Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G23400

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0015822: ornithine transport0.00E+00
2GO:0090706: specification of plant organ position0.00E+00
3GO:0006780: uroporphyrinogen III biosynthetic process0.00E+00
4GO:0006428: isoleucyl-tRNA aminoacylation0.00E+00
5GO:0017038: protein import0.00E+00
6GO:0000372: Group I intron splicing0.00E+00
7GO:0019265: glycine biosynthetic process, by transamination of glyoxylate0.00E+00
8GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
9GO:0006000: fructose metabolic process1.11E-05
10GO:0006094: gluconeogenesis3.88E-05
11GO:0010207: photosystem II assembly4.73E-05
12GO:0042549: photosystem II stabilization1.05E-04
13GO:0055114: oxidation-reduction process2.17E-04
14GO:0043609: regulation of carbon utilization2.57E-04
15GO:0000066: mitochondrial ornithine transport2.57E-04
16GO:0010028: xanthophyll cycle2.57E-04
17GO:0034337: RNA folding2.57E-04
18GO:0051013: microtubule severing2.57E-04
19GO:0010450: inflorescence meristem growth2.57E-04
20GO:0016119: carotene metabolic process2.57E-04
21GO:0000476: maturation of 4.5S rRNA2.57E-04
22GO:0000967: rRNA 5'-end processing2.57E-04
23GO:0097298: regulation of nucleus size2.57E-04
24GO:0043953: protein transport by the Tat complex2.57E-04
25GO:0010480: microsporocyte differentiation2.57E-04
26GO:0000481: maturation of 5S rRNA2.57E-04
27GO:0065002: intracellular protein transmembrane transport2.57E-04
28GO:0006002: fructose 6-phosphate metabolic process2.98E-04
29GO:0071482: cellular response to light stimulus2.98E-04
30GO:0048507: meristem development3.60E-04
31GO:0010205: photoinhibition4.27E-04
32GO:0016122: xanthophyll metabolic process5.68E-04
33GO:0080151: positive regulation of salicylic acid mediated signaling pathway5.68E-04
34GO:0030388: fructose 1,6-bisphosphate metabolic process5.68E-04
35GO:0034470: ncRNA processing5.68E-04
36GO:0035304: regulation of protein dephosphorylation5.68E-04
37GO:0016560: protein import into peroxisome matrix, docking5.68E-04
38GO:0034755: iron ion transmembrane transport5.68E-04
39GO:0009662: etioplast organization5.68E-04
40GO:0009773: photosynthetic electron transport in photosystem I5.76E-04
41GO:0009416: response to light stimulus8.31E-04
42GO:0045165: cell fate commitment9.22E-04
43GO:0000913: preprophase band assembly9.22E-04
44GO:0031022: nuclear migration along microfilament9.22E-04
45GO:0071230: cellular response to amino acid stimulus9.22E-04
46GO:0006013: mannose metabolic process9.22E-04
47GO:0043617: cellular response to sucrose starvation9.22E-04
48GO:0006515: misfolded or incompletely synthesized protein catabolic process1.32E-03
49GO:0061077: chaperone-mediated protein folding1.39E-03
50GO:0010109: regulation of photosynthesis1.76E-03
51GO:0045727: positive regulation of translation1.76E-03
52GO:0015994: chlorophyll metabolic process1.76E-03
53GO:0016117: carotenoid biosynthetic process1.95E-03
54GO:0006096: glycolytic process2.20E-03
55GO:0007094: mitotic spindle assembly checkpoint2.25E-03
56GO:1902183: regulation of shoot apical meristem development2.25E-03
57GO:0016123: xanthophyll biosynthetic process2.25E-03
58GO:0010158: abaxial cell fate specification2.25E-03
59GO:0016120: carotene biosynthetic process2.25E-03
60GO:0043097: pyrimidine nucleoside salvage2.25E-03
61GO:0009904: chloroplast accumulation movement2.25E-03
62GO:0045038: protein import into chloroplast thylakoid membrane2.25E-03
63GO:0010305: leaf vascular tissue pattern formation2.26E-03
64GO:0009646: response to absence of light2.43E-03
65GO:0006354: DNA-templated transcription, elongation2.77E-03
