO:0009688: abscisic acid biosynthetic process6.71E-03
104GO:0006816: calcium ion transport7.43E-03
105GO:0008285: negative regulation of cell proliferation7.43E-03
106GO:0009073: aromatic amino acid family biosynthetic process7.43E-03
107GO:0043085: positive regulation of catalytic activity7.43E-03
108GO:0006415: translational termination7.43E-03
109GO:0006352: DNA-templated transcription, initiation7.43E-03
110GO:0009750: response to fructose7.43E-03
111GO:0000038: very long-chain fatty acid metabolic process7.43E-03
112GO:0010114: response to red light7.46E-03
113GO:0005983: starch catabolic process8.17E-03
114GO:0006790: sulfur compound metabolic process8.17E-03
115GO:0010588: cotyledon vascular tissue pattern formation8.93E-03
116GO:0010628: positive regulation of gene expression8.93E-03
117GO:0006006: glucose metabolic process8.93E-03
118GO:0010207: photosystem II assembly9.72E-03
119GO:0019253: reductive pentose-phosphate cycle9.72E-03
120GO:0009266: response to temperature stimulus9.72E-03
121GO:0006364: rRNA processing1.01E-02
122GO:0005985: sucrose metabolic process1.05E-02
123GO:0046854: phosphatidylinositol phosphorylation1.05E-02
124GO:0009225: nucleotide-sugar metabolic process1.05E-02
125GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.12E-02
126GO:0019762: glucosinolate catabolic process1.14E-02
127GO:0008299: isoprenoid biosynthetic process1.31E-02
128GO:0016575: histone deacetylation1.31E-02
129GO:0010073: meristem maintenance1.31E-02
130GO:0061077: chaperone-mediated protein folding1.40E-02
131GO:0055085: transmembrane transport1.40E-02
132GO:0009409: response to cold1.46E-02
133GO:0016226: iron-sulfur cluster assembly1.50E-02
134GO:0010227: floral organ abscission1.59E-02
135GO:0032259: methylation1.67E-02
136GO:0006810: transport1.68E-02
137GO:0010584: pollen exine formation1.69E-02
138GO:0009561: megagametogenesis1.69E-02
139GO:0009306: protein secretion1.69E-02
140GO:0010087: phloem or xylem histogenesis1.89E-02
141GO:0008152: metabolic process1.99E-02
142GO:0010182: sugar mediated signaling pathway1.99E-02
143GO:0048544: recognition of pollen2.10E-02
144GO:0055114: oxidation-reduction process2.18E-02
145GO:0019252: starch biosynthetic process2.20E-02
146GO:0000302: response to reactive oxygen species2.31E-02
147GO:0019761: glucosinolate biosynthetic process2.42E-02
148GO:0030163: protein catabolic process2.54E-02
149GO:0019760: glucosinolate metabolic process2.65E-02
150GO:0001666: response to hypoxia3.01E-02
151GO:0042128: nitrate assimilation3.25E-02
152GO:0010218: response to far red light3.89E-02
153GO:0009631: cold acclimation4.03E-02
154GO:0009853: photorespiration4.30E-02
155GO:0034599: cellular response to oxidative stress4.43E-02
156GO:0080167: response to karrikin4.76E-02
157GO:0006631: fatty acid metabolic process4.85E-02
RankGO TermAdjusted P value
1GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
2GO:0046577: long-chain-alcohol oxidase activity0.00E+00
3GO:0010301: xanthoxin dehydrogenase activity0.00E+00
4GO:0051721: protein phosphatase 2A binding0.00E+00
5GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
6GO:0009976: tocopherol cyclase activity0.00E+00
7GO:0042903: tubulin deacetylase activity0.00E+00
8GO:0010487: thermospermine synthase activity0.00E+00
9GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
10GO:0043014: alpha-tubulin binding0.00E+00
11GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
12GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
13GO:0102193: protein-ribulosamine 3-kinase activity0.00E+00
14GO:0051738: xanthophyll binding0.00E+00
15GO:0016168: chlorophyll binding1.30E-06
16GO:0005528: FK506 binding1.81E-06
