Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT1G10910

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
2GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate0.00E+00
3GO:0009606: tropism0.00E+00
4GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
5GO:1903224: regulation of endodermal cell differentiation0.00E+00
6GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
7GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
8GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
9GO:0007638: mechanosensory behavior0.00E+00
10GO:0097164: ammonium ion metabolic process0.00E+00
11GO:0045184: establishment of protein localization0.00E+00
12GO:0015843: methylammonium transport0.00E+00
13GO:0031222: arabinan catabolic process0.00E+00
14GO:0070979: protein K11-linked ubiquitination0.00E+00
15GO:0046620: regulation of organ growth2.09E-08
16GO:0009734: auxin-activated signaling pathway3.74E-06
17GO:0009733: response to auxin6.49E-06
18GO:0042793: transcription from plastid promoter1.77E-05
19GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.26E-05
20GO:0009926: auxin polar transport4.50E-05
21GO:2000038: regulation of stomatal complex development2.48E-04
22GO:0046656: folic acid biosynthetic process2.48E-04
23GO:0045037: protein import into chloroplast stroma2.95E-04
24GO:2000012: regulation of auxin polar transport3.52E-04
25GO:0032876: negative regulation of DNA endoreduplication3.71E-04
26GO:0009658: chloroplast organization4.56E-04
27GO:0005992: trehalose biosynthetic process6.39E-04
28GO:0040008: regulation of growth6.45E-04
29GO:0046654: tetrahydrofolate biosynthetic process6.83E-04
30GO:0034757: negative regulation of iron ion transport7.15E-04
31GO:0042659: regulation of cell fate specification7.15E-04
32GO:0070509: calcium ion import7.15E-04
33GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process7.15E-04
34GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic7.15E-04
35GO:0010480: microsporocyte differentiation7.15E-04
36GO:0090558: plant epidermis development7.15E-04
37GO:0042371: vitamin K biosynthetic process7.15E-04
38GO:1903866: palisade mesophyll development7.15E-04
39GO:0035987: endodermal cell differentiation7.15E-04
40GO:0043609: regulation of carbon utilization7.15E-04
41GO:0006436: tryptophanyl-tRNA aminoacylation7.15E-04
42GO:0000066: mitochondrial ornithine transport7.15E-04
43GO:0015904: tetracycline transport7.15E-04
44GO:0000160: phosphorelay signal transduction system8.75E-04
45GO:0000105: histidine biosynthetic process1.08E-03
46GO:0006002: fructose 6-phosphate metabolic process1.32E-03
47GO:0007389: pattern specification process1.32E-03
48GO:0009657: plastid organization1.32E-03
49GO:0070981: L-asparagine biosynthetic process1.54E-03
50GO:0010271: regulation of chlorophyll catabolic process1.54E-03
51GO:0018026: peptidyl-lysine monomethylation1.54E-03
52GO:1902326: positive regulation of chlorophyll biosynthetic process1.54E-03
53GO:0010569: regulation of double-strand break repair via homologous recombination1.54E-03
54GO:0071497: cellular response to freezing1.54E-03
55GO:0009662: etioplast organization1.54E-03
56GO:1900033: negative regulation of trichome patterning1.54E-03
57GO:0042325: regulation of phosphorylation1.54E-03
58GO:1904143: positive regulation of carotenoid biosynthetic process1.54E-03
59GO:0080009: mRNA methylation1.54E-03
60GO:0009786: regulation of asymmetric cell division1.54E-03
61GO:0006529: asparagine biosynthetic process1.54E-03
62GO:2000123: positive regulation of stomatal complex development1.54E-03
63GO:0000373: Group II intron splicing1.58E-03
64GO:0031425: chloroplast RNA processing1.87E-03
65GO:0006535: cysteine biosynthetic process from serine2.19E-03
66GO:0045036: protein targeting to chloroplast2.19E-03
67GO:0010583: response to cyclopentenone2.20E-03
68GO:0080117: secondary growth2.55E-03
69GO:0090708: specification of plant organ axis polarity2.55E-03
70GO:0090391: granum assembly2.55E-03
71GO:0031145: anaphase-promoting complex-dependent catabolic process2.55E-03
72GO:0006000: fructose metabolic process2.55E-03
73GO:0042780: tRNA 3'-end processing2.55E-03