66GO:0010304: PSII associated light-harvesting complex II catabolic process2.77E-03
67GO:0000470: maturation of LSU-rRNA2.77E-03
68GO:0006086: acetyl-CoA biosynthetic process from pyruvate2.77E-03
69GO:0006206: pyrimidine nucleobase metabolic process2.77E-03
70GO:0000741: karyogamy2.77E-03
71GO:0016032: viral process2.98E-03
72GO:0009854: oxidative photosynthetic carbon pathway3.33E-03
73GO:0010067: procambium histogenesis3.33E-03
74GO:0009903: chloroplast avoidance movement3.33E-03
75GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway3.93E-03
76GO:0009772: photosynthetic electron transport in photosystem II3.93E-03
77GO:1900056: negative regulation of leaf senescence3.93E-03
78GO:0048437: floral organ development3.93E-03
79GO:1900057: positive regulation of leaf senescence3.93E-03
80GO:0016126: sterol biosynthetic process4.03E-03
81GO:0010492: maintenance of shoot apical meristem identity4.56E-03
82GO:0034968: histone lysine methylation4.56E-03
83GO:0048564: photosystem I assembly4.56E-03
84GO:0006402: mRNA catabolic process4.56E-03
85GO:0006605: protein targeting4.56E-03
86GO:0032508: DNA duplex unwinding4.56E-03
87GO:0015995: chlorophyll biosynthetic process4.74E-03
88GO:0010093: specification of floral organ identity5.22E-03
89GO:0009932: cell tip growth5.22E-03
90GO:0010100: negative regulation of photomorphogenesis5.22E-03
91GO:0006997: nucleus organization5.22E-03
92GO:0032544: plastid translation5.22E-03
93GO:0006098: pentose-phosphate shunt5.92E-03
94GO:0010206: photosystem II repair5.92E-03
95GO:2000024: regulation of leaf development5.92E-03
96GO:0000373: Group II intron splicing5.92E-03
97GO:0009910: negative regulation of flower development6.07E-03
98GO:0006779: porphyrin-containing compound biosynthetic process6.64E-03
99GO:0016571: histone methylation6.64E-03
100GO:0010380: regulation of chlorophyll biosynthetic process6.64E-03
101GO:0009853: photorespiration6.65E-03
102GO:0006782: protoporphyrinogen IX biosynthetic process7.40E-03
103GO:0006839: mitochondrial transport7.59E-03
104GO:0046856: phosphatidylinositol dephosphorylation8.19E-03
105GO:0006816: calcium ion transport8.19E-03
106GO:0019684: photosynthesis, light reaction8.19E-03
107GO:0006879: cellular iron ion homeostasis8.19E-03
108GO:0009750: response to fructose8.19E-03
109GO:0018119: peptidyl-cysteine S-nitrosylation8.19E-03
110GO:0048229: gametophyte development8.19E-03
111GO:0016485: protein processing8.19E-03
112GO:0005983: starch catabolic process9.00E-03
113GO:0009644: response to high light intensity9.29E-03
114GO:0009658: chloroplast organization9.74E-03
115GO:0018107: peptidyl-threonine phosphorylation9.85E-03
116GO:0009718: anthocyanin-containing compound biosynthetic process9.85E-03
117GO:0010075: regulation of meristem growth9.85E-03
118GO:0009767: photosynthetic electron transport chain9.85E-03
119GO:0005986: sucrose biosynthetic process9.85E-03
120GO:2000028: regulation of photoperiodism, flowering9.85E-03
121GO:0009934: regulation of meristem structural organization1.07E-02
122GO:0048768: root hair cell tip growth1.07E-02
123GO:0009933: meristem structural organization1.07E-02
124GO:0019253: reductive pentose-phosphate cycle1.07E-02
125GO:0010223: secondary shoot formation1.07E-02
126GO:0010053: root epidermal cell differentiation1.16E-02
127GO:0009825: multidimensional cell growth1.16E-02
128GO:0006364: rRNA processing1.16E-02
129GO:0006636: unsaturated fatty acid biosynthetic process1.25E-02
130GO:2000377: regulation of reactive oxygen species metabolic process1.35E-02
131GO:0009944: polarity specification of adaxial/abaxial axis1.35E-02
