co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT1G10910

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0099131: ATP hydrolysis coupled ion transmembrane transport	0.00E+00
2	GO:0006399: tRNA metabolic process	0.00E+00
3	GO:0090042: tubulin deacetylation	0.00E+00
4	GO:0071482: cellular response to light stimulus	1.66E-05
5	GO:0006352: DNA-templated transcription, initiation	3.76E-05
6	GO:0080005: photosystem stoichiometry adjustment	9.72E-05
7	GO:0009662: etioplast organization	9.72E-05
8	GO:0071457: cellular response to ozone	9.72E-05
9	GO:0045910: negative regulation of DNA recombination	1.68E-04
10	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	1.68E-04
11	GO:0055070: copper ion homeostasis	2.48E-04
12	GO:2001141: regulation of RNA biosynthetic process	2.48E-04
13	GO:0071484: cellular response to light intensity	2.48E-04
14	GO:0009152: purine ribonucleotide biosynthetic process	2.48E-04
15	GO:0046653: tetrahydrofolate metabolic process	2.48E-04
16	GO:0006546: glycine catabolic process	3.33E-04
17	GO:0071483: cellular response to blue light	3.33E-04
18	GO:0071486: cellular response to high light intensity	3.33E-04
19	GO:0000304: response to singlet oxygen	4.25E-04
20	GO:0006564: L-serine biosynthetic process	4.25E-04
21	GO:0045038: protein import into chloroplast thylakoid membrane	4.25E-04
22	GO:0035434: copper ion transmembrane transport	4.25E-04
23	GO:0006461: protein complex assembly	4.25E-04
24	GO:0009107: lipoate biosynthetic process	4.25E-04
25	GO:0071493: cellular response to UV-B	4.25E-04
26	GO:0042549: photosystem II stabilization	5.22E-04
27	GO:0000470: maturation of LSU-rRNA	5.22E-04
28	GO:0010019: chloroplast-nucleus signaling pathway	6.22E-04
29	GO:0006400: tRNA modification	7.28E-04
30	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	7.28E-04
31	GO:0019430: removal of superoxide radicals	9.50E-04
32	GO:0009657: plastid organization	9.50E-04
33	GO:0000373: Group II intron splicing	1.07E-03
34	GO:0006098: pentose-phosphate shunt	1.07E-03
35	GO:0006298: mismatch repair	1.31E-03
36	GO:0009073: aromatic amino acid family biosynthetic process	1.44E-03
37	GO:0009773: photosynthetic electron transport in photosystem I	1.44E-03
38	GO:0010628: positive regulation of gene expression	1.72E-03
39	GO:0006094: gluconeogenesis	1.72E-03
40	GO:0009767: photosynthetic electron transport chain	1.72E-03
41	GO:0090351: seedling development	2.01E-03
42	GO:0016575: histone deacetylation	2.48E-03
43	GO:0031408: oxylipin biosynthetic process	2.64E-03
44	GO:0016117: carotenoid biosynthetic process	3.32E-03
45	GO:0071472: cellular response to salt stress	3.69E-03
46	GO:0015979: photosynthesis	4.82E-03
47	GO:0001666: response to hypoxia	5.47E-03
48	GO:0055114: oxidation-reduction process	5.53E-03
49	GO:0015995: chlorophyll biosynthetic process	6.13E-03
50	GO:0009637: response to blue light	7.75E-03
51	GO:0009853: photorespiration	7.75E-03
52	GO:0030001: metal ion transport	8.48E-03
53	GO:0010114: response to red light	9.25E-03
54	GO:0006855: drug transmembrane transport	1.03E-02
55	GO:0006364: rRNA processing	1.14E-02
56	GO:0045893: positive regulation of transcription, DNA-templated	1.27E-02
57	GO:0006096: glycolytic process	1.28E-02
58	GO:0009058: biosynthetic process	1.78E-02
59	GO:0006413: translational initiation	2.05E-02
60	GO:0010468: regulation of gene expression	2.45E-02
61	GO:0009658: chloroplast organization	2.94E-02
62	GO:0042254: ribosome biogenesis	2.98E-02
63	GO:0005975: carbohydrate metabolic process	3.41E-02
64	GO:0046777: protein autophosphorylation	3.60E-02
65	GO:0006397: mRNA processing	4.66E-02

Rank	GO Term	Adjusted P value
1	GO:0043014: alpha-tubulin binding	0.00E+00
2	GO:0033947: mannosylglycoprotein endo-beta-mannosidase activity	0.00E+00