74GO:0001578: microtubule bundle formation2.55E-03
75GO:0006760: folic acid-containing compound metabolic process2.55E-03
76GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic2.55E-03
77GO:0010252: auxin homeostasis2.59E-03
78GO:0009828: plant-type cell wall loosening2.59E-03
79GO:0009736: cytokinin-activated signaling pathway2.72E-03
80GO:0010027: thylakoid membrane organization3.25E-03
81GO:0009767: photosynthetic electron transport chain3.32E-03
82GO:0051639: actin filament network formation3.71E-03
83GO:0010306: rhamnogalacturonan II biosynthetic process3.71E-03
84GO:0044211: CTP salvage3.71E-03
85GO:0015696: ammonium transport3.71E-03
86GO:0046739: transport of virus in multicellular host3.71E-03
87GO:0019048: modulation by virus of host morphology or physiology3.71E-03
88GO:2000904: regulation of starch metabolic process3.71E-03
89GO:0051289: protein homotetramerization3.71E-03
90GO:0031048: chromatin silencing by small RNA3.71E-03
91GO:1902476: chloride transmembrane transport3.71E-03
92GO:0051513: regulation of monopolar cell growth3.71E-03
93GO:0007231: osmosensory signaling pathway3.71E-03
94GO:0030071: regulation of mitotic metaphase/anaphase transition3.71E-03
95GO:0070588: calcium ion transmembrane transport4.21E-03
96GO:0006468: protein phosphorylation4.79E-03
97GO:0051764: actin crosslink formation5.01E-03
98GO:0030104: water homeostasis5.01E-03
99GO:0051322: anaphase5.01E-03
100GO:0033500: carbohydrate homeostasis5.01E-03
101GO:0072488: ammonium transmembrane transport5.01E-03
102GO:0022622: root system development5.01E-03
103GO:0006021: inositol biosynthetic process5.01E-03
104GO:0051567: histone H3-K9 methylation5.01E-03
105GO:0006346: methylation-dependent chromatin silencing5.01E-03
106GO:0044206: UMP salvage5.01E-03
107GO:1901141: regulation of lignin biosynthetic process5.01E-03
108GO:0048629: trichome patterning5.01E-03
109GO:0009742: brassinosteroid mediated signaling pathway5.13E-03
110GO:0019344: cysteine biosynthetic process5.22E-03
111GO:0009416: response to light stimulus6.15E-03
112GO:0006306: DNA methylation6.35E-03
113GO:0016998: cell wall macromolecule catabolic process6.35E-03
114GO:0010158: abaxial cell fate specification6.45E-03
115GO:0030308: negative regulation of cell growth6.45E-03
116GO:0010375: stomatal complex patterning6.45E-03
117GO:0010236: plastoquinone biosynthetic process6.45E-03
118GO:0009107: lipoate biosynthetic process6.45E-03
119GO:1902183: regulation of shoot apical meristem development6.45E-03
120GO:0016123: xanthophyll biosynthetic process6.45E-03
121GO:0009831: plant-type cell wall modification involved in multidimensional cell growth7.60E-03
122GO:0010082: regulation of root meristem growth7.60E-03
123GO:0006655: phosphatidylglycerol biosynthetic process8.01E-03
124GO:1902456: regulation of stomatal opening8.01E-03
125GO:0048831: regulation of shoot system development8.01E-03
126GO:0016458: gene silencing8.01E-03
127GO:0010315: auxin efflux8.01E-03
128GO:0006206: pyrimidine nucleobase metabolic process8.01E-03
129GO:0018258: protein O-linked glycosylation via hydroxyproline8.01E-03
130GO:0009228: thiamine biosynthetic process8.01E-03
131GO:0010405: arabinogalactan protein metabolic process8.01E-03
132GO:0009790: embryo development8.38E-03
133GO:0042372: phylloquinone biosynthetic process9.69E-03
134GO:0071470: cellular response to osmotic stress9.69E-03
135GO:0009942: longitudinal axis specification9.69E-03
136GO:0010067: procambium histogenesis9.69E-03
137GO:0048509: regulation of meristem development9.69E-03
138GO:0030488: tRNA methylation9.69E-03
139GO:1901259: chloroplast rRNA processing9.69E-03
140GO:2000037: regulation of stomatal complex patterning9.69E-03
141GO:2000067: regulation of root morphogenesis9.69E-03
142GO:0010087: phloem or xylem histogenesis9.72E-03
143GO:0009958: positive gravitropism1.05E-02
144GO:0048868: pollen tube development1.05E-02
145GO:0009741: response to brassinosteroid1.05E-02
146GO:0009646: response to absence of light1.13E-02
147GO:0048528: post-embryonic root development1.15E-02
148GO:0007050: cell cycle arrest1.15E-02