132GO:0006289: nucleotide-excision repair1.35E-02
133GO:0006418: tRNA aminoacylation for protein translation1.45E-02
134GO:0006874: cellular calcium ion homeostasis1.45E-02
135GO:0043622: cortical microtubule organization1.45E-02
136GO:0015979: photosynthesis1.52E-02
137GO:0051321: meiotic cell cycle1.55E-02
138GO:0080092: regulation of pollen tube growth1.65E-02
139GO:0055085: transmembrane transport1.73E-02
140GO:0001944: vasculature development1.76E-02
141GO:0009686: gibberellin biosynthetic process1.76E-02
142GO:0071369: cellular response to ethylene stimulus1.76E-02
143GO:0040007: growth1.76E-02
144GO:0010089: xylem development1.86E-02
145GO:0010091: trichome branching1.86E-02
146GO:0048653: anther development2.09E-02
147GO:0042631: cellular response to water deprivation2.09E-02
148GO:0000226: microtubule cytoskeleton organization2.09E-02
149GO:0006629: lipid metabolic process2.10E-02
150GO:0006810: transport2.13E-02
151GO:0010268: brassinosteroid homeostasis2.20E-02
152GO:0071472: cellular response to salt stress2.20E-02
153GO:0010154: fruit development2.20E-02
154GO:0010197: polar nucleus fusion2.20E-02
155GO:0005975: carbohydrate metabolic process2.25E-02
156GO:0007018: microtubule-based movement2.32E-02
157GO:0007059: chromosome segregation2.32E-02
158GO:0016132: brassinosteroid biosynthetic process2.56E-02
159GO:0006413: translational initiation2.67E-02
160GO:0009630: gravitropism2.68E-02
161GO:0030163: protein catabolic process2.80E-02
162GO:0010090: trichome morphogenesis2.80E-02
163GO:0007623: circadian rhythm2.87E-02
164GO:0009567: double fertilization forming a zygote and endosperm2.93E-02
165GO:0016125: sterol metabolic process2.93E-02
166GO:0071805: potassium ion transmembrane transport3.06E-02
167GO:0000910: cytokinesis3.19E-02
168GO:0001666: response to hypoxia3.32E-02
169GO:0010027: thylakoid membrane organization3.32E-02
170GO:0009735: response to cytokinin3.83E-02
171GO:0016311: dephosphorylation3.87E-02
172GO:0009737: response to abscisic acid3.96E-02
173GO:0048481: plant ovule development4.01E-02
174GO:0018298: protein-chromophore linkage4.01E-02
175GO:0009832: plant-type cell wall biogenesis4.16E-02
176GO:0006499: N-terminal protein myristoylation4.30E-02
177GO:0006811: ion transport4.30E-02
178GO:0048527: lateral root development4.45E-02
179GO:0009631: cold acclimation4.45E-02
180GO:0042254: ribosome biogenesis4.50E-02
181GO:0045087: innate immune response4.75E-02
182GO:0051301: cell division4.75E-02
RankGO TermAdjusted P value
1GO:0008465: glycerate dehydrogenase activity0.00E+00
2GO:0004852: uroporphyrinogen-III synthase activity0.00E+00
3GO:0050281: serine-glyoxylate transaminase activity0.00E+00
4GO:0046608: carotenoid isomerase activity0.00E+00
5GO:0045436: lycopene beta cyclase activity0.00E+00
6GO:0046422: violaxanthin de-epoxidase activity0.00E+00
7GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
8GO:0047538: 2-carboxy-D-arabinitol-1-phosphatase activity0.00E+00
9GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
10GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
11GO:0008974: phosphoribulokinase activity0.00E+00
12GO:0004822: isoleucine-tRNA ligase activity0.00E+00
13GO:0004760: serine-pyruvate transaminase activity0.00E+00
14GO:0004506: squalene monooxygenase activity4.54E-05
15GO:0008266: poly(U) RNA binding4.73E-05
16GO:0005528: FK506 binding7.91E-05
17GO:0004332: fructose-bisphosphate aldolase activity1.05E-04
18GO:0016491: oxidoreductase activity1.44E-04
19GO:0051777: ent-kaurenoate oxidase activity2.57E-04
20GO:0004856: xylulokinase activity2.57E-04
21GO:0008066: glutamate receptor activity2.57E-04
