gene detail

Gene description

RAP-DB: OS03G0309200

Short description: Similar to Phytochrome B.

Orthologous

Arabidopsis:

AT1G09570

Maize:

GRMZM2G124532

Wheat: No orthologous

GO biological process

regulation of transcription, DNA-dependent (GO:0006355), signal transduction (GO:0007165), detection of visible light (GO:0009584), red, far-red light phototransduction (GO:0009585), protein-tetrapyrrole linkage (GO:0017006), peptidyl-histidine phosphorylation (GO:0018106), protein-chromophore linkage (GO:0018298)

GO cellular component

membrane (GO:0016020)

GO molecular function

two-component sensor activity (GO:0000155), protein histidine kinase activity (GO:0004673), signal transducer activity (GO:0004871), protein binding (GO:0005515), ATP binding (GO:0005524), G-protein coupled photoreceptor activity (GO:0008020), photoreceptor activity (GO:0009881), protein homodimerization activity (GO:0042803)

Protein domain

Pfam	PF01590, GAF domain
Pfam	PF00989, PAS fold
Pfam	PF02518, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Pfam	PF00360, Phytochrome region
Pfam	PF08446, PAS fold
Pfam	PF00512, His Kinase A (phospho-acceptor) domain
SMART	SM00091, PAS
SMART	SM00388, HisKA
SMART	SM00065, GAF
SMART	SM00387, HATPase_c

Metabolic pathway

Not involved in metabolic pathway

KEGG pathway

PATH:dosa04712: Circadian rhythm - plant

Coexpression network

GSE63047_T7174R  view
GSE33411_IRBB5  view
GSE16793_XOO  view
GSE16793_XOC  view
GSE62894_S_77  view
GSE33411_IRBB7  view
GSE33411_IR24  view
GSE63047_DELTAHRCV  view

Differentially expressed condition

8 conditions

Series	Control	Treatment	Log₂FC	Adj. P value
GSE33411	IR24, control	IR24, Xanthomonas oryzae pv. oryzae 12 h	1.54	4.98E-13
GSE62894	Nipponbare, pish, water 5 d	Nipponbare, pish, Magnaporthe oryzae Kyu77-07A 5 d	-4.64	1.16E-09
GSE62895	Nipponbare, Pia, water 1 d	Nipponbare, Pia, Magnaporthe oryzae P91-15B 1 d	3.71	2.30E-02
GSE62895	Nipponbare, Pia, water 2 d	Nipponbare, Pia, Magnaporthe oryzae P91-15B 2 d	2.95	2.52E-02
GSE62895	Nipponbare, Pia, water 3 d	Nipponbare, Pia, Magnaporthe oryzae P91-15B 3 d	3.54	1.58E-03
GSE62895	Nipponbare, pia, water 2 d	Nipponbare, pia, Magnaporthe oryzae P91-15B 2 d	3.34	2.35E-02
GSE62895	Nipponbare, pia, water 3 d	Nipponbare, pia, Magnaporthe oryzae P91-15B 3 d	3.51	1.67E-03
GSE7256	Nipponbare, Mock 4 d	Nipponbare, Magnaporthe grisea FR13 5 d	-1.58	5.39E-03