149GO:0009772: photosynthetic electron transport in photosystem II1.15E-02
150GO:0006821: chloride transport1.15E-02
151GO:0010050: vegetative phase change1.15E-02
152GO:0048437: floral organ development1.15E-02
153GO:0010444: guard mother cell differentiation1.15E-02
154GO:0030307: positive regulation of cell growth1.15E-02
155GO:0009396: folic acid-containing compound biosynthetic process1.15E-02
156GO:0010103: stomatal complex morphogenesis1.15E-02
157GO:0009664: plant-type cell wall organization1.15E-02
158GO:0032880: regulation of protein localization1.15E-02
159GO:0009610: response to symbiotic fungus1.15E-02
160GO:0006955: immune response1.15E-02
161GO:0009850: auxin metabolic process1.34E-02
162GO:0009787: regulation of abscisic acid-activated signaling pathway1.34E-02
163GO:0032875: regulation of DNA endoreduplication1.34E-02
164GO:0048766: root hair initiation1.34E-02
165GO:0070413: trehalose metabolism in response to stress1.34E-02
166GO:0055075: potassium ion homeostasis1.34E-02
167GO:0032502: developmental process1.39E-02
168GO:0009827: plant-type cell wall modification1.54E-02
169GO:0032544: plastid translation1.54E-02
170GO:0010497: plasmodesmata-mediated intercellular transport1.54E-02
171GO:0009051: pentose-phosphate shunt, oxidative branch1.75E-02
172GO:2000024: regulation of leaf development1.75E-02
173GO:0000902: cell morphogenesis1.75E-02
174GO:0051607: defense response to virus1.78E-02
175GO:0042761: very long-chain fatty acid biosynthetic process1.98E-02
176GO:2000280: regulation of root development1.98E-02
177GO:0009638: phototropism1.98E-02
178GO:0009826: unidimensional cell growth1.98E-02
179GO:0006974: cellular response to DNA damage stimulus2.11E-02
180GO:0030422: production of siRNA involved in RNA interference2.21E-02
181GO:0048829: root cap development2.21E-02
182GO:0009641: shade avoidance2.21E-02
183GO:0006949: syncytium formation2.21E-02
184GO:0006259: DNA metabolic process2.21E-02
185GO:0010411: xyloglucan metabolic process2.23E-02
186GO:0006265: DNA topological change2.45E-02
187GO:0006816: calcium ion transport2.45E-02
188GO:0009773: photosynthetic electron transport in photosystem I2.45E-02
189GO:0048229: gametophyte development2.45E-02
190GO:0010015: root morphogenesis2.45E-02
191GO:0048481: plant ovule development2.47E-02
192GO:0008361: regulation of cell size2.70E-02
193GO:0006790: sulfur compound metabolic process2.70E-02
194GO:0016024: CDP-diacylglycerol biosynthetic process2.70E-02
195GO:0010582: floral meristem determinacy2.70E-02
196GO:0071555: cell wall organization2.73E-02
197GO:0006357: regulation of transcription from RNA polymerase II promoter2.81E-02
198GO:0080167: response to karrikin2.88E-02
199GO:0010628: positive regulation of gene expression2.95E-02
200GO:0006006: glucose metabolic process2.95E-02
201GO:0009785: blue light signaling pathway2.95E-02
202GO:0009691: cytokinin biosynthetic process2.95E-02
203GO:0050826: response to freezing2.95E-02
204GO:0010075: regulation of meristem growth2.95E-02
205GO:0010207: photosystem II assembly3.22E-02
206GO:0006541: glutamine metabolic process3.22E-02
207GO:0010223: secondary shoot formation3.22E-02
208GO:0009934: regulation of meristem structural organization3.22E-02
209GO:0030154: cell differentiation3.25E-02
210GO:0034599: cellular response to oxidative stress3.28E-02
211GO:0006508: proteolysis3.34E-02
212GO:0080188: RNA-directed DNA methylation3.49E-02
213GO:0090351: seedling development3.49E-02
214GO:0046854: phosphatidylinositol phosphorylation3.49E-02
215GO:0006839: mitochondrial transport3.57E-02
216GO:0009833: plant-type primary cell wall biogenesis3.77E-02
217GO:0006071: glycerol metabolic process3.77E-02
218GO:0006833: water transport3.77E-02
219GO:0007623: circadian rhythm3.92E-02
220GO:0009451: RNA modification4.03E-02
221GO:0009944: polarity specification of adaxial/abaxial axis4.06E-02
222GO:0080147: root hair cell development4.06E-02
223GO:0051017: actin filament bundle assembly4.06E-02
224GO:0042546: cell wall biogenesis4.20E-02
225GO:0051302: regulation of cell division4.36E-02
226GO:0019953: sexual reproduction4.36E-02