22GO:0010242: oxygen evolving activity2.57E-04
23GO:0008568: microtubule-severing ATPase activity2.57E-04
24GO:0010291: carotene beta-ring hydroxylase activity5.68E-04
25GO:0005094: Rho GDP-dissociation inhibitor activity5.68E-04
26GO:0009977: proton motive force dependent protein transmembrane transporter activity5.68E-04
27GO:0004312: fatty acid synthase activity5.68E-04
28GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity5.68E-04
29GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity5.68E-04
30GO:0000064: L-ornithine transmembrane transporter activity5.68E-04
31GO:0019172: glyoxalase III activity5.68E-04
32GO:0004565: beta-galactosidase activity7.47E-04
33GO:0010429: methyl-CpNpN binding9.22E-04
34GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity9.22E-04
35GO:0003863: 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity9.22E-04
36GO:0015462: ATPase-coupled protein transmembrane transporter activity9.22E-04
37GO:0004180: carboxypeptidase activity9.22E-04
38GO:0010428: methyl-CpNpG binding9.22E-04
39GO:0002161: aminoacyl-tRNA editing activity9.22E-04
40GO:0008253: 5'-nucleotidase activity9.22E-04
41GO:0004148: dihydrolipoyl dehydrogenase activity9.22E-04
42GO:0016805: dipeptidase activity9.22E-04
43GO:0008017: microtubule binding1.12E-03
44GO:0019201: nucleotide kinase activity1.32E-03
45GO:0004176: ATP-dependent peptidase activity1.39E-03
46GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.48E-03
47GO:0016787: hydrolase activity1.74E-03
48GO:0004739: pyruvate dehydrogenase (acetyl-transferring) activity1.76E-03
49GO:0008453: alanine-glyoxylate transaminase activity1.76E-03
50GO:0070628: proteasome binding1.76E-03
51GO:0016773: phosphotransferase activity, alcohol group as acceptor2.25E-03
52GO:2001070: starch binding2.77E-03
53GO:0031593: polyubiquitin binding2.77E-03
54GO:0034485: phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity2.77E-03
55GO:0000293: ferric-chelate reductase activity2.77E-03
56GO:0004462: lactoylglutathione lyase activity2.77E-03
57GO:0042578: phosphoric ester hydrolase activity2.77E-03
58GO:0004559: alpha-mannosidase activity3.33E-03
59GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity3.33E-03
60GO:0004017: adenylate kinase activity3.33E-03
61GO:0004849: uridine kinase activity3.33E-03
62GO:0004602: glutathione peroxidase activity3.33E-03
63GO:0005524: ATP binding5.06E-03
64GO:0005515: protein binding5.78E-03
65GO:0071949: FAD binding5.92E-03
66GO:0000989: transcription factor activity, transcription factor binding5.92E-03
67GO:0005381: iron ion transmembrane transporter activity6.64E-03
68GO:0042626: ATPase activity, coupled to transmembrane movement of substances7.58E-03
69GO:0042802: identical protein binding7.58E-03
70GO:0044183: protein binding involved in protein folding8.19E-03
71GO:0005089: Rho guanyl-nucleotide exchange factor activity8.19E-03
72GO:0019904: protein domain specific binding8.19E-03
73GO:0008327: methyl-CpG binding8.19E-03
74GO:0004439: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity9.00E-03
75GO:0000049: tRNA binding9.00E-03
76GO:0031072: heat shock protein binding9.85E-03
77GO:0005262: calcium channel activity9.85E-03
78GO:0008081: phosphoric diester hydrolase activity9.85E-03
79GO:0004970: ionotropic glutamate receptor activity1.16E-02
80GO:0005217: intracellular ligand-gated ion channel activity1.16E-02
81GO:0050660: flavin adenine dinucleotide binding1.17E-02
82GO:0016298: lipase activity1.20E-02
83GO:0003777: microtubule motor activity1.29E-02
84GO:0003954: NADH dehydrogenase activity1.35E-02
85GO:0043130: ubiquitin binding1.35E-02
