gene detail

Gene description

TAIR ID: AT1G19850

Short description: Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related

Pathogen responsiveness: -1.07

General responsiveness: -0.89

Orthologous

Rice: No orthologous gene

Maize:

GRMZM2G034840

Wheat: No orthologous gene

GO biological process

response to auxin, leaf vascular tissue pattern formation, auxin-activated signaling pathway, transcription, DNA-templated, regulation of transcription, flower development, longitudinal axis specification, meristem development, xylem and phloem pattern formation, root development, embryo development

GO cellular component

nucleus, membrane

GO molecular function

protein binding, transcription factor activity, sequence-specific DNA binding, identical protein binding

Protein domain

Pfam	PF02309, AUX/IAA family
Pfam	PF02362, B3 DNA binding domain
Pfam	PF06507, Auxin response factor
SMART	SM01019, B3

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:ath04075: Plant hormone signal transduction

Transcriptional regulation

Regulator:
AT5G13790, AT1G24260, AT1G19850, AT4G36990

Target:
AT4G11280, AT3G20840, AT1G71930, AT1G19850, AT4G37770, AT1G12980, AT1G73590, AT1G04550, AT1G01480, AT4G32880

Protein-protein interaction network

The number of partners (degree) is: 40 (Top5%)

click to view PPI network

Coexpression network

GSE56094_WT_HRPA-  view
GSE13739_WT_GO  view
GSE5686_WT_GO  view
GSE56094_WT_PSTDC3000  view

Differentially expressed condition

9 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	1.56	1.17E-02
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	1.94	2.12E-03
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	1.88	3.17E-03
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	2.18	5.82E-06
GSE56094	Col, WT, control 11 h	Col, WT, PstDC3000 11 h	1.69	1.49E-06
GSE56094	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	2.63	1.92E-12
GSE56094	Col, WT, control 13 h	Col, WT, PstDC3000 13 h	1.65	1.97E-06
GSE56094	Col, WT, control 9 h	Col, WT, PstDC3000 9 h	1.80	5.54E-07
GSE6176	Col, WT, control 12 h	Col, WT, PstDC3000 12 h	2.13	3.43E-02