227GO:0006418: tRNA aminoacylation for protein translation4.36E-02
228GO:0008643: carbohydrate transport4.36E-02
229GO:0010073: meristem maintenance4.36E-02
230GO:0006825: copper ion transport4.36E-02
231GO:0009739: response to gibberellin4.50E-02
232GO:0031408: oxylipin biosynthetic process4.66E-02
233GO:0031348: negative regulation of defense response4.97E-02
234GO:0006730: one-carbon metabolic process4.97E-02
RankGO TermAdjusted P value
1GO:0071633: dihydroceramidase activity0.00E+00
2GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
3GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
4GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity0.00E+00
5GO:0004056: argininosuccinate lyase activity0.00E+00
6GO:0004401: histidinol-phosphatase activity0.00E+00
7GO:0070009: serine-type aminopeptidase activity0.00E+00
8GO:0052834: inositol monophosphate phosphatase activity0.00E+00
9GO:0001872: (1->3)-beta-D-glucan binding1.47E-04
10GO:0004805: trehalose-phosphatase activity1.98E-04
11GO:0004124: cysteine synthase activity6.83E-04
12GO:0042834: peptidoglycan binding7.15E-04
13GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity7.15E-04
14GO:0052906: tRNA (guanine(37)-N(1))-methyltransferase activity7.15E-04
15GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity7.15E-04
16GO:0004156: dihydropteroate synthase activity7.15E-04
17GO:0003848: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity7.15E-04
18GO:0005290: L-histidine transmembrane transporter activity7.15E-04
19GO:0004008: copper-exporting ATPase activity7.15E-04
20GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity7.15E-04
21GO:0004071: aspartate-ammonia ligase activity7.15E-04
22GO:0004830: tryptophan-tRNA ligase activity7.15E-04
23GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity7.15E-04
24GO:0052381: tRNA dimethylallyltransferase activity7.15E-04
25GO:0010347: L-galactose-1-phosphate phosphatase activity7.15E-04
26GO:0004400: histidinol-phosphate transaminase activity7.15E-04
27GO:0050139: nicotinate-N-glucosyltransferase activity7.15E-04
28GO:0004674: protein serine/threonine kinase activity8.44E-04
29GO:0102083: 7,8-dihydromonapterin aldolase activity1.54E-03
30GO:0052832: inositol monophosphate 3-phosphatase activity1.54E-03
31GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity1.54E-03
32GO:0004150: dihydroneopterin aldolase activity1.54E-03
33GO:0008805: carbon-monoxide oxygenase activity1.54E-03
34GO:0008934: inositol monophosphate 1-phosphatase activity1.54E-03
35GO:0008493: tetracycline transporter activity1.54E-03
36GO:0052833: inositol monophosphate 4-phosphatase activity1.54E-03
37GO:0000064: L-ornithine transmembrane transporter activity1.54E-03
38GO:0015929: hexosaminidase activity1.54E-03
39GO:0004563: beta-N-acetylhexosaminidase activity1.54E-03
40GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.54E-03
41GO:0050017: L-3-cyanoalanine synthase activity1.54E-03
42GO:0003988: acetyl-CoA C-acyltransferase activity1.54E-03
43GO:0004103: choline kinase activity1.54E-03
44GO:0017118: lipoyltransferase activity1.54E-03
45GO:0009884: cytokinin receptor activity1.54E-03
46GO:0004066: asparagine synthase (glutamine-hydrolyzing) activity1.54E-03
47GO:0016415: octanoyltransferase activity1.54E-03
48GO:0009672: auxin:proton symporter activity1.87E-03
49GO:0000156: phosphorelay response regulator activity2.39E-03
50GO:0070330: aromatase activity2.55E-03
51GO:0017150: tRNA dihydrouridine synthase activity2.55E-03
52GO:0042781: 3'-tRNA processing endoribonuclease activity2.55E-03
53GO:0016805: dipeptidase activity2.55E-03
54GO:0005034: osmosensor activity2.55E-03
55GO:0070180: large ribosomal subunit rRNA binding2.55E-03
56GO:0010329: auxin efflux transmembrane transporter activity3.32E-03
57GO:0005262: calcium channel activity3.32E-03
58GO:0015181: arginine transmembrane transporter activity3.71E-03
59GO:0035197: siRNA binding3.71E-03
60GO:0015189: L-lysine transmembrane transporter activity3.71E-03
61GO:0004650: polygalacturonase activity4.08E-03
62GO:0005253: anion channel activity5.01E-03
63GO:0019199: transmembrane receptor protein kinase activity5.01E-03