17GO:0070402: NADPH binding9.29E-06
18GO:0046872: metal ion binding1.02E-04
19GO:0022891: substrate-specific transmembrane transporter activity1.13E-04
20GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.59E-04
21GO:0004033: aldo-keto reductase (NADP) activity2.09E-04
22GO:0050308: sugar-phosphatase activity2.34E-04
23GO:0010945: CoA pyrophosphatase activity2.34E-04
24GO:0042586: peptide deformylase activity2.34E-04
25GO:0019203: carbohydrate phosphatase activity2.34E-04
26GO:0016768: spermine synthase activity2.34E-04
27GO:0015245: fatty acid transporter activity2.34E-04
28GO:0030794: (S)-coclaurine-N-methyltransferase activity2.34E-04
29GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.20E-04
30GO:0008934: inositol monophosphate 1-phosphatase activity5.20E-04
31GO:0052833: inositol monophosphate 4-phosphatase activity5.20E-04
32GO:0016630: protochlorophyllide reductase activity5.20E-04
33GO:0008967: phosphoglycolate phosphatase activity5.20E-04
34GO:0008728: GTP diphosphokinase activity5.20E-04
35GO:0047746: chlorophyllase activity5.20E-04
36GO:0004617: phosphoglycerate dehydrogenase activity5.20E-04
37GO:0052832: inositol monophosphate 3-phosphatase activity5.20E-04
38GO:0033201: alpha-1,4-glucan synthase activity5.20E-04
39GO:0004373: glycogen (starch) synthase activity8.44E-04
40GO:0050307: sucrose-phosphate phosphatase activity8.44E-04
41GO:0016742: hydroxymethyl-, formyl- and related transferase activity8.44E-04
42GO:0008864: formyltetrahydrofolate deformylase activity8.44E-04
43GO:0031409: pigment binding9.13E-04
44GO:0008893: guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity1.20E-03
45GO:0048487: beta-tubulin binding1.20E-03
46GO:0016149: translation release factor activity, codon specific1.20E-03
47GO:0001872: (1->3)-beta-D-glucan binding1.20E-03
48GO:0004045: aminoacyl-tRNA hydrolase activity1.61E-03
49GO:0016987: sigma factor activity1.61E-03
50GO:0009011: starch synthase activity1.61E-03
51GO:0043495: protein anchor1.61E-03
52GO:0050378: UDP-glucuronate 4-epimerase activity1.61E-03
53GO:0042277: peptide binding1.61E-03
54GO:0004659: prenyltransferase activity1.61E-03
55GO:0001053: plastid sigma factor activity1.61E-03
56GO:0004345: glucose-6-phosphate dehydrogenase activity1.61E-03
57GO:0003959: NADPH dehydrogenase activity2.05E-03
58GO:0016773: phosphotransferase activity, alcohol group as acceptor2.05E-03
59GO:0050662: coenzyme binding2.12E-03
60GO:0016853: isomerase activity2.12E-03
61GO:0004130: cytochrome-c peroxidase activity2.52E-03
62GO:0000210: NAD+ diphosphatase activity2.52E-03
63GO:0016688: L-ascorbate peroxidase activity2.52E-03
64GO:2001070: starch binding2.52E-03
65GO:0004332: fructose-bisphosphate aldolase activity2.52E-03
66GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.03E-03
67GO:0004723: calcium-dependent protein serine/threonine phosphatase activity3.03E-03
68GO:0008235: metalloexopeptidase activity3.58E-03
69GO:0019899: enzyme binding3.58E-03
70GO:0016787: hydrolase activity3.80E-03
71GO:0043022: ribosome binding4.15E-03
72GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)4.74E-03
73GO:0008138: protein tyrosine/serine/threonine phosphatase activity5.37E-03
74GO:0003747: translation release factor activity5.37E-03
75GO:0005384: manganese ion transmembrane transporter activity6.03E-03
76GO:0030234: enzyme regulator activity6.71E-03
77GO:0008047: enzyme activator activity6.71E-03
78GO:0015386: potassium:proton antiporter activity7.43E-03
79GO:0004177: aminopeptidase activity7.43E-03
80GO:0005509: calcium ion binding7.51E-03
81GO:0008168: methyltransferase activity7.77E-03
82GO:0004565: beta-galactosidase activity8.93E-03
83GO:0004022: alcohol dehydrogenase (NAD) activity8.93E-03
