gene detail

Gene description

TAIR ID: AT1G10910

Short description: Pentatricopeptide repeat (PPR) superfamily protein

Pathogen responsiveness: -0.25

General responsiveness: -0.33

Orthologous

Rice:

OS01G0559500

Maize:

GRMZM2G093098

Wheat: No orthologous gene

GO biological process

RNA modification

GO cellular component

mitochondrion, intracellular membrane-bounded organelle, chloroplast

GO molecular function

endonuclease activity, RNA binding

Protein domain

Pfam	PF13812, Pentatricopeptide repeat domain
Pfam	PF13041, PPR repeat family
Pfam	PF01535, PPR repeat

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

Not involved in KEGG pathway

Transcriptional regulation

Regulator:
AT2G38250, AT1G24260, AT5G41315

Target:
none

Protein-protein interaction network

No Interactor

Coexpression network

GSE45212_WT_PSTDC3000_AVRRPT2  view
GSE26679_WT_GC  view
GSE13739_WT_GO  view
GSE13739_EDS16_GO  view
GSE5686_WT_GO  view
GSE45212_MED14_PSTDC3000_AVRRPT2  view
GSE26679_EDR1_GC  view

Differentially expressed condition

19 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE12856	Col, WT, control	Col, WT, Bg h	-1.62	9.77E-08
GSE17464	Laer, control	Laer, Alternaria brassicicola 3 d	1.64	1.59E-06
GSE17500	Col, 35S:AFB1, control 0 h	Col, 35S:AFB1, PstDC3000 24 h	-2.01	7.42E-05
GSE17500	Col, WT, control 0 h	Col, WT, PstDC3000 24 h	-2.26	1.44E-05
GSE17500	Col, miR393, control 0 h	Col, miR393, PstDC3000 24 h	-2.15	3.60E-05
GSE18978	Col, WT, control 24 h	Col, WT, PsmES4326 24 h	-2.80	2.93E-12
GSE21920	Col, WT, mock	Col, WT, Pto HopZ1a 6 h	-1.65	9.30E-07
GSE37269	Ei2, WT, control	Ei2, WT, TEV 21 d	-2.20	5.74E-03
GSE37269	St0, WT, control	St0, WT, TEV 21 d	-2.06	5.81E-03
GSE40544	Col, WT, control	Col, WT, PstDC3000 EV	-1.51	7.01E-06
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 12 h	-2.10	3.19E-13
GSE45212	Col, WT, PstDC3000 AvrRpt2 0 h	Col, WT, PstDC3000 AvrRpt2 8 h	-1.94	1.52E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 12 h	-2.22	1.73E-13
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 4 h	-1.77	5.14E-12
GSE45212	Col, med14, PstDC3000 AvrRpt2 0 h	Col, med14, PstDC3000 AvrRpt2 8 h	-2.42	4.58E-14
GSE45214	Col, med16, PstDC3000 AvrRpt2 0 h	Col, med16, PstDC3000 AvrRpt2 4 h	-2.08	3.74E-12
GSE5520	Col, WT, control 10 h	Col, WT, Cor- 10 h	-2.38	7.50E-06
GSE5520	Col, WT, control 7 h	Col, WT, PstDC3000 7 h	-1.99	4.59E-06
GSE58954	Col, WT, Psm AvrRpt2 0 h	Col, WT, Psm AvrRpt2 6 h	-2.19	1.80E-03