64GO:0046556: alpha-L-arabinofuranosidase activity5.01E-03
65GO:0004659: prenyltransferase activity5.01E-03
66GO:0004930: G-protein coupled receptor activity5.01E-03
67GO:0016279: protein-lysine N-methyltransferase activity5.01E-03
68GO:0004845: uracil phosphoribosyltransferase activity5.01E-03
69GO:0004345: glucose-6-phosphate dehydrogenase activity5.01E-03
70GO:0004176: ATP-dependent peptidase activity6.35E-03
71GO:0004888: transmembrane signaling receptor activity6.45E-03
72GO:0004523: RNA-DNA hybrid ribonuclease activity6.45E-03
73GO:0005275: amine transmembrane transporter activity6.45E-03
74GO:0018685: alkane 1-monooxygenase activity6.45E-03
75GO:0016773: phosphotransferase activity, alcohol group as acceptor6.45E-03
76GO:0070696: transmembrane receptor protein serine/threonine kinase binding6.45E-03
77GO:0008725: DNA-3-methyladenine glycosylase activity6.45E-03
78GO:1990714: hydroxyproline O-galactosyltransferase activity8.01E-03
79GO:0008519: ammonium transmembrane transporter activity8.01E-03
80GO:0005247: voltage-gated chloride channel activity8.01E-03
81GO:2001070: starch binding8.01E-03
82GO:0004605: phosphatidate cytidylyltransferase activity8.01E-03
83GO:0008195: phosphatidate phosphatase activity9.69E-03
84GO:0004849: uridine kinase activity9.69E-03
85GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity9.69E-03
86GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity9.69E-03
87GO:0004656: procollagen-proline 4-dioxygenase activity9.69E-03
88GO:0019900: kinase binding9.69E-03
89GO:0019899: enzyme binding1.15E-02
90GO:0003872: 6-phosphofructokinase activity1.15E-02
91GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting1.21E-02
92GO:0016762: xyloglucan:xyloglucosyl transferase activity1.30E-02
93GO:0042803: protein homodimerization activity1.32E-02
94GO:0004518: nuclease activity1.39E-02
95GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding1.46E-02
96GO:0016301: kinase activity1.52E-02
97GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.54E-02
98GO:0005375: copper ion transmembrane transporter activity1.54E-02
99GO:0016759: cellulose synthase activity1.58E-02
100GO:0008237: metallopeptidase activity1.68E-02
101GO:0008889: glycerophosphodiester phosphodiesterase activity1.75E-02
102GO:0004673: protein histidine kinase activity2.21E-02
103GO:0030247: polysaccharide binding2.23E-02
104GO:0016798: hydrolase activity, acting on glycosyl bonds2.23E-02
105GO:0005089: Rho guanyl-nucleotide exchange factor activity2.45E-02
106GO:0008327: methyl-CpG binding2.45E-02
107GO:0004672: protein kinase activity2.67E-02
108GO:0004521: endoribonuclease activity2.70E-02
109GO:0016829: lyase activity2.90E-02
110GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds2.90E-02
111GO:0009982: pseudouridine synthase activity2.95E-02
112GO:0003725: double-stranded RNA binding2.95E-02
113GO:0004022: alcohol dehydrogenase (NAD) activity2.95E-02
114GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.95E-02
115GO:0004089: carbonate dehydratase activity2.95E-02
116GO:0031072: heat shock protein binding2.95E-02
117GO:0000155: phosphorelay sensor kinase activity2.95E-02
118GO:0019888: protein phosphatase regulator activity2.95E-02
119GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors3.13E-02
120GO:0008083: growth factor activity3.22E-02
121GO:0015144: carbohydrate transmembrane transporter activity3.28E-02
122GO:0005351: sugar:proton symporter activity3.81E-02
123GO:0004871: signal transducer activity4.00E-02
124GO:0004185: serine-type carboxypeptidase activity4.04E-02
125GO:0031418: L-ascorbic acid binding4.06E-02
126GO:0005525: GTP binding4.34E-02
127GO:0043424: protein histidine kinase binding4.36E-02
128GO:0043621: protein self-association4.36E-02
129GO:0005345: purine nucleobase transmembrane transporter activity4.36E-02
130GO:0035251: UDP-glucosyltransferase activity4.66E-02
131GO:0033612: receptor serine/threonine kinase binding4.66E-02
132GO:0003964: RNA-directed DNA polymerase activity4.66E-02
133GO:0008408: 3'-5' exonuclease activity4.66E-02
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Gene type



Gene DE type