86GO:0015079: potassium ion transmembrane transporter activity1.45E-02
87GO:0033612: receptor serine/threonine kinase binding1.55E-02
88GO:0022891: substrate-specific transmembrane transporter activity1.76E-02
89GO:0004812: aminoacyl-tRNA ligase activity1.97E-02
90GO:0018024: histone-lysine N-methyltransferase activity1.97E-02
91GO:0019843: rRNA binding2.07E-02
92GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.13E-02
93GO:0050662: coenzyme binding2.32E-02
94GO:0003684: damaged DNA binding2.93E-02
95GO:0008483: transaminase activity3.06E-02
96GO:0008237: metallopeptidase activity3.06E-02
97GO:0003743: translation initiation factor activity3.34E-02
98GO:0016168: chlorophyll binding3.46E-02
99GO:0008236: serine-type peptidase activity3.87E-02
100GO:0003824: catalytic activity3.95E-02
101GO:0005096: GTPase activator activity4.16E-02
102GO:0015238: drug transmembrane transporter activity4.16E-02
103GO:0008168: methyltransferase activity4.26E-02
104GO:0004222: metalloendopeptidase activity4.30E-02
105GO:0050897: cobalt ion binding4.45E-02
106GO:0003746: translation elongation factor activity4.75E-02
RankGO TermAdjusted P value
1GO:0043235: receptor complex0.00E+00
2GO:0043233: organelle lumen0.00E+00
3GO:0009507: chloroplast7.24E-20
4GO:0009535: chloroplast thylakoid membrane4.56E-12
5GO:0009570: chloroplast stroma1.28E-11
6GO:0009534: chloroplast thylakoid7.59E-10
7GO:0009941: chloroplast envelope1.41E-08
8GO:0009543: chloroplast thylakoid lumen4.69E-07
9GO:0009579: thylakoid1.02E-06
10GO:0030095: chloroplast photosystem II4.73E-05
11GO:0031361: integral component of thylakoid membrane2.57E-04
12GO:0000428: DNA-directed RNA polymerase complex2.57E-04
13GO:0009344: nitrite reductase complex [NAD(P)H]2.57E-04
14GO:0080085: signal recognition particle, chloroplast targeting5.68E-04
15GO:0031304: intrinsic component of mitochondrial inner membrane5.68E-04
16GO:0005782: peroxisomal matrix9.22E-04
17GO:0005652: nuclear lamina9.22E-04
18GO:0033281: TAT protein transport complex9.22E-04
19GO:0009654: photosystem II oxygen evolving complex1.27E-03
20GO:0005828: kinetochore microtubule1.76E-03
21GO:0048046: apoplast2.25E-03
22GO:0000776: kinetochore2.25E-03
23GO:0019898: extrinsic component of membrane2.61E-03
24GO:0005874: microtubule2.66E-03
25GO:0000777: condensed chromosome kinetochore3.33E-03
26GO:0010287: plastoglobule3.46E-03
27GO:0030529: intracellular ribonucleoprotein complex4.03E-03
28GO:0005777: peroxisome4.10E-03
29GO:0034399: nuclear periphery4.56E-03
30GO:0005786: signal recognition particle, endoplasmic reticulum targeting5.22E-03
31GO:0005763: mitochondrial small ribosomal subunit5.92E-03
32GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)5.92E-03
33GO:0008180: COP9 signalosome5.92E-03
34GO:0005876: spindle microtubule6.64E-03
35GO:0055028: cortical microtubule7.40E-03
36GO:0016324: apical plasma membrane7.40E-03
37GO:0031977: thylakoid lumen7.91E-03
38GO:0032040: small-subunit processome9.00E-03
39GO:0000312: plastid small ribosomal subunit1.07E-02
40GO:0031969: chloroplast membrane1.28E-02
41GO:0009532: plastid stroma1.55E-02
42GO:0009536: plastid1.57E-02
43GO:0000775: chromosome, centromeric region1.65E-02
44GO:0005871: kinesin complex1.97E-02
45GO:0005623: cell2.13E-02
46GO:0009524: phragmoplast2.19E-02
47GO:0009523: photosystem II2.43E-02
48GO:0009504: cell plate2.43E-02
49GO:0031965: nuclear membrane2.43E-02
50GO:0005759: mitochondrial matrix2.61E-02
51GO:0005694: chromosome2.68E-02
52GO:0010319: stromule3.06E-02
53GO:0009295: nucleoid3.06E-02
54GO:0019005: SCF ubiquitin ligase complex4.01E-02
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Gene type



Gene DE type