3	GO:0005048: signal sequence binding	0.00E+00
4	GO:0046608: carotenoid isomerase activity	0.00E+00
5	GO:0000979: RNA polymerase II core promoter sequence-specific DNA binding	0.00E+00
6	GO:0051721: protein phosphatase 2A binding	0.00E+00
7	GO:0042903: tubulin deacetylase activity	0.00E+00
8	GO:0001053: plastid sigma factor activity	1.81E-06
9	GO:0016987: sigma factor activity	1.81E-06
10	GO:0005528: FK506 binding	8.70E-05
11	GO:0004617: phosphoglycerate dehydrogenase activity	9.72E-05
12	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.68E-04
13	GO:0008864: formyltetrahydrofolate deformylase activity	1.68E-04
14	GO:0016531: copper chaperone activity	1.68E-04
15	GO:0019829: cation-transporting ATPase activity	1.68E-04
16	GO:0016992: lipoate synthase activity	1.68E-04
17	GO:0048487: beta-tubulin binding	2.48E-04
18	GO:0030983: mismatched DNA binding	5.22E-04
19	GO:0004332: fructose-bisphosphate aldolase activity	5.22E-04
20	GO:0004784: superoxide dismutase activity	5.22E-04
21	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	8.17E-04
22	GO:0043022: ribosome binding	8.37E-04
23	GO:0008312: 7S RNA binding	8.37E-04
24	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	9.36E-04
25	GO:0032041: NAD-dependent histone deacetylase activity (H3-K14 specific)	9.50E-04
26	GO:0005375: copper ion transmembrane transporter activity	9.50E-04
27	GO:0015386: potassium:proton antiporter activity	1.44E-03
28	GO:0004022: alcohol dehydrogenase (NAD) activity	1.72E-03
29	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.72E-03
30	GO:0004407: histone deacetylase activity	2.32E-03
31	GO:0015079: potassium ion transmembrane transporter activity	2.48E-03
32	GO:0003684: damaged DNA binding	4.85E-03
33	GO:0016597: amino acid binding	5.26E-03
34	GO:0009055: electron carrier activity	6.68E-03
35	GO:0015238: drug transmembrane transporter activity	6.80E-03
36	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	7.27E-03
37	GO:0003746: translation elongation factor activity	7.75E-03
38	GO:0043621: protein self-association	9.77E-03
39	GO:0005198: structural molecule activity	1.00E-02
40	GO:0051287: NAD binding	1.06E-02
41	GO:0000166: nucleotide binding	1.11E-02
42	GO:0016874: ligase activity	1.40E-02
43	GO:0019843: rRNA binding	1.72E-02
44	GO:0005525: GTP binding	1.82E-02
45	GO:0015297: antiporter activity	2.09E-02
46	GO:0003743: translation initiation factor activity	2.41E-02
47	GO:0000287: magnesium ion binding	2.90E-02
48	GO:0016491: oxidoreductase activity	2.96E-02
49	GO:0050660: flavin adenine dinucleotide binding	3.27E-02
50	GO:0003924: GTPase activity	4.53E-02
51	GO:0004519: endonuclease activity	4.80E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	4.23E-19
2	GO:0009543: chloroplast thylakoid lumen	1.42E-07
3	GO:0009535: chloroplast thylakoid membrane	6.12E-07
4	GO:0031969: chloroplast membrane	1.91E-06
5	GO:0009570: chloroplast stroma	2.85E-05
6	GO:0031977: thylakoid lumen	3.25E-05
7	GO:0009941: chloroplast envelope	7.28E-05
8	GO:0080085: signal recognition particle, chloroplast targeting	9.72E-05
9	GO:0009579: thylakoid	3.15E-04
10	GO:0009534: chloroplast thylakoid	3.20E-04
11	GO:0009533: chloroplast stromal thylakoid	7.28E-04
12	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	9.50E-04
13	GO:0030095: chloroplast photosystem II	1.86E-03
14	GO:0043234: protein complex	2.16E-03
15	GO:0009523: photosystem II	4.06E-03
16	GO:0030529: intracellular ribonucleoprotein complex	5.47E-03
17	GO:0009707: chloroplast outer membrane	6.58E-03
18	GO:0010287: plastoglobule	1.65E-02
19	GO:0005759: mitochondrial matrix	2.02E-02
20	GO:0005840: ribosome	2.36E-02
21	GO:0009536: plastid	2.76E-02
22	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	3.14E-02
23	GO:0022625: cytosolic large ribosomal subunit	3.56E-02