84GO:0015095: magnesium ion transmembrane transporter activity8.93E-03
85GO:0031072: heat shock protein binding8.93E-03
86GO:0008266: poly(U) RNA binding9.72E-03
87GO:0003824: catalytic activity1.02E-02
88GO:0102336: 3-oxo-arachidoyl-CoA synthase activity1.14E-02
89GO:0102337: 3-oxo-cerotoyl-CoA synthase activity1.14E-02
90GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity1.14E-02
91GO:0051536: iron-sulfur cluster binding1.22E-02
92GO:0004407: histone deacetylase activity1.22E-02
93GO:0015079: potassium ion transmembrane transporter activity1.31E-02
94GO:0004176: ATP-dependent peptidase activity1.40E-02
95GO:0004791: thioredoxin-disulfide reductase activity2.10E-02
96GO:0004518: nuclease activity2.42E-02
97GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.54E-02
98GO:0008237: metallopeptidase activity2.77E-02
99GO:0005200: structural constituent of cytoskeleton2.77E-02
100GO:0016597: amino acid binding2.89E-02
101GO:0051213: dioxygenase activity3.01E-02
102GO:0042626: ATPase activity, coupled to transmembrane movement of substances3.16E-02
103GO:0009931: calcium-dependent protein serine/threonine kinase activity3.25E-02
104GO:0004721: phosphoprotein phosphatase activity3.38E-02
105GO:0030247: polysaccharide binding3.38E-02
106GO:0004683: calmodulin-dependent protein kinase activity3.38E-02
107GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.63E-02
108GO:0015238: drug transmembrane transporter activity3.76E-02
109GO:0004222: metalloendopeptidase activity3.89E-02
110GO:0016788: hydrolase activity, acting on ester bonds3.92E-02
111GO:0030145: manganese ion binding4.03E-02
112GO:0016491: oxidoreductase activity4.19E-02
113GO:0003746: translation elongation factor activity4.30E-02
114GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.30E-02
115GO:0051539: 4 iron, 4 sulfur cluster binding4.71E-02
116GO:0050661: NADP binding4.71E-02
RankGO TermAdjusted P value
1GO:0009575: chromoplast stroma0.00E+00
2GO:0009507: chloroplast4.13E-52
3GO:0009535: chloroplast thylakoid membrane1.94E-29
4GO:0009534: chloroplast thylakoid2.33E-16
5GO:0009570: chloroplast stroma4.42E-15
6GO:0009579: thylakoid1.31E-12
7GO:0009543: chloroplast thylakoid lumen1.73E-11
8GO:0009941: chloroplast envelope6.30E-10
9GO:0031977: thylakoid lumen2.73E-07
10GO:0009523: photosystem II3.34E-07
11GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)8.65E-06
12GO:0030095: chloroplast photosystem II3.80E-05
13GO:0010287: plastoglobule5.85E-05
14GO:0031969: chloroplast membrane7.38E-05
15GO:0009654: photosystem II oxygen evolving complex7.50E-05
16GO:0019898: extrinsic component of membrane2.20E-04
17GO:0009782: photosystem I antenna complex2.34E-04
18GO:0030076: light-harvesting complex8.23E-04
19GO:0009897: external side of plasma membrane8.44E-04
20GO:0042651: thylakoid membrane1.11E-03
21GO:0015630: microtubule cytoskeleton1.20E-03
22GO:0009517: PSII associated light-harvesting complex II1.61E-03
23GO:0030286: dynein complex1.61E-03
24GO:0009840: chloroplastic endopeptidase Clp complex3.03E-03
25GO:0009533: chloroplast stromal thylakoid3.58E-03
26GO:0009501: amyloplast4.15E-03
27GO:0032040: small-subunit processome8.17E-03
28GO:0005875: microtubule associated complex1.14E-02
29GO:0009706: chloroplast inner membrane1.44E-02
30GO:0016021: integral component of membrane1.94E-02
31GO:0009522: photosystem I2.10E-02
32GO:0032580: Golgi cisterna membrane2.65E-02
33GO:0005778: peroxisomal membrane2.77E-02
34GO:0010319: stromule2.77E-02
35GO:0030529: intracellular ribonucleoprotein complex3.01E-02
36GO:0046658: anchored component of plasma membrane3.30E-02
37GO:0005874: microtubule4.60E-02
Gene type



